These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1484 fasta sequence [GGTTTTCCAGTACAAAAACCAAAAGAAAGAGCCCCGCGACCTAGTGGAGAGGCGGTACACTGGTGGTGGTGGGGGTGGTGTGGTGGGGGACGCGACGCGACGAGATGCCTCGGGAGACGCCGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGCAGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGGTGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC-AAACTTCAAAATATATGATAGCAAGCCACCATATG-ATGGCG-CT-AAAG-CATCAAGT-AGTCGA-TCCAGT--CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT-CCAGAGGT-CCTAGGAGAATGT-ATTGTGCACTTGAGTGCCCTTCAACT-CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA-ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT-CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT-GGTAAGGTCGAT-GAC-AATATCTTCACGATGGATTA-CCGGCAGCCACTCTC-AGCGTTTC-AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT--TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA] [+] EMBL AK070401 [GGTTTTCCAGTACAAAAACCAAAAGAAAGAGCCCCGCGACCTAGTGGAGAGGCGGTACACTGGTGGTGGTGGGGGTGGTGTGGTGGGGGACGCGACGCGACGAGATGCCTCGGGAGACGCCGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGCAGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGGTGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCACGATGGATTA CCGGCAGCCACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTAc ] [+] EMBL AK099104 [ GGCGGTACACTGGTGGTGGTGGGGGTGGTGTGGTGGGGGACGCGACGCGACGAGATGCCTCGGGAGACGCCGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGCAGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGGTGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCACGATGGATTA CCGGCAGCCACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAG ] [+] EMBL CB659350 [ TGCCTCGGGAGACGCCGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGCAGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGGTGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTTTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCT ] [+] EMBL CB659537 [ GGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCTGCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGGAGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAA ] [+] EMBL C99544 [ GGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACNTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CTAAAAG CATCAA T AGTCG ] [-] EMBL AU223138 [ GCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGA TTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTA ] [-] EMBL AU101958 [ TCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGA TTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGT CCCT ] [-] EMBL AU097270 [ CCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGA TTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AACTTCAAAATATATGATAGCANGCACCCATATGAATGGCGCCT AAAGCCATCAAGTAAGTCGATTCCAGTTCCGGCGT ] [-] EMBL CB659351 [ CATACATGGGGAAACTGAGATCTGATTTTTGGGGGAC AAACTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTTTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCACGATGGATTA CCGGCAGCCACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTT ] [-] EMBL CB659538 [ ACATGGGGAAACTGAGATCTGATTTTGGGGGGAC AACTTTCAAAATATATGATAGCAAGCCACCATATG ATGGCG CT AAAG CATCAAGT AGTCGA TCCAGT CGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAAT CCAGAGGT CCTAGGAGAATGT ATTGTGCACTTGAGTGCCCTTCAACT CAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAA ACCCACAGGGAACACAGTTCTAAGAAACAAAGCT CCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCACGATGGATTA CCGGCAGCCACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTT ] [-] EMBL CA763124 [ AAATCCCAGAGGTGCTTGGGAGAATGTCATTGTGCACCGGAGTGCCCTTCCCCTCCAGGAGCCATGGGAAAACCGTCTAAAGGCGAAGTTCAGAAACCCCCACAGGGAACCCCGTTTTAAGAAACAAAGCTCCCCCGTGGGCATGAGCACGTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGGTGCTGCTGATCCCAATGATCCTGGTAGCTCGAAGGATGAGGAAACAGTTTTGCTGCAGTTT GGTAAGGTCGAT GAC AATATCTTCCCGATGGATTA CCGGCAGCCACTCTT AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGAGGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCGTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGTTGTGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTAAAAAAAAAAAAAAAA ] [+] EMBL C99543 [ GCTGGTGCTTGAACTTCCANGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTT GGTAAGGTCGNT GAC AATATNTTCACGATGGATTA CCGGCAGCCACTNTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTNATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATNNCCTGATGATACCTTTTTTAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA] [-] EMBL OSS3965A [ CGAAGGATGAGGAAACAGTCCTGTTGCAGTTT GGTAAGGCCGAT GAC AATACCTTCACGATGNATTA