These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1453#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence [CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCCAGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACTTCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAATGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCGTATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTAAGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGAAAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTCTTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG] [+] EMBL CA753794 [CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCCAGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACTTCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAATGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCGTATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTAAGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGAAAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTCTTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG] consensusID : consensus_1453#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCACAGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTTTGTCCCGAAAAAATTCATTTGATATATCACAAACACAAAATATTCACGTGTTTAACGTAAACATTTATCGGCCCCATAAACCGAGACCCCATAAACCGTAACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAATCCTAAACCCAAACCCCAAAAAGCTTCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAAGAACGACTAATAATTGAGCGAACATTTTGCTTGAAAATTGAAAGTGAATTTGTATTTGAAGTAGAAGAAATTTG] [-] EMBL CA756296 [TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTATTATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCACAGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTTGTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTTTGTCCCGAAAAAATTCATTTGATATATCACAAACACAAAATATTCACGTGTTTAACGTAAACATTTATCGGCCCCATAAACCGAGACCCCATAAACCGTAACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAATCCTAAACCCAAACCCCAAAAAGCTTCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAAGAACGACTAATAATTGAGCGAACATTTTGCTTGAAAATTGAAAGTGAATTTGTATTTGAAGTAGAAGAAATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1453#0 CGGNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAGGATATCAGTTTTTAT 60 consensus_1453#1 -------------TTTCTTTCTCATGTGGTTTCTNCTAANATCATGATATCAGTTTTTAT 47 *** *** * * * *** * ** **** *************** consensus_1453#0 TATTCTATAACAATATGTAATCCAAAAAACGATTATTTAAAAAAATAATTATTAAGGCCC 120 consensus_1453#1 TATTCTATAACAATATGTAATCCAAAAAACGATAATTTAAAAAAATAATTATTAAGGCAC 107 ********************************* ************************ * consensus_1453#0 AGCATATCGGAAATATACCAGAAAAAAAAGTTTGAGATATGTGTAACGCTTCGACGTTTT 180 consensus_1453#1 AGCATATCGGAAATATACAAGAGAAGAAAGTTTGAGATATGTGTAACGCTTCGACGTTTT 167 ****************** *** ** ********************************** consensus_1453#0 GGGAATGGGATTGTATCACCTAATACCGATGTTTGATTTATTCAATATGACGGGGGGACT 240 consensus_1453#1 GTGAATGTGATTGTATCAGCTAATACCGATGTTTGATCGATGTT-TGTCCCGAAAAAATT 226 * ***** ********** ****************** ** * * ** * * consensus_1453#0 TCCTGCCTGCGTCATTGATAATGGCACAGGTTATACAAAATTAGGTTATGCTGGTAATAA 300 consensus_1453#1 ------------CATTTGATATATCACAA---ACACAAAAT--ATTCACGTGTTTAACG- 268 **** ** **** * ******* * * * *** consensus_1453#0 TGAACCGCATTTTATCATTCCATCGGGTATTGCCGTTCGTGAACGTCCAGGTGCCAGTCG 360 consensus_1453#1 TAAAC---ATTTATCGGCCCCATAAACCGAGACC--CCATAAAC--------------CG 309 * *** **** **** ** * * *** ** consensus_1453#0 TATTGGACAATCAGGAGAAGATTTAAATTTCTTTATTGGGGATGAAACATTTGGTGCTTA 420 consensus_1453#1 TA----ACCACCGAAACCGAAACCGAATGGTGAGAAGAGCCATGGATTATATAAT-CCTA 364 ** ** * * * * *** * * *** * ** * * * ** consensus_1453#0 AGGTTACTCGATAAAGTATCCTATTCGACATGGTATTGTCGAAAATTGGGATTTGATGGA 480 consensus_1453#1 AACCCAAACCCCAAAAAGCT---TCCGAAACGGTAGCAAGGAGAGCAACGAGTAAAGCAA 421 * * * *** * *** * **** ** * ** * * * consensus_1453#0 AAAATATTGGGAACATTGGTTATTAAATATCTTCGGTGAGATCCAGAGAATATAACTTTC 540 consensus_1453#1 GAACGACTAATAAT-----TGAGCGAACATTTTGCTTGAAAATT-GAAAGTGAATTTGTA 475 ** * * ** * * ** ** ** *** * ** * * * * * consensus_1453#0 TTTTTGACGGACCACCCTTGAATACCCAAAAAATCGTGGATATTCTGCAGAAAATATG 598 consensus_1453#1 TTTGAAGTAGAAGAAATTTG-------------------------------------- 495 *** ** * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||