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Oryza sativa
cluster # 14515 cluster # 14515       Sequences # 17       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14515#0 length = 1568 sequences # 16  
consensus_14515#1 length = 159 sequences # 1  

consensusID : consensus_14515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 1568
fasta sequence
                              [ATTGAACGCGCTTGGAAAGGTTGACCCCAATAAGCTTATGCATGTAACAACAATGGACCGATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA-TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA-CTATTTTCGTCAGTCT-T-GCAAAGG-CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT-CAAGATAAGCCTTCAGA-GATGCCCTGCGAGAAAGAAGAG-TTGCTTAATGCTGCTGTCC-GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA-GGAACTACTA-GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC-AGAAAAAGAAGAAGGC-GATGT-TTTGCTATTAGCA-CCAGCC-AA-CCAGGAGAGGGTACACC-CCCTATCTTGGGATTATACTTTCTGAC-AGC-CAAAGACGGC-GTTTGAGAA-TTGAGATGTTGTAATCGGCAGC-CCC-CC-CTGCTCGCTT-CC-CTGGTTCTCC-TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG-GCAAAATTCTGACATAAATAAA-TGTGTTTTTTTGC----A---AAAAAAAAAAAGA]

[+] EMBL CB630329             [ATTGAACGCGCTTGGAAAGGTTGACCCCAATAAGCTTATGCATGTAACAACAATGGACCGATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB630368             [ATTGAAAG GCTTGGAAAGGTTGACCCCAATAAACTTATGCATGTAACAACAATGGACCGATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCATCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGGGAATTAATTGACCGATTGCAAAAAATTGATAATGATAACTACCCACAGACCCTATATCAAATGTTTATTGTCAATGCTGGGCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAATAGGTCAAGATGGTTAGAGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C26562               [                        CCCCAATAAGCTTATGCATGTAACAACAATGGACCGATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGGACACTGTGAAGTCCTTTCTGGNCCCAAAAACCACTTCCAAGNTACATGTACTCGGGGACAAATATCAAAGCAAGCTGCTAGGAGTAATTTGNTGCTAGTGAATTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB645368             [                                                                       ACCACGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AK060180             [                                                                                              AGCTTCTTGATCAAGTTCCCAGCATGCTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGTGGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGATAATGATAACTACCCAGAGACCCTATATCAAATG  TATTGTCAATGCTGGTCCGGGGTTTCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACATGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAA TTGATGCTAGTGAATTGCCGGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAAAGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGCTCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAAGCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGATGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCGTGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAA TGT                               ]
[-] EMBL CB630330             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAAGTGTG                              ]
[-] EMBL CB645369             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATGGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCGAGGGAAATTCTGACATAAATAAA                                   ]
[-] EMBL CB630369             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTCCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAAGGAGTCAGACCAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAATTTCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAACCCTTCAGATGATGCCCTGCGAGAAAGAAGAG TTGCTTAATGGTGCTGTCC GCAGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAATTGCTA GCGTACATAGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATTT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTTTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGACGTTGTAATCGGCAGC CCC CC CTGCTCGTTT CC ATGGTTGTCC CGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTATGACATAAATAAA TGTGTTTTTTTGC    A   AAAAAAAAAAAG ]
[+] EMBL AU100741             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ctcCCAATGGCTCTTTGGACCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAA TGTGTTTTTTTGC    A   AAAAAA       ]
[-] EMBL CA759466             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCAGTTTTGCTGGCAGTTTTTATGGCAATCATCACTTTAGTTCGGTCAGTTAAAGATCCTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCCACATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTTAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCC CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTTTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAA TGTGTTTTTTTGCCCCGAGTTAAAAAAAAAAAaa]
[+] EMBL BQ906770             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CATTACTTTAGTTCGGTCAGTTAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAACATTATATCCAGACTCGANGCCCAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAGCTTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGATGGAACTACTACGCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCCAAA NCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GC AAATTCTGACATAAATAAA TGTGTTTTTTTGC    A   AAAAA        ]
[+] EMBL BI807055             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ttgCCGACCACTTTCCCCAACTCCTGGGTTNGTTGAAGCTGAACCTATGTTCGTCAGTCTGTGGCAAAGGCCTGGGAGATCTTGAAGAGAAGTTCCTGATGCTTCCAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC  CCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACCAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AATCCAGGAGAGGGTACACC CCCTATCTTGGGATNATACTTTCTGAC AGC C AAGACGGC GTTTGAGAACTTGAGATGTTGTAATC GCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATC  GCCAAATTCTGACATAAATAAA TGTGTCCCCCCCC    A   AAAAAAAA     ]
[+] EMBL CB682425             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCCCCCACTCCTGGGTTTGTTGAAGCTGAA CTATTTTCGTCAGTCT T GCAAAGG CTGGGAGATCTTGAAGAGAAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGAC AGC CAAAGACGGC GTTTGAGAA TTGAGATGTTGTAATCGGCAGC CCC CC CTGCTCGCTT CC CTGGTTCTCC TGTAAAATGTGAAACGACAGACGTCGGATGTAAATCG GCAAAATTCTGACATAAATAAA TGT                               ]
[+] EMBL CA757425             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AAGTTCCTGATGCTT CAAGATAAGCCTTCAGA GATGCCCTGCGAGAAAGAAGAG TTGCTTAATGCTGCTGTCC GCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGAGGTTGCCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCAGCC AA CCAG                                                                                                                                                                                                                         ]
[+] EMBL BM420762             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGAAGA  TTGCTTAATGCTGCTGTCCNCCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACNAAGAAGGCCCTACATGAGGCTCTTATCAGGCAAGA GGAACTACTA GCCTACATCGACAGTAAGGA GTT CCAAGGCTC AGAAAAAGAAGAAGGC GATGT TTTGCTATTAGCA CCA CC AA CCAGGAGAGGGTACACC CCCTATCTTGGGATTATACTTTCTGNC AGC C AAGACGGC GTTTGAGAA TTGAGATGTTGTAATC GCAGC CCC CC CTGCTCGCTTCCC CTGGTTCTCC TGTAAAATGTGAAACGAC GACGTCGGATGTAAATCG GC AAATTCTGACATAAATAAA TGTGTTTTTTT C    A   AAAAAAAAA    ]
[+] EMBL BI811089             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 atGTAAGGAGGTTGCCAAGGCTCAAGAAAAAGAAGAAGGCAGATGTGTTTGCTATTAGCAGCCAGCC AA CCAGGAGAGGGTACACCACCCTATCTTGGGATTATACTTTCTGACAAGCACAAAGACGGCAGTTTGAGAA TTGAGATGTTGTAATCGGCAGCACCCACCACTGCTCGCTT CCACTGGTTCTCCATGTAAAATGTGAAACGACAGACGTCGGATGTAAATC  GCAAAATTCTGACATAAATAAA TGTGTTTTTTTGC    A   AAAAA        ]