CCGGCAGCNACTCTC AGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCT ] [-] EMBL OSS3332A [ GAANCAGTCCTGTTGCAGTTTGGGTAAGGTCGATGGACAAATANCTTCACGATGGATTACCCGGCAGCCACTCTCAAGCGTTTC AAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCT ] [-] EMBL OSS2717A [ ATTA CCGGCAGCCACTCTC AGCGTTTCAAAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCT ] consensusID : consensus_14512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1108 fasta sequence [TTCAGTTTTTATAACTTCTCTTGTTCCTTTATTTGTGCTCAAAAGTATTTCATTTATTTCCTTGCAATTGATTGCTGTGTAAGTCTCACGGCAGTTCCTTTGAGACATTATTTCACTGTCCTAGATTAGGTTATGGCCTTATTTGATTTGATTCCCCTTATGGTGTGCAGATAATTTGGACTGGTTGGGTATCTGTTGTGTTTTCGTGCTTGTATTGGATTTTTGTTGTCTTAATTTTTATTCATTGGTATTATTGTGCTTCTGTTTAGATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAATCCAGAGGTCCTAGGAGAATGTATTGTGCACTTGAGTGCCCTTCAACTCAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAAACCCACAGGGAACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTTGGTAAGGTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGTTTCAAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGACTTAGCTCCGAGAAGGAAATTGTGTTGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTACTT] [+] EMBL AK072815 [TTCAGTTTTTATAACTTCTCTTGTTCCTTTATTTGTGCTCAAAAGTATTTCATTTATTTCCTTGCAATTGATTGCTGTGTAAGTCTCACGGCAGTTCCTTTGAGACATTATTTCACTGTCCTAGATTAGGTTATGGCCTTATTTGATTTGATTCCCCTTATGGTGTGCAGATAATTTGGACTGGTTGGGTATCTGTTGTGTTTTCGTGCTTGTATTGGATTTTTGTTGTCTTAATTTTTATTCATTGGTATTATTGTGCTTCTGTTTAGATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAATCCAGAGGTCCTAGGAGAATGTATTGTGCACTTGAGTGCCCTTCAACTCAAGAGACATGGGAAAACTGTCTAAAGACGAAGTTCAGAAAACCCACAGGGAACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTGAACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCTGATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTTGGTAAGGTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGTTTCAAGCCTTTGCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATGTCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCATTTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGTTCTTGTGCGGGAAATGTACCATTTTACCAAATGGACTTAGCTCCGAGAAGGAAATTGTGTTGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGATGAAGTGATGATACCTTTTTTACTT] consensusID : consensus_14512#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [GTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAATTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAATCCAGNNNTCCTNNNNNNATGTATTGTGCACTTGAGTGCCCTTCAACTCANGNNNCATNNNNNNNNCTGTCT] [+] EMBL CF197187 [GTTCCCAATGCAATGTTTCATTAAGCGGAATAAGAAGAACTCTACGTTCTACCTCTACCTTGGTTTGACAAATGCAACTGTGGATAAAGGGAAATTCCTCATGGCTGCTAGAAGGTTTAGACGTGGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTTTCACAAGGAAGCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAACTTCAAAATATATGATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTGGAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCTATAAATACAACCTGCTCAAATCCAGNNNTCCTNNNNNNATGTATTGTGCACTTGAGTGCCCTTCAACTCANGNNNCATNNNNNNNNCTGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14512#0 GGTTTTCCAGTACAAAAACCAAAAGAAAGAGCCCCGCGACCTAGTGGAGAGGCGGTACAC 60 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 ------------------------------------------------------------ consensus_14512#0 TGGTGGTGGTGGGGGTGGTGTGGTGGGGGACGCGACGCGACGAGATGCCTCGGGAGACGC 120 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 ------------------------------------------------------------ consensus_14512#0 CGCCGCCGCCGCCGCCGGAGGGCGGCGAGGTGCACGAGGTGGTGGAGGGGGAGGACGGGC 180 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 ------------------------------------------------------------ consensus_14512#0 AGGCGGAGGACCAGGAGGAGAGGTGGGCGCGGCTGCTGCCGGAGCTGATGTCCGAGGTGG 240 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 ------------------------------------------------------------ consensus_14512#0 TGCGGCGCGTGGAGGCGTCCGGGGGCGAGCGTTGGCCCGCGCGGAAGGACGTGGTCTCCT 300 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 ------------------------------------------------------------ consensus_14512#0 GCGCCTGCGTGTGCCGGCGGTGGCGGGACGCTGCCGTCGCCGTCGTGCGGCCGCCCGCGG 360 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 -----------------------------------------------------TTCAGTT 7 consensus_14512#0 AGTCCGGCAAGATCACCTTCCCGTCCTCGCTCAAGCAGCCAGGGCCAAGGGAGTTCCCAA 420 consensus_14512#2 ----------------------------------------------------GTTCCCAA 8 consensus_14512#1 TTTATAACTTCTCTTGTTCCTTTATTTGTGCTCAAAAGTATTTCATTTATTTCCTTGCAA 67 * *** consensus_14512#0 TGCAATGTTTCATTAAGCGGAATAAGAAGAACTCT---ACGTTCTACCTCTACCTTGGTT 