cluster # 1450

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Oryza sativa
cluster # 1450 cluster # 1450 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1450#0 length = 585 sequences # 1

consensus_1450#1 length = 236 sequences # 1

consensusID : consensus_1450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [AAACAAGAAAAGAAATTCTATCATCAACATGGGTCGTGTTCGTACAAAAACCGTTAAAAAAGCATCACGTCAAATCATCGAAAAATACTACACAAAATTGACGCTTGATTTTCATACGAACAAACGTGTCGTCGAAGAAATTGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGCTGGTTTCATTACACATTTAATGAAACGTATTCAAGCTGGACCCGTTCGTGGTATTTCAATTAAACTTCAAGAAGAAGAACGTGAACGACGTGACAATTACGTACCCGAAATATCTGCCCTTGAACCGCANACTATCATTGCTATCGATCAAGATACAAAGGATATGTTGAATGCGTTTGATTTCAAAACATTACCTAATGTTGATGTTCACACAGCTGATGATCAACGTAATCAACAACAAGGTGGTAATCACCGAGGTAGACCAGGTGGTTATACTCGTCGAAACAACGCTGAATAAACCATGTCCACATTCATAGATGAAGACCCGCATACACACACACCANATGAATTTTTTTTTCAATCCTGCCGAACCCAAATATAAACCTTGCTTTTTCTTCTAGATAC]

[+] EMBL CA758949             [AAACAAGAAAAGAAATTCTATCATCAACATGGGTCGTGTTCGTACAAAAACCGTTAAAAAAGCATCACGTCAAATCATCGAAAAATACTACACAAAATTGACGCTTGATTTTCATACGAACAAACGTGTCGTCGAAGAAATTGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGCTGGTTTCATTACACATTTAATGAAACGTATTCAAGCTGGACCCGTTCGTGGTATTTCAATTAAACTTCAAGAAGAAGAACGTGAACGACGTGACAATTACGTACCCGAAATATCTGCCCTTGAACCGCANACTATCATTGCTATCGATCAAGATACAAAGGATATGTTGAATGCGTTTGATTTCAAAACATTACCTAATGTTGATGTTCACACAGCTGATGATCAACGTAATCAACAACAAGGTGGTAATCACCGAGGTAGACCAGGTGGTTATACTCGTCGAAACAACGCTGAATAAACCATGTCCACATTCATAGATGAAGACCCGCATACACACACACCANATGAATTTTTTTTTCAATCCTGCCGAACCCAAATATAAACCTTGCTTTTTCTTCTAGATAC]




>consensus_1450#0
AAACAAGAAAAGAAATTCTATCATCAACATGGGTCGTGTTCGTACAAAAACCGTTAAAAA
AGCATCACGTCAAATCATCGAAAAATACTACACAAAATTGACGCTTGATTTTCATACGAA
CAAACGTGTCGTCGAAGAAATTGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGC
TGGTTTCATTACACATTTAATGAAACGTATTCAAGCTGGACCCGTTCGTGGTATTTCAAT
TAAACTTCAAGAAGAAGAACGTGAACGACGTGACAATTACGTACCCGAAATATCTGCCCT
TGAACCGCANACTATCATTGCTATCGATCAAGATACAAAGGATATGTTGAATGCGTTTGA
TTTCAAAACATTACCTAATGTTGATGTTCACACAGCTGATGATCAACGTAATCAACAACA
AGGTGGTAATCACCGAGGTAGACCAGGTGGTTATACTCGTCGAAACAACGCTGAATAAAC
CATGTCCACATTCATAGATGAAGACCCGCATACACACACACCANATGAATTTTTTTTTCA
ATCCTGCCGAACCCAAATATAAACCTTGCTTTTTCTTCTAGATAC

consensusID : consensus_1450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [CATTCTCGTTCGATAATAAAAGCGAAACATGGGTCGTGTTCGTACGAAAACCGTTAAAAAAGCTTCGCGACAAATCATCGAAAAATACTACACGAAATTAACACTCGATTTTCATACAAATAAACGTGTCGTCGAAGAAATAGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGCCGGTTTTATTACACATTTAATGAAACGTATTCAAGCCGGACCGGTTCGAGGCATTT]