>consensus_14515#0 ATTGAACGCGCTTGGAAAGGTTGACCCCAATAAGCTTATGCATGTAACAACAATGGACCG ATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATG CTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGT GGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGA TAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTT TCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACA TGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAATTGATGCTAGTGAATTGCC GGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAA AGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGC TCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAA GCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGA TGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCG TGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGT TCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGC CTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGA CCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGT TAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAAC ATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTT TGTTGAAGCTGAACTATTTTCGTCAGTCTTGCAAAGGCTGGGAGATCTTGAAGAGAAGTT CCTGATGCTTCAAGATAAGCCTTCAGAGATGCCCTGCGAGAAAGAAGAGTTGCTTAATGC TGCTGTCCGCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACA TGAGGCTCTTATCAGGCAAGAGGAACTACTAGCCTACATCGACAGTAAGGAGGTTGCCAA GGCTCAGAAAAAGAAGAAGGCGATGTTTTGCTATTAGCACCAGCCAACCAGGAGAGGGTA CACCCCCTATCTTGGGATTATACTTTCTGACAGCCAAAGACGGCGTTTGAGAATTGAGAT GTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGGTTCTCCTGTAAAATGTGAAACGAC AGACGTCGGATGTAAATCGGCAAAATTCTGACATAAATAAATGTGTTTTTTTGCAAAAAA AAAAAAGA



consensusID : consensus_14515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence
                              [GACGGCGTTTGAGAATTGAGATGTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGGGTTCTCCTGTAAAATGTGAAACGACAGACGTCGGATGTAAATCGGCCAAAATTCTGACATAAATAAATGTGTTTTTTGGCACCGAGTTCTTCCCTAAAAAA]

[+] EMBL BI803932             [GACGGCGTTTGAGAATTGAGATGTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGGGTTCTCCTGTAAAATGTGAAACGACAGACGTCGGATGTAAATCGGCCAAAATTCTGACATAAATAAATGTGTTTTTTGGCACCGAGTTCTTCCCTAAAAAA]