477 consensus_14512#2 TGCAATGTTTCATTAAGCGGAATAAGAAGAACTCT---ACGTTCTACCTCTACCTTGGTT 65 consensus_14512#1 TTGATTGCTGTGT-AAGTCTCACGGCAGTTCCTTTGAGACATTATTTCACTGTCCTAGAT 126 * * ** * * *** * * ** * ** ** * * ** * * * * consensus_14512#0 TGACAAATGCAACTGTGGATAAAGGGAAGTTCCTCATGGCTGCTAGAAGGTTTAGAC--G 535 consensus_14512#2 TGACAAATGCAACTGTGGATAAAGGGAAATTCCTCATGGCTGCTAGAAGGTTTAGAC--G 123 consensus_14512#1 TAGGTTATG--GCCTTATTTGATTTGATTCCCCTTATGGTGTGCAGATAATTTGGACTGG 184 * *** * * * * ** *** **** *** *** *** * consensus_14512#0 T--GGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTT--TCACAAGGAA 591 consensus_14512#2 T--GGTCCCCATACCGAGTACATCGTATCCCTTGATGCTGATGACCTT--TCACAAGGAA 179 consensus_14512#1 TTGGGTATCTGTTGTGTTTTCGTGCTTGTATTGGATTTTTGTTGTCTTAATTTTTATTCA 244 * *** * * * * * * * * *** * * *** * * * consensus_14512#0 GCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAACTTCAAAATATATG 651 consensus_14512#2 GCAATGCATACATGGGGAAACTGAGATCTGATTTTTGGGGGACAAACTTCAAAATATATG 239 consensus_14512#1 TTGGTATTATTGTGCTTCTGTTTAGATCTGATTTTTGGGGGACAAACTTCAAAATATATG 304 * ** * ************************************* consensus_14512#0 ATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTG 711 consensus_14512#2 ATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTG 299 consensus_14512#1 ATAGCAAGCCACCATATGATGGCGCTAAAGCATCAAGTAGTCGATCCAGTCGGCGTTTTG 364 ************************************************************ consensus_14512#0 GAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCT 771 consensus_14512#2 GAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCT 359 consensus_14512#1 GAAGTAGAAGGATAAGTCCCCAAGTGTCAGCAGGAAACTATGAAGTTGGACAGGTTTCCT 424 ************************************************************ consensus_14512#0 ATAAATACAACCTGCTCAAATCCAGAGGTCCTAGGAGAATGTATTGTGCACTTGAGTGCC 831 consensus_14512#2 ATAAATACAACCTGCTCAAATCCAGNNNTCCTNNNNNNATGTATTGTGCACTTGAGTGCC 419 consensus_14512#1 ATAAATACAACCTGCTCAAATCCAGAGGTCCTAGGAGAATGTATTGTGCACTTGAGTGCC 484 ************************* **** ********************** consensus_14512#0 CTTCAACTCAAGAGACATGGGAAAAC-TGTCTAAAGACGAAGTTCAGAAAACCCACAGGG 890 consensus_14512#2 CTTCAACTCANGNNNCATNNNNNNNNCTGTCT---------------------------- 451 consensus_14512#1 CTTCAACTCAAGAGACATGGGAAAAC-TGTCTAAAGACGAAGTTCAGAAAACCCACAGGG 543 ********** * *** ***** consensus_14512#0 AACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTG 950 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 AACACAGTTCTAAGAAACAAAGCTCCCCGCTGGCATGAGCACTTGCAGTGCTGGTGCTTG 603 consensus_14512#0 AACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCT 1010 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 AACTTCCATGGGCGGGTGACAGTTGCATCTGTCAAGAATTTCCAACTAGTTGCTGCTGCT 663 consensus_14512#0 GATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTTGGTAAG 1070 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 GATCCCAATGATCCTGCTAGCTCGAAGGATGAGGAAACAGTTCTGTTGCAGTTTGGTAAG 723 consensus_14512#0 GTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGTTTCAAGCCTTT 1130 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 GTCGATGACAATATCTTCACGATGGATTACCGGCAGCCACTCTCAGCGTTTCAAGCCTTT 783 consensus_14512#0 GCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATG 1190 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 GCTATCAGCCTCAGCAGCTTTGGTACCAAGCTAGCTTGTGAATAGCAACATAGTTTGATG 843 consensus_14512#0 TCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCAT 1250 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 TCCTCATATTGCCATCTGGTTGTGGTTGTGGATGCATGCCGTTGTGGTTGTTCCCGGCAT 903 consensus_14512#0 TTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGT 1310 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 TTTTCTTCTTTCATTTCTTTCCTTTTTACTCTGGATATCAAGGTACTATTCATATCCTGT 963 consensus_14512#0 TCTTGTGCGGGAAATGTACCATTTTACCAAATGGATTTAGCTCCGAGAAGGAAATTGTGT 1370 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 TCTTGTGCGGGAAATGTACCATTTTACCAAATGGACTTAGCTCCGAGAAGGAAATTGTGT 1023 consensus_14512#0 TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGA 1430 consensus_14512#2 ------------------------------------------------------------ consensus_14512#1 TGTAAAACTTTTGCTTTTTAAGTGAAAGCAGAAGGCAGTCTGTTGTACATAAGTTCTTGA 1083 consensus_14512#0 TGAAGTGATGATACCTTTTTTAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAA 1484 consensus_14512#2 ------------------------------------------------------ consensus_14512#1 TGAAGTGATGATACCTTTTTTACTT----------------------------- 1108 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||