[+] EMBL CA753801             [CATTCTCGTTCGATAATAAAAGCGAAACATGGGTCGTGTTCGTACGAAAACCGTTAAAAAAGCTTCGCGACAAATCATCGAAAAATACTACACGAAATTAACACTCGATTTTCATACAAATAAACGTGTCGTCGAAGAAATAGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGCCGGTTTTATTACACATTTAATGAAACGTATTCAAGCCGGACCGGTTCGAGGCATTT]




>consensus_1450#1
CATTCTCGTTCGATAATAAAAGCGAAACATGGGTCGTGTTCGTACGAAAACCGTTAAAAA
AGCTTCGCGACAAATCATCGAAAAATACTACACGAAATTAACACTCGATTTTCATACAAA
TAAACGTGTCGTCGAAGAAATAGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCGC
CGGTTTTATTACACATTTAATGAAACGTATTCAAGCCGGACCGGTTCGAGGCATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1450#0      -AAACAAGAAAAGAAATTCTATCATCAACATGGGTCGTGTTCGTACAAAAACCGTTAAAA 59
consensus_1450#1      CATTCTCGTTCGATAATAAAAGCGA-AACATGGGTCGTGTTCGTACGAAAACCGTTAAAA 59
                       *  *  *      ***   * *   ******************** *************

consensus_1450#0      AAGCATCACGTCAAATCATCGAAAAATACTACACAAAATTGACGCTTGATTTTCATACGA 119
consensus_1450#1      AAGCTTCGCGACAAATCATCGAAAAATACTACACGAAATTAACACTCGATTTTCATACAA 119
                      **** ** ** *********************** ***** ** ** *********** *

consensus_1450#0      ACAAACGTGTCGTCGAAGAAATTGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCG 179
consensus_1450#1      ATAAACGTGTCGTCGAAGAAATAGCTATTATTCCAACAAAACGTCTTCGAAATCAAATCG 179
                      * ******************** *************************************

consensus_1450#0      CTGGTTTCATTACACATTTAATGAAACGTATTCAAGCTGGACCCGTTCGTGGTATTTCAA 239
consensus_1450#1      CCGGTTTTATTACACATTTAATGAAACGTATTCAAGCCGGACCGGTTCGAGGCATTT--- 236
                      * ***** ***************************** ***** ***** ** ****   

consensus_1450#0      TTAAACTTCAAGAAGAAGAACGTGAACGACGTGACAATTACGTACCCGAAATATCTGCCC 299
consensus_1450#1      ------------------------------------------------------------
                                                                                  

consensus_1450#0      TTGAACCGCANACTATCATTGCTATCGATCAAGATACAAAGGATATGTTGAATGCGTTTG 359
consensus_1450#1      ------------------------------------------------------------
                                                                                  

consensus_1450#0      ATTTCAAAACATTACCTAATGTTGATGTTCACACAGCTGATGATCAACGTAATCAACAAC 419
consensus_1450#1      ------------------------------------------------------------
                                                                                  

consensus_1450#0      AAGGTGGTAATCACCGAGGTAGACCAGGTGGTTATACTCGTCGAAACAACGCTGAATAAA 479
consensus_1450#1      ------------------------------------------------------------
                                                                                  

consensus_1450#0      CCATGTCCACATTCATAGATGAAGACCCGCATACACACACACCANATGAATTTTTTTTTC 539
consensus_1450#1      ------------------------------------------------------------
                                                                                  

consensus_1450#0      AATCCTGCCGAACCCAAATATAAACCTTGCTTTTTCTTCTAGATAC 585
consensus_1450#1      ----------------------------------------------