These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 735 fasta sequence [AGAGCACAACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA-CGC-GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA-TCCCCGCCGACCAGGCC-AAGGAC-GCGCCCAAGCAGGATTAATCCAGTCTGCATC-TAC-TGCAAC-TCTAC-TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA-CCCA-CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC-GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF313608 [AGAGCACAACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACGGCACACGGCAAAATTTCTCC ATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACT ] [+] EMBL CF315339 [ CAACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCNCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGC ] [+] EMBL AK063582 [ AACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCA ] [+] EMBL C29020 [ CACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGATTTGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TTCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGA ] [+] EMBL AU066336 [ AGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCANCGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAG ATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGATTCCCCGCCGACCAGGNC AAGGAC GCGCCCANGCAGGTTTAATCCAGTCTGCATCTTNCTTGCAACTTTTACTTAGTtc ] [+] EMBL AU066241 [ AGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGTTCGNTAGNTCCTTTNCAGTTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGANTTAGNTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGACCGCGGGTGACGAGGACGGTTCAag ] [+] EMBL CF313604 [ AGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACGGCACACGGCAAAATTT ATCCATCGATCGATCCTTTGCAATTGCAAGAACGGCAGGCATGTCGAGCACCAATA ] [+] EMBL AU166233 [ ACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAG TCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTA NACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCNATAATAATATAATAATATACTGTCAAAAAATAATATAAAAAAAaaa ] [+] EMBL C28247 [ ACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGNATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGTCGGCACCGACGGCAGCGGAG ATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTNGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCANGGTGGTGCAC ] [+] EMBL AA752362 [ AAAAACGGAAAAACCCAATCAGATCACTTCACCCACAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAGGCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCC ] [-] EMBL CF313609 [ GACGGCAGCGGAGCATGGAGGCGGCAAGGA CGC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAAAAAaa ] [+] EMBL AU223318 [ CAAGGA CNC GGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTACGGTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAA ] [+] EMBL AU165265 [ C GNTGACGAAGACGGTNCAGACGGTGNAGGTGAAGGAGTCGGTNGGACAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCCAAAGGACGGCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATA CCCA CCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAAaaa ] [+] EMBL AU223464 [ GTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGA TCCCCGCCGACCAGGCC AAGGAC GCGCCCAAGCAGGATTAATCCAGTCTGCATC TAC TGCAAC TCTAC TAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGCAGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATACCCCACCCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAA ] [+] EMBL CF315330 [ TGCTTAGCACTTAC GTGCCGCAGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAATATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [GTGTATGTATACTATATAATATCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGATGGAGGCGGCAAGGACGCGGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCGGTCTTGCA] [+] EMBL AA750726 [GTGTATGTATACTATATAATATCAAGGATGAATTAGCTCCGCCGGCACCGACGGCAGCGGAGATGGAGGCGGCAAGGACGCGGTGACGAAGACGGTGCAGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGGTGCACCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCGGTCTTGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14499#0 AGAGCACAACACTACAGGGACACCCAAAAACGGAAAAACCCAATCAGATCACTTCACCCA 60 consensus_14499#1 ------------------------------------------------------------ consensus_14499#0 CAGCACACGGCAAAATTTCTCCATCGATCGATCGATCCTTTGCAATTGCAAGAGCGGCAG 120 consensus_14499#1 ------------------------------------------------------------ consensus_14499#0 GCATGTCGAGCACCAATACCACAAGCAACGACCCCAAGACGACCAAGGATGAATTAGCTC 180 consensus_14499#1 --------------------GTGTATGTATACTATATAAT-ATCAAGGATGAATTAGCTC 39 ** * * * ***************** consensus_14499#0 CGCCGGCACCGACGGCAGCGGAGCATGGAGGCGGCAAGGACGCGGTGACGAAGACGGTGC 240 consensus_14499#1 CGCCGGCACCGACGGCAGCGGAG-ATGGAGGCGGCAAGGACGCGGTGACGAAGACGGTGC 98 *********************** ************************************ consensus_14499#0 AGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGG 300 consensus_14499#1 AGACGGTGGAGGTGAAGGAGTCGGTGGGGCAGGAGCCGGTGCTCAAGCCCACCAAGGTGG 158 ************************************************************ consensus_14499#0 TGCACCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCTGC 360 consensus_14499#1 TGCACCAGATCCCCGCCGACCAGGCCAAGGACGCGCCCAAGCAGGATTAATCCAGTCGGT 218 ********************************************************* * consensus_14499#0 ATCTACTGCAACTCTACTAGTACTAGTACCTTTGCACCTTGCAGTTGCAGTCGGTCTTGC 420 consensus_14499#1 CT----TGCA-------------------------------------------------- 224 * **** consensus_14499#0 AGATATGTTCATGGACACGCCGAGTTTGGTTTAGTTAGTTTTCTGCGAATGCGTGATACC 480 consensus_14499#1 ------------------------------------------------------------ consensus_14499#0 CACCCACCTCTTGTTCTTGAAAATGTTTTGTATTACATCTGCTTAGCACTTACGTGCCGC 540 consensus_14499#1 ------------------------------------------------------------ consensus_14499#0 AGCTAAGTGTCTGTATTGTTTGTTACATATCGATTAACTAATGTGGCCCCCAATAATAAT 600 consensus_14499#1 ------------------------------------------------------------ consensus_14499#0 ATAATAATATACTGTCAAAAAATAATATAATATAATATACAAAAAAAAAAAAAAAAAAAA 660 consensus_14499#1 ------------------------------------------------------------ consensus_14499#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 720 consensus_14499#1 ------------------------------------------------------------ consensus_14499#0 AAAAAAAAAAAAAAA 735 consensus_14499#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||