>consensus_14515#1 GACGGCGTTTGAGAATTGAGATGTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGGGT TCTCCTGTAAAATGTGAAACGACAGACGTCGGATGTAAATCGGCCAAAATTCTGACATAA ATAAATGTGTTTTTTGGCACCGAGTTCTTCCCTAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14515#0      ATTGAACGCGCTTGGAAAGGTTGACCCCAATAAGCTTATGCATGTAACAACAATGGACCG 60
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      ATATGTAAGATACCATGTGAAGGAATTTGAACGGAGCTTCTTGATCAAGTTCCCAGCATG 120
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      CTCTCTTGCTGCAAAAAGGCACATTGATTCGAGCACAACAATTCTTGATGTTCAGGGTGT 180
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      GGGTTTGAAAAATTTCAGCAAAACTGCACGTGAATTAATTGTCCGATTGCAAAAAATTGA 240
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TAATGATAACTACCCAGAGACCCTATATCAAATGTTTATTGTCAATGCTGGTCCGGGGTT 300
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TCGGCTCTTATGGAACACTGTGAAGTCCTTTCTGGACCCAAAAACCACTTCCAAGATACA 360
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TGTACTCGGGAACAAATATCAAAGCAAGCTGCTAGAAGTAATTGATGCTAGTGAATTGCC 420
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      GGAATTCCTTGGTGGCGCTTGTACCTGTCCTGAATATGGAGGGTGTCTTAAAGCTGAAAA 480
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      AGGACCATGGAAGGACCAAAACATACTCAATATAGTCCTTAGTGGCGAGGCTCAGTGTGC 540
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TCGACAAATTGTAACTGTTTCCAATGGAGAGGAAAAGATAATTTCTTATGCCAAGTCCAA 600
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      GCACCACACAATACGAGGGAGCGATACATCCACTGCTGAGTCTGGATCTGAGGCTGAAGA 660
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TGTTACGTCTCCAAAAGTACTGAGAAGTTACATCTCCCATCCTAAGTTGACCCCTGTCCG 720
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TGAAGAGGTCAAGATGGTTAGAGCCACGAGCTTTTCTACTCGCATGCCTGAATACGATGT 780
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGC 840
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      CTTCTCATCCAAAGACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGA 900
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      CCGGATCGTTGCAGTTTTGCTGGCAGTTTTTATGGCAATCATTACTTTAGTTCGGTCAGT 960
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TAAAGATCTTGCTGCAAAGAGATTGCCAGATAAAAACGAGTCAGAACAGAAGTATTCAAC 1020
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      ATTATATCCAGACTCGATGCCAAAAGAGGAATTCCGACCACCTTCCCCAACTCCTGGGTT 1080
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TGTTGAAGCTGAACTATTTTCGTCAGTCTTGCAAAGGCTGGGAGATCTTGAAGAGAAGTT 1140
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      CCTGATGCTTCAAGATAAGCCTTCAGAGATGCCCTGCGAGAAAGAAGAGTTGCTTAATGC 1200
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TGCTGTCCGCCGTGTGGATGCGCTGGAAGCTGAACTTATTGTAACAAAGAAGGCCCTACA 1260
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      TGAGGCTCTTATCAGGCAAGAGGAACTACTAGCCTACATCGACAGTAAGGAGGTTGCCAA 1320
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      GGCTCAGAAAAAGAAGAAGGCGATGTTTTGCTATTAGCACCAGCCAACCAGGAGAGGGTA 1380
consensus_14515#1      ------------------------------------------------------------
                                                                                   

consensus_14515#0      CACCCCCTATCTTGGGATTATACTTTCTGACAGCCAAAGACGGCGTTTGAGAATTGAGAT 1440
consensus_14515#1      --------------------------------------GACGGCGTTTGAGAATTGAGAT 22
                                                             **********************

consensus_14515#0      GTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGG-TTCTCCTGTAAAATGTGAAACGA 1499
consensus_14515#1      GTTGTAATCGGCAGCCCCCCCTGCTCGCTTCCCTGGGTTCTCCTGTAAAATGTGAAACGA 82
                       ************************************ ***********************

consensus_14515#0      CAGACGTCGGATGTAAATCGGC-AAAATTCTGACATAAATAAATGTGTTTTTTTGCAAAA 1558
consensus_14515#1      CAGACGTCGGATGTAAATCGGCCAAAATTCTGACATAAATAAATGTGTTTTTTGGCACCG 142
                       ********************** ****************************** ***   

consensus_14515#0      AAAA-------AAAAGA 1568
consensus_14515#1      AGTTCTTCCCTAAAAAA 159
                       *          **** *




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)