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Oryza sativa
cluster # 14539 cluster # 14539       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14539#0 length = 1320 sequences # 15  
consensus_14539#1 length = 396 sequences # 1  
consensus_14539#2 length = 342 sequences # 1  

consensusID : consensus_14539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1320
fasta sequence
                              [ACGAAGGGAAGAAAAAAAAAAAAACTAAAATCTCATCGGAGATGG-CGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGC-GCGG-CGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGCAACCTGAAGAAGCAGGAGGCAGAC-TGGATGC-TCAAGATCGATA-TCGTAGAGAAAGGCGAT-AAGTTCGAGC-TCG-TT-GAGC-AAGATGA-GGAAGGGCACTGTAATGC-AGAATGC-AAAACCATTGAGCGTGCATGTCAGGAGGTGATGGGGTATGCTGATAGCGATGTTGCTGAATTCGTCTACAAGAAAAAACCTTCAGCTGATCAGCTGGTCAAATTTCTTTGCAAAGATCTTTCTG-AAGCATG-CGTTGTGGAT-CCACCACCAGTT-CCAAAAGATCGGGTCCCTGGCGAACCTTTTGCTGCTAAGCCAT-CAAAAGATGCTGAGATGGATAGGATATTGAAATCGATGGAGGGTATTCCAGGAGCTCCAAGCATGAAAATGTACTCTAGAGATGATCTGATGAAGAACAATTTTGGTGTTGACGGTGATGATGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCA-AAAAGTTAAAAGG-CCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAAGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTGTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATAAACG-TGTACAATTTTTTTCCAGAAATTTT-CAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAATATTCATGAGTCATAGTTTGCAAG-TTTAGGAAAAACACCAATTGATTGTTGCTATGCCATACTCTGTAAAACAACGGCCATACCAGTAAATTAGATGATTGGCTGTCTG-AGTTCTGTT-ATCTATTTAATTAAGGACCCAAAATACCTGTCCAAAAAAAAAAAAAAAAAA]

