These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 522 fasta sequence [GAAGAAGAGAATAAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC-AGCTCTGTACAAATTACGCCTCTTTAAA-AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG-ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC-GGCGCGAACCGC-GGCCTCGCCACCG-GCT-TCCTCTCCGCCGCCGCCGCCG-GCGAGCTCCGCCCGGCCTGCTG-CTTCTCC-CCTTCC-TGCTGCC-T-CGTCGTCGC-CTTCTCC--GCCGCCGCCTTCTGCGTGCTTCCCCGGCGCTTGGT-CGTGCCTCCAGGAGAATCCGCGTGTAGTACCCCGTGCGCGGCGATCTCCGCCGGCNGACGAGCTCAGGAATGGAGAAGGNCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG] [-] EMBL CA755725 [GAAGAAGAGAATAAACTTTGATT TTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTT AA ACAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGGCGC CTTCTCC GCCGCCGCCTTCT ] [+] EMBL CB967167 [ AAAC TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCCGGGCGCGAACCGCGGGCCTCGCCACCGNGCTGTCCTCTCCGCCGCCGCCGCCGNGCGAGCTCCGCCCGGGCTGCTGNCTTCTCCGCCTTCCGTGCTGCC TCCGTCGTCGCGCTTCTCCGGGCCGCCGCCTTCTGCGTGCTTCCCCGGCGCTTGGT CGTGCCTCCAGGAGAATCCGCGTGTAGTACCCCGTGCGCGGCGATCTCCGCCGGCNGACGAGCTCAGGAATGGAGAAGGNCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTG ] [+] EMBL CB965810 [ AAAC TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GGCGCCGACTTCTGC TGCTT CCCGGCGC TGGTCCGT CCTCCAGGAGAAT CGCGTGTAGT ] [+] EMBL BI306642 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCCNT CGTCGTCGC CTTCTCC GCCGCCGCCTTC ] [+] EMBL BU673811 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ] [+] EMBL CB965065 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ] [+] EMBL BI306100 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ] [+] EMBL BI306409 [ AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GTT TCCTTTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ] [+] EMBL CB967491 [ AAACTTNGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAGAATAGAGTCAG ] [+] EMBL BU673528 [ AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ] [-] EMBL BU673839 [ AACTTTGATTTTATTAAATCAAATATACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACCAATTACGCCTCTTTAAA AAATAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCCATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTCT ] [+] EMBL CB965263 [ TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACNAGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ] [+] EMBL CB965186 [ TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC GCCGCCGCCTTC ] [-] EMBL BE230222 [ AAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTT AA ACAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGC CGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGGCGC CTTCTCC GCCGCCGCCTTCT ] [-] EMBL BE230439 [ CGTGTAGTACCCCG GCGCGGCGATCTCCGCCGGC GACGAGCTCAGG ATGGAGAAGGCCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG] consensusID : consensus_14531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACAGCTCTGTACAAATTACGCCTCTTTAAAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGCACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGGCCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGGGCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCGCACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTCAGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCAAGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGCCAGTTTGTGGCT] [+] EMBL CB966394 [AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACAGCTCTGTACAAATTACGCCTCTTTAAAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGCACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGGCCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGGGCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCGCACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTCAGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCAAGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGCCAGTTTGTGGCT] consensusID : consensus_14531#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTACAACACACACACACACACACACACAACCTACACGACGACACGACACTTGACACGCACTCGACGACTTACGACGTCACGACACGT] [+] EMBL CB965845 [AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTACAACACACACACACACACACACACAACCTACACGACGACACGACACTTGACACGCACTCGACGACTTACGACGTCACGACACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14531#0 GAAGAAGAGAATAAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 60 consensus_14531#1 ------------AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 48 consensus_14531#2 -------------AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 47 *********************************************** consensus_14531#0 TCA-TTTGA-TCGCTGTA-TGCCACA--GCTCTGTACAA-------ATTACGCCTCTTTA 108 consensus_14531#1 TCA-TTTGA-TCGCTGTA-TGCCACA--GCTCTGTACAA-------ATTACGCCTCTTTA 96 consensus_14531#2 TCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTA 107 *** ***** ******** ****** ********* * * ********* consensus_14531#0 AAAA-AAAAAAAAAACTAAGAG--AAGAATTGAAGCATCG-AGATAGAGTCAG-AAGGGA 163 consensus_14531#1 AAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGC 156 consensus_14531#2 CAACACACACACACACACACAC---ACAACCTACACGACGACACGACACTTGACACGCAC 164 ** * * * * ** * * ** * * ** * * * * * consensus_14531#0 ACG---ATGGTCTCGAAG--CAATTGATGCC-GTCG-AACT-CCGGCGC-GAACC-GCGG 213 consensus_14531#1 ACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGG 216 consensus_14531#2 TCG---ACGACTTACGACGTCACGACACGT------------------------------ 191 * * * * * ** * * consensus_14531#0 CCTC-GCCACCGGCTTCCTCTCCGCCGC-----CGC-CGCCG-GCGA-GCTCCGCCC--G 262 consensus_14531#1 CCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGG 276 consensus_14531#2 ------------------------------------------------------------ consensus_14531#0 GCCTGCTGCTT--CTCCCCTTCCT--GCTGCCT-CGTCGT-CGCCT-TCTCCG-CCGCCG 314 consensus_14531#1 GCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCG 336 consensus_14531#2 ------------------------------------------------------------ consensus_14531#0 C-CTTCTGCGTGC-TTCCCCGGCGCTTGGTCGTGCCT--CCAGGAG--AATCCGCGTGT- 367 consensus_14531#1 CACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTC 396 consensus_14531#2 ------------------------------------------------------------ consensus_14531#0 AGTACCCC-GTGCGC-GGCG-ATCTCCG--CCGGCNGACG-AGCTCAGGA-ATGG----A 416 consensus_14531#1 AGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCA 456 consensus_14531#2 ------------------------------------------------------------ consensus_14531#0 GAAGGNCAGG-ATCTTGTCC-ATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCC 474 consensus_14531#1 AGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGC---CAGTTTGTGGC 513 consensus_14531#2 ------------------------------------------------------------ consensus_14531#0 TTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG 522 consensus_14531#1 T----------------------------------------------- 514 consensus_14531#2 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||