cluster # 14540

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Oryza sativa
cluster # 14540 cluster # 14540 Sequences # 17 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14540#0 length = 765 sequences # 12
consensus_14540#1 length = 719 sequences # 3

consensus_14540#2 length = 589 sequences # 1
consensus_14540#3 length = 231 sequences # 1

consensusID : consensus_14540#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 765
fasta sequence

                              [GAAGATAAGATCACTCTTATCCATACGGCCGGGAAGACAATCCAGTTCCTCTGCTCTCGAGGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCG-TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTG-TTTCTCGG-TCGCCTGTGATGTATGGATGTACATAT-AGCT-AGTAATT-AGCTATTTAGCTATTACT-AGTTTGT-ACAT-GC-TTCAA-GTG-AACTATACTCTG-CCTCTGTACAT-ATATATATAGT-ACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTA-TGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCAGCGTCTTGTTACAGTTCCAATTGATCTAAACGAGGAACCAGTTNACTTTAAAAAAAAAAAAAA]

[+] EMBL AK119696             [GAAGATAAGATCACTCTTATCCATACGGCCGGGAAGACAATCCAGTTCCTCTGCTCTCGAGGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCG TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTG TTTCTCGG TCGCCTGTGATGTATGGATGTACATAT AGCT AGTAATT AGCTATTTAGCTATTACT AGTTTGT ACAT GC TTCAA GTG AACTATACTCTG CCTCTGTACAT ATATATATAGT ACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTA TGAATATTTCTTTCTTT                                                                                      ]
[+] EMBL CF325