[+] EMBL AK067407             [ACGAAGGGAAGAAAAAAAAAAAAACTAAAATCTCATCGGAGATGG CGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGCGGCGG CGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAGCGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGCAACCTGAAGAAGCAGGAGGCAGAC TGGATGC TCAAGATCGATA TCGTAGAGAAAGGCGAT AAGCTCGAGC TCG TT GAGC AAGATGA GGAAGGGCACTGTAATGC AGAATGC AAAACCATTGAGCGTGCATGTCAGGAGGTGATGGGGTATGCTGATAGCGATGTTGCTGAATTCGTCTACAAGAAAAAACCTTCAGCTGATCAGCTGGTCAAATTTCTTTGCAAAGATCTTTCTG AAGCATG CGTTGTGGAT CCACCACCAGTT CCAAAAGATCGGGTCCCTGGCGAACCTTTTGCTGCTAAGCCAT CAAAAGATGCTGAGATGGATAGGATATTGAAATCGATGGAGGGTATTCCAGGAGCTCCAAGCATGAAAATGTACTCTAGAGATGATCTGATGAAGAACAATTTTGGTGTTGACGGTGATGATGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCA AAAAGTTAAAAGG CCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAAGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTGTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATAAACG TGTACAATTTTTTTCCAGAAATTTT CAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAATATTCATGAGTCATAGTTTGCAAG TTTAGGAAAAACACCAATTGATTGTTGCTATGCCATACTCTGTAAAACAACGGCCATACCAGTAAATTAGATGATTGGCTG                                                                  ]
[+] EMBL AU175068             [                  AAAAAACTAAAATCTCATCGGAGATGG CGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGC GCGGNCGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU070097             [                  AAAAAACTAAAATCTCATCGGAGATGGNCGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGC GCGG CGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTNCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGCAACCTGAAGAAGCAGGAGGCAGNT TNGATGCTTAAAGATCGATATTCGTAGAGAAAGGCGTTAAAGTTCGAGCTTCGTTT GAGCAAAGATnaag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU094908             [                  AAAAAACTAAAATCTCATCGGAGATGG CGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGC GCGG CGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTTCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTNC ACCTGAAGAAGCAGGAGGCAGAC TGGATGC TCAAGATCGATA TCGTAGAGAAAGGCGAT AAGTTCGAGC TCG TT TAGC AAGATNA GGAA GGCACTNT ATTC AGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU165339             [                  AAAAAACTAAAATCTCATCGGAGATGG CGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGCGGCGG CGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGCAACCTGAAGAAGCAGGAGGCAGAC TGGATGC TCAAGATCGATA TCGTAGAGAAAGGCGAT AAGCTCGAGC TCG TTGGAGC AAGATGA GGAAGGGCACTGTAATGC AGAATGC AAAACCATTGAGCGTGCATGTCAGGAGGTGATGGGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU070127             [                  AAAAAACTAAAATCTCATCGGAGATGG CGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGC GCGG CGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGC ACCTGAAGAAGCAGGAGGCAGACTTNGATGC TCAAGATCGATA TCGTAGAGAAAGGCGAT AAGTTCGAGCTTCG TT NAGCAAAGATNA GGAAGGGCACTNTAATTC AGAATTCAAAAACCATTTAGCGTGCATTTCAGGAGGTTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU070090             [                  AAAAAACTAAAATCTCATCGGAGATGG CGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGC GCGG CGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGCAACCTGAAGAAGCAGGAGGCAGAC TGGATGC TCAAGATCGATA TCGTAGAGAAAGGCGAT AAGTTCGAGC TCG TT TAGC AAGATGAGGGANGGGCACTGTAATNCAAGATTGA AAAACCATTTAGCGTGCATGTNAGGAGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU070079             [                  AAAAAACTAAAATCTCATCGGAGATGG CGAGAGGCGGCGGCGTCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTTCTGC GCGG CGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGCAACCTGAAGAAGCAGGAGGCAGAC TGGATGC TCAAGATCGATA TCGTAGAGAAAGGCGATAAANTTCGAGCTTCG TT NAGCAAAGATGA G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C98580               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CTTTGC AAGATCTTTCTGAAAGCATGCCTTTGTGGATCCCACCACCANTTCCCAAAAGATCGGGT CCTGGCGACCCTTTTGCTGCT AGCCCTCCAAAAGATNCTGAGATGGATAGGATATTGAAATCGATGGNGGGTATTCCAGGAGCTCC AGCATGAAAATGTACTCTAGAGATGATCTGATGAAGAACAATTTTGGTGTTGACGGTGATGATGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCA AAAAGTTAAAAGG CCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAAGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTGTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGTACATAAACG TGTACAATTTTTTTCCAGAAATTTT CAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAAaaaa                                                                                                                                                                        ]
[+] EMBL AU172890             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGATGATGNCGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCA AAAAGTTAAAAGG CCATGTGAACAAGGTGTCAAAGGTGGTAAANAAATGGTGGCAAGGGAAGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTGTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGTACATAAACG TGNACAATTTTTTTCCAGAAATTTT CAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAAaaaa                                                                                                                                                                        ]
[+] EMBL AU182989             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATGATGNCGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCA AAAAGTTAAAAGG CCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAAGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCNCGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTGTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGTACATAAACG TGNACAATTTTTTTCCAGAAATTTT CAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAAaaaa                                                                                                                                                                        ]
[+] EMBL BI799823             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCACAAAAGTTAAAAGG CCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAAGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTCTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATAAACG TGTACATTTTTTTCCCAGAAATTTTCCAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAATATTCATGAGTCATAGTTTGCAAGCTTTAGGAAAAACACCAATTGATTGTTGCTAT CCATACTCTGTAAAAa                                                                                                   ]
[+] EMBL BI800233             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       gCGATGATGATGAAGATGAGG CGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAACCAGATCAAGGATACCAGCC AAAAGTTAAAAGGCCCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAAGAAGAAACCTTCAAAATCCAGC AAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTCTCGGAAGGTTAGCGTGCCCCCCAGC AAACATCCACAGCTTTCATAGATGATCAGAACATAAACG TGTAC ATTTTTTTCCAGAAATTTT CAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAATATTCATGAGTCATAGTTTGCAAG TTTAGGAAAAAC CCCATTGATTGTTGCTATCCCATACTCTGTAAAAC AC GCCATACCCGT AATTAGATGATT GCTGTCTG AGTTCTGTT ATCTATTTAATTAAGGACCCAAAA                           ]
[+] EMBL AA751203             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTGTCGGAAGGTTAGCATGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATAAACGTTGTACAATTTTTTTCCAGAAATTTTCCAGTGTncc                                                                                                                                                                                                                  ]
[+] EMBL AU108747             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTGTCGGAAGGTTNGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGANCATAAACG TGTACAATTTTTTTCCAGAAATTTT CAGTGTACACCTAAACTAGGAAGGTAACTGGACGAGTTCGGCATGAATATTCATGAGTCATAGTTTGCAAG TTTAGGAAAAACACCAATTGATTGTTGCTATGCCATACTCTGTAAAACAACGGCCATACCAGTAAATTAGATGATTGGCTGTCTGAAGTTCTGTTCATCTATTTAATTAAGGATGCAATCTACCTGTCCAAAAAAAAAAAAAAAAAA]


