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Oryza sativa
cluster # 14531 cluster # 14531       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14531#0 length = 522 sequences # 15  
consensus_14531#1 length = 514 sequences # 1  
consensus_14531#2 length = 191 sequences # 1  

consensusID : consensus_14531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 522
fasta sequence
                              [GAAGAAGAGAATAAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC-AGCTCTGTACAAATTACGCCTCTTTAAA-AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG-ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC-GGCGCGAACCGC-GGCCTCGCCACCG-GCT-TCCTCTCCGCCGCCGCCGCCG-GCGAGCTCCGCCCGGCCTGCTG-CTTCTCC-CCTTCC-TGCTGCC-T-CGTCGTCGC-CTTCTCC--GCCGCCGCCTTCTGCGTGCTTCCCCGGCGCTTGGT-CGTGCCTCCAGGAGAATCCGCGTGTAGTACCCCGTGCGCGGCGATCTCCGCCGGCNGACGAGCTCAGGAATGGAGAAGGNCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG]

[-] EMBL CA755725             [GAAGAAGAGAATAAACTTTGATT   TTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTT AA ACAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGGCGC CTTCTCC  GCCGCCGCCTTCT                                                                                                                                                                                                           ]
[+] EMBL CB967167             [            AAAC TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCCGGGCGCGAACCGCGGGCCTCGCCACCGNGCTGTCCTCTCCGCCGCCGCCGCCGNGCGAGCTCCGCCCGGGCTGCTGNCTTCTCCGCCTTCCGTGCTGCC TCCGTCGTCGCGCTTCTCCGGGCCGCCGCCTTCTGCGTGCTTCCCCGGCGCTTGGT CGTGCCTCCAGGAGAATCCGCGTGTAGTACCCCGTGCGCGGCGATCTCCGCCGGCNGACGAGCTCAGGAATGGAGAAGGNCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTG                      ]
[+] EMBL CB965810             [            AAAC TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GGCGCCGACTTCTGC TGCTT CCCGGCGC TGGTCCGT CCTCCAGGAGAAT CGCGTGTAGT                                                                                                                                                        ]
[+] EMBL BI306642             [            AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCCNT CGTCGTCGC CTTCTCC  GCCGCCGCCTTC                                                                                                                                                                                                            ]
[+] EMBL BU673811             [            AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GCCGCCGCCTTC                                                                                                                                                                                                            ]
[+] EMBL CB965065             [            AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GCCGCCGCCTTC                                                                                                                                                                                                            ]
[+] EMBL BI306100             [            AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GCCGCCGCCTTC                                                                                                                                                                                                            ]
[+] EMBL BI306409             [            AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GTT TCCTTTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GCCGCCGCCTTC                                                                                                                                                                                                            ]
[+] EMBL CB967491             [            AAACTTNGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAA AAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAGAATAGAGTCAG                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BU673528             [             AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GCCGCCGCCTTC                                                                                                                                                                                                            ]
[-] EMBL BU673839             [             AACTTTGATTTTATTAAATCAAATATACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACCAATTACGCCTCTTTAAA AAATAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCCATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GCCGCCGCCTTCT                                                                                                                                                                                                           ]
[+] EMBL CB965263             [                 TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACNAGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GCCGCCGCCTTC                                                                                                                                                                                                            ]
[+] EMBL CB965186             [                 TTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTTAAACAAAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGCCGCCG GCGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGTCGC CTTCTCC  GCCGCCGCCTTC                                                                                                                                                                                                            ]
[-] EMBL BE230222             [                                     AAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCAC AGCTCTGTACAAATTACGCCTCTTT AA ACAAAAAAAAAACTAAGAGAAGAATTGAAGCATCGAG ATAGAGTCAGAAGGGAACGATGGTCTCGAAGCAATTGATGCCGTCGAACTCC GGCGCGAACCGC GGCCTCGCCACCG GCT TCCTCTCCGCCGCCGC       CGAGCTCCGCCCGGCCTGCTG CTTCTCC CCTTCC TGCTGCC T CGTCGGCGC CTTCTCC  GCCGCCGCCTTCT                                                                                                                                                                                                           ]
[-] EMBL BE230439             [                                                                                                                                                                                                                                                                                                                                                                                           CGTGTAGTACCCCG GCGCGGCGATCTCCGCCGGC GACGAGCTCAGG ATGGAGAAGGCCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG]


>consensus_14531#0 GAAGAAGAGAATAAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT TCATTTGATCGCTGTATGCCACAGCTCTGTACAAATTACGCCTCTTTAAAAAAAAAAAAA AACTAAGAGAAGAATTGAAGCATCGAGATAGAGTCAGAAGGGAACGATGGTCTCGAAGCA ATTGATGCCGTCGAACTCCGGCGCGAACCGCGGCCTCGCCACCGGCTTCCTCTCCGCCGC CGCCGCCGGCGAGCTCCGCCCGGCCTGCTGCTTCTCCCCTTCCTGCTGCCTCGTCGTCGC CTTCTCCGCCGCCGCCTTCTGCGTGCTTCCCCGGCGCTTGGTCGTGCCTCCAGGAGAATC CGCGTGTAGTACCCCGTGCGCGGCGATCTCCGCCGGCNGACGAGCTCAGGAATGGAGAAG GNCAGGATCTTGTCCATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCCTTTGCT GACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG



consensusID : consensus_14531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence
                              [AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACAGCTCTGTACAAATTACGCCTCTTTAAAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGCACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGGCCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGGGCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCGCACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTCAGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCAAGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGCCAGTTTGTGGCT]

[+] EMBL CB966394             [AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGCTGTATGCCACAGCTCTGTACAAATTACGCCTCTTTAAAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGCACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGGCCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGGGCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCGCACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTCAGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCAAGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGCCAGTTTGTGGCT]


>consensus_14531#1 AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCATTTGATCGC TGTATGCCACAGCTCTGTACAAATTACGCCTCTTTAAAAACAAAAAAAAAACTAAGCAGC AAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGCACACGCATGGTCTCGCAAGCCAAT TGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGGCCTCCGCCACCTGGCTATCCTCTA CCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGGGCCTGCTGGCTTACTCCCCTTACC TGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCGCACTTCTAGCTGCATTCCCAGGCG CTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTCAGTACCCCTGTGCGCTGGCGCATC TCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCAAGGGCCCAGGCATCTTGTCCCATG CATCCAAGGCAAACTAAGTTGCCAGTTTGTGGCT



consensusID : consensus_14531#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 191
fasta sequence
                              [AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTACAACACACACACACACACACACACAACCTACACGACGACACGACACTTGACACGCACTCGACGACTTACGACGTCACGACACGT]

[+] EMBL CB965845             [AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTACAACACACACACACACACACACACAACCTACACGACGACACGACACTTGACACGCACTCGACGACTTACGACGTCACGACACGT]


>consensus_14531#2 AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTTTCACTTTGACTCG CTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTACAACACACACACA CACACACACACAACCTACACGACGACACGACACTTGACACGCACTCGACGACTTACGACG TCACGACACGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14531#0      GAAGAAGAGAATAAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 60
consensus_14531#1      ------------AAACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 48
consensus_14531#2      -------------AACTTTGATTTTATTAAATCAAATAAACGTATGGTCATTCATCAGTT 47
                                    ***********************************************

consensus_14531#0      TCA-TTTGA-TCGCTGTA-TGCCACA--GCTCTGTACAA-------ATTACGCCTCTTTA 108
consensus_14531#1      TCA-TTTGA-TCGCTGTA-TGCCACA--GCTCTGTACAA-------ATTACGCCTCTTTA 96
consensus_14531#2      TCACTTTGACTCGCTGTACTGCCACCACGCTCTGTACCACACACTTACCNNGCCTCTTTA 107
                       *** ***** ******** ******   ********* *       *    *********

consensus_14531#0      AAAA-AAAAAAAAAACTAAGAG--AAGAATTGAAGCATCG-AGATAGAGTCAG-AAGGGA 163
consensus_14531#1      AAAACAAAAAAAAAACTAAGCAGCAAGAATTGAAGCATCGCAGATAGAGTCAGCAAGGGC 156
consensus_14531#2      CAACACACACACACACACACAC---ACAACCTACACGACGACACGACACTTGACACGCAC 164
                        **   * * * * **  *      * **   *  *  **     * * *    * *   

consensus_14531#0      ACG---ATGGTCTCGAAG--CAATTGATGCC-GTCG-AACT-CCGGCGC-GAACC-GCGG 213
consensus_14531#1      ACACGCATGGTCTCGCAAGCCAATTGATGCNCGTCGCAACTACCGGCGCTGAACCTGCGG 216
consensus_14531#2      TCG---ACGACTTACGACGTCACGACACGT------------------------------ 191
                        *    * *   *   *   **    * *                               

consensus_14531#0      CCTC-GCCACCGGCTTCCTCTCCGCCGC-----CGC-CGCCG-GCGA-GCTCCGCCC--G 262
consensus_14531#1      CCTCCGCCACCTGGCTATCCTCTACCGCACGACCGCACGCCGTGCGAAGCTCCAGCCCGG 276
consensus_14531#2      ------------------------------------------------------------
                                                                                   

consensus_14531#0      GCCTGCTGCTT--CTCCCCTTCCT--GCTGCCT-CGTCGT-CGCCT-TCTCCG-CCGCCG 314
consensus_14531#1      GCCTGCTGGCTTACTCCCCTTACCTGGCTGCCTACGTCGTACGCCTATCTCCGACCGCCG 336
consensus_14531#2      ------------------------------------------------------------
                                                                                   

consensus_14531#0      C-CTTCTGCGTGC-TTCCCCGGCGCTTGGTCGTGCCT--CCAGGAG--AATCCGCGTGT- 367
consensus_14531#1      CACTTCTAGCTGCATTCCCAGGCGCTTGGTCAGTCCTTCCCAGGCAGCAATCTGCGTGTC 396
consensus_14531#2      ------------------------------------------------------------
                                                                                   

consensus_14531#0      AGTACCCC-GTGCGC-GGCG-ATCTCCG--CCGGCNGACG-AGCTCAGGA-ATGG----A 416
consensus_14531#1      AGTACCCCTGTGCGCTGGCGCATCTCCAGCCTGGCAGACGCAGCTCAAGGCATGGCAGCA 456
consensus_14531#2      ------------------------------------------------------------
                                                                                   

consensus_14531#0      GAAGGNCAGG-ATCTTGTCC-ATGATCAAGAAACTAGTGCAGTTGTGCTTCACTTTTGCC 474
consensus_14531#1      AGGGCCCAGGCATCTTGTCCCATGCATCCAAGGCAAACTAAGTTGC---CAGTTTGTGGC 513
consensus_14531#2      ------------------------------------------------------------
                                                                                   

consensus_14531#0      TTTGCTGACCAGTTTGGTTTGATTTGTGCTCGTGCCGAATTCGGCACG 522
consensus_14531#1      T----------------------------------------------- 514
consensus_14531#2      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)