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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1453 cluster # 1453       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1453#0 length = 598 sequences # 1  
consensus_1453#1 length = 495 sequences # 1  

consensusID : consensus_1453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 598
fasta sequence
                              [CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCCAGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACTTCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAATGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCGTATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTAAGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGAAAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTCTTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG]

[+] EMBL CA753794             [CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCCAGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACTTCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAATGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCGTATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTAAGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGAAAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTCTTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG]


>consensus_1453#0 CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTAT TATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCC AGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTT GGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACT TCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAA TGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCG TATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTA AGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGA AAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTC TTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG



consensusID : consensus_1453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence
                              [TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCACAGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTTTGTCCCGAAAAAATTCATTTGATATATCACAAACACAAAATATTCACGTGTTTAACGTAAACATTTATCGGCCCCATAAACCGAGACCCCATAAACCGTAACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAATCCTAAACCCAAACCCCAAAAAGCTTCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAAGAACGACTAATAATTGAGCGAACATTTTGCTTGAAAATTGAAAGTGAATTTGTATTTGAAGTAGAAGAAATTTG]

[-] EMBL CA756296             [TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCACAGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTTTGTCCCGAAAAAATTCATTTGATATATCACAAACACAAAATATTCACGTGTTTAACGTAAACATTTATCGGCCCCATAAACCGAGACCCCATAAACCGTAACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAATCCTAAACCCAAACCCCAAAAAGCTTCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAAGAACGACTAATAATTGAGCGAACATTTTGCTTGAAAATTGAAAGTGAATTTGTATTTGAAGTAGAAGAAATTTG]


>consensus_1453#1 TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTATTATTCTATAACAA TATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCACAGCATATCGGAAA TATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGTGAATGTGATTG TATCAGCTAATACCGATGTTTGATCGATGTTTGTCCCGAAAAAATTCATTTGATATATCA CAAACACAAAATATTCACGTGTTTAACGTAAACATTTATCGGCCCCATAAACCGAGACCC CATAAACCGTAACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAAT CCTAAACCCAAACCCCAAAAAGCTTCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCA AGAACGACTAATAATTGAGCGAACATTTTGCTTGAAAATTGAAAGTGAATTTGTATTTGA AGTAGAAGAAATTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1453#0      CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTAT 60
consensus_1453#1      -------------TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTAT 47
                                   *** *** *  * *  *** *   ** **** ***************

consensus_1453#0      TATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCC 120
consensus_1453#1      TATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCAC 107
                      ********************************* ************************ *

consensus_1453#0      AGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTT 180
consensus_1453#1      AGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTT 167
                      ****************** *** ** **********************************

consensus_1453#0      GGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACT 240
consensus_1453#1      GTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTT-TGTCCCGAAAAAATT 226
                      * ***** ********** ******************  **    * *  **     * *

consensus_1453#0      TCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAA 300
consensus_1453#1      ------------CATTTGATATATCACAA---ACACAAAAT--ATTCACGTGTTTAACG- 268
                                  ****    **  ****    * *******    * * *    ***   

consensus_1453#0      TGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCG 360
consensus_1453#1      TAAAC---ATTTATCGGCCCCATAAACCGAGACC--CCATAAAC--------------CG 309
                      * ***   ****       ****         **   * * ***              **

consensus_1453#0      TATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTA 420
consensus_1453#1      TA----ACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAAT-CCTA 364
                      **    ** * *   *    *    ***      *   *  *** *  ** *  * * **

consensus_1453#0      AGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGA 480
consensus_1453#1      AACCCAAACCCCAAAAAGCT---TCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAA 421
                      *    *  *   ***        * *** * ****     ** *     ** *  *   *

consensus_1453#0      AAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTC 540
consensus_1453#1      GAACGACTAATAAT-----TGAGCGAACATTTTGCTTGAAAATT-GAAAGTGAATTTGTA 475
                       **  * *   **      * *   ** ** **   *** *    ** * *  *  * * 

consensus_1453#0      TTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG 598
consensus_1453#1      TTTGAAGTAGAAGAAATTTG-------------------------------------- 495
                      ***      **  *   ***                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)