>consensus_14539#0 ACGAAGGGAAGAAAAAAAAAAAAACTAAAATCTCATCGGAGATGGCGAGAGGCGGCGGCG TCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTT CTGCGCGGCGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTA CATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAA GCAGCAGGCGCTCCCGGCAACGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCGGA GAATGTGTGCAACCTGAAGAAGCAGGAGGCAGACTGGATGCTCAAGATCGATATCGTAGA GAAAGGCGATAAGTTCGAGCTCGTTGAGCAAGATGAGGAAGGGCACTGTAATGCAGAATG CAAAACCATTGAGCGTGCATGTCAGGAGGTGATGGGGTATGCTGATAGCGATGTTGCTGA ATTCGTCTACAAGAAAAAACCTTCAGCTGATCAGCTGGTCAAATTTCTTTGCAAAGATCT TTCTGAAGCATGCGTTGTGGATCCACCACCAGTTCCAAAAGATCGGGTCCCTGGCGAACC TTTTGCTGCTAAGCCATCAAAAGATGCTGAGATGGATAGGATATTGAAATCGATGGAGGG TATTCCAGGAGCTCCAAGCATGAAAATGTACTCTAGAGATGATCTGATGAAGAACAATTT TGGTGTTGACGGTGATGATGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAA CTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGT GAAGCAGATCAAGGATACAGGCAAAAAGTTAAAAGGCCATGTGAACAAGGTGTCAAAGGT GGTAAAGAAATGGTGGCAAGGGAAGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTA AATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTGTCGGAA GGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATAAACGT GTACAATTTTTTTCCAGAAATTTTCAGTGTACACCTAAACTAGGAAGGTAACTGGACGAG TTCGGCATGAATATTCATGAGTCATAGTTTGCAAGTTTAGGAAAAACACCAATTGATTGT TGCTATGCCATACTCTGTAAAACAACGGCCATACCAGTAAATTAGATGATTGGCTGTCTG AGTTCTGTTATCTATTTAATTAAGGACCCAAAATACCTGTCCAAAAAAAAAAAAAAAAAA



consensusID : consensus_14539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence
                              [ATGATCTGATGAAGAACAATTTTGGTGTTGACGGTGATGATGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCAAAAAGTTAAAAGGCCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAGGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTCTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATAAACGTGTACCTGCCCGGCG]

[+] EMBL BI118691             [ATGATCTGATGAAGAACAATTTTGGTGTTGACGGTGATGATGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCAAAAAGTTAAAAGGCCATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAGGAAGAAACCTTCAAAATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTGATTCTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATAAACGTGTACCTGCCCGGCG]


>consensus_14539#1 ATGATCTGATGAAGAACAATTTTGGTGTTGACGGTGATGATGACGATGATGATGAAGATG AGGACGATGACTTCCCAAAGAACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGA AAGATTTGAAACAACAAGTTGTGAAGCAGATCAAGGATACAGGCAAAAAGTTAAAAGGCC ATGTGAACAAGGTGTCAAAGGTGGTAAAGAAATGGTGGCAAGGGAGGAAGAAACCTTCAA AATCCAGCAAAACTGAACTCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCT GGAGATAGATTGATTCTCGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCA TAGATGATCAGAACATAAACGTGTACCTGCCCGGCG



consensusID : consensus_14539#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence
                              [CNGCGGCNTCGGGTNGCCATAGCGTCGCGGTAGCGCGGTNTNTCCTCCTNCTCCACCCTACCGCTTCTCGGNCAGGACGGGGCCAATGAAGGTNGCGACGGCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGGCGGTGAGATCTCGGCGCAGGTNGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTNCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGCACCTGAAGAAGCAGGAGGCAGACTGGATGCTCAAGATCGATATCGTAGAGAAAGGCGATAAGTCGAGCTCGTTGAGCAAGATGAGGA]

[+] EMBL C27044               [CNGCGGCNTCGGGTNGCCATAGCGTCGCGGTAGCGCGGTNTNTCCTCCTNCTCCACCCTACCGCTTCTCGGNCAGGACGGGGCCAATGAAGGTNGCGACGGCGCGAGGAAGGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGGCGGTGAGATCTCGGCGCAGGTNGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTNCCGGAGATCGAGATCATCGAGATCGCGGAGAATGTGTGCACCTGAAGAAGCAGGAGGCAGACTGGATGCTCAAGATCGATATCGTAGAGAAAGGCGATAAGTCGAGCTCGTTGAGCAAGATGAGGA]


>consensus_14539#2 CNGCGGCNTCGGGTNGCCATAGCGTCGCGGTAGCGCGGTNTNTCCTCCTNCTCCACCCTA CCGCTTCTCGGNCAGGACGGGGCCAATGAAGGTNGCGACGGCGCGAGGAAGGAGGACATC CCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGGCGGTGAGATCTCGGCGCAGGTNGCG AAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTNCCGGAGATCGAGATCATCGAGATC GCGGAGAATGTGTGCACCTGAAGAAGCAGGAGGCAGACTGGATGCTCAAGATCGATATCG TAGAGAAAGGCGATAAGTCGAGCTCGTTGAGCAAGATGAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14539#0      ACGAAGGGAAGAAAAAAAAAAAAACTAAAATCTCATCGGAGATGGCGAGAGGCGGCGGCG 60
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      TCGCGGTGGCCATGGCCGTCGCGGTGGCGGCGGTTGTCCTCCTGCTCCACCCTGCCGCTT 120
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      CTGCGCGGCGGCGGGGCCGAAGAAGGTGGCGACGGCCGCGAGGAAGGAGGACATCCCCTA 180
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      CATCCGGTGCCAGGTCTGCGAGCGGATCGCGCGGGAGATCTCGGCGCAGGTGGCGAAGAA 240
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      GCAGCAGGCGCTCCCGGCAACGAAGAAGGTGCCGGAGATCGAGATCATCGAGATCGCGGA 300
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      GAATGTGTGCAACCTGAAGAAGCAGGAGGCAGACTGGATGCTCAAGATCGATATCGTAGA 360
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      GAAAGGCGATAAGTTCGAGCTCGTTGAGCAAGATGAGGAAGGGCACTGTAATGCAGAATG 420
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      CAAAACCATTGAGCGTGCATGTCAGGAGGTGATGGGGTATGCTGATAGCGATGTTGCTGA 480
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      ATTCGTCTACAAGAAAAAACCTTCAGCTGATCAGCTGGTCAAATTTCTTTGCAAAGATCT 540
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      TTCTGAAGCATGCGTTGTGGATCCACCACCAGTTCCAAAAGATCGGGTCCCTGGCGAACC 600
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      TTTTGCTGCTAAGCCATCAAAAGATGCTGAGATGGATAGGATATTGAAATCGATGGAGGG 660
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      TATTCCAGGAGCTCCAAGCATGAAAATGTACTCTAGAGATGATCTGATGAAGAACAATTT 720
consensus_14539#1      --------------------------------------ATGATCTGATGAAGAACAATTT 22
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      TGGTGTTGACGGTGATGA-TGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGA 779
consensus_14539#1      TGGTGTTGACGGTGATGA-TGACGATGATGATGAAGATGAGGACGATGACTTCCCAAAGA 81
consensus_14539#2      ------CNGCGGCNTCGGGTNGCCATAGCGTCGCGGTAGCGCGGTNTNTCCTCCTNCTCC 54
                                ***    *  *  * **   *  *  *  * *     *  * ***      

consensus_14539#0      ACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTG 839
consensus_14539#1      ACTTGGGAAAAGTTTTCAAAGATAAGGGTTCACCAAAGAAAGATTTGAAACAACAAGTTG 141
consensus_14539#2      ACCC--TACCGCTTCTCGGNCAGGACGG--GGCCAATGAAGGTNGCGACGGCGCGAGGAA 110
                       **     *    ** **    *  * **    **** *** *    **     * **   

consensus_14539#0      TGAAG-CAGATCAAGGATACAGGCAAAAAGTTAAAAGGCCATGTG-AACAAGGTGTCAAA 897
consensus_14539#1      TGAAG-CAGATCAAGGATACAGGCAAAAAGTTAAAAGGCCATGTG-AACAAGGTGTCAAA 199
consensus_14539#2      GGAGGACATCCCCTACATCCGGTGCCAGGTCTGCGAGCGGATCGGCGGTGAGATCTCGGC 170
                        ** * **   *    ** * *    *    *   **   **  *     ** * **   

consensus_14539#0      GGTGGTAAAGAAATGGTGGCAAGGGAAGAAGA-AACCTTCAAAATCCAGCAAAACTGAAC 956
consensus_14539#1      GGTGGTAAAGAAATGGTGGCAAGGGAGGAAGA-AACCTTCAAAATCCAGCAAAACTGAAC 258
consensus_14539#2      GCAGGTNGCGAAGAAGCAGCAGGCGCTCCCGGCAACGAAGAAGGTNCCGGAGATCGAGAT 230
                       *  ***   ***   *  *** * *     *  ***    **  * * * * * *   * 

consensus_14539#0      TCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTG-ATTGT 1015
consensus_14539#1      TCTAAATACCACGGAATTTCCAGTCCAATTTTGCATTCTCCTGGAGATAGATTG-ATTCT 317
consensus_14539#2      CATCGAGATCGCGGAGAATGT-GTGCACCTGAAGAAGCA---GGAGGCAGACTGGATGCT 286
                         *  * * * ****   *   ** **  *    *  *    ****  *** ** **  *

consensus_14539#0      CGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATA 1075
consensus_14539#1      CGGAAGGTTAGCGTGCCCCCCAGCAAAACATCCACAGCTTTCATAGATGATCAGAACATA 377
consensus_14539#2      C--AAGATCGATAT----CGTAGAGAAAGGCGATAAGTCGAGCTCGTTGAGCAAGATGAG 340
                       *  *** *     *    *  **  ***       **      * * *** **  *    

consensus_14539#0      AACGTGTACAATTTTTTTCCAGAAATTTTCAGTGTACACCTAAACTAGGAAGGTAACTGG 1135
consensus_14539#1      AACGTGTAC-----CTGCCCGGCG------------------------------------ 396
consensus_14539#2      GA---------------------------------------------------------- 342
                        *                                                          

consensus_14539#0      ACGAGTTCGGCATGAATATTCATGAGTCATAGTTTGCAAGTTTAGGAAAAACACCAATTG 1195
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      ATTGTTGCTATGCCATACTCTGTAAAACAACGGCCATACCAGTAAATTAGATGATTGGCT 1255
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      GTCTGAGTTCTGTTATCTATTTAATTAAGGACCCAAAATACCTGTCCAAAAAAAAAAAAA 1315
consensus_14539#1      ------------------------------------------------------------
consensus_14539#2      ------------------------------------------------------------
                                                                                   

consensus_14539#0      AAAAA 1320
consensus_14539#1      -----
consensus_14539#2      -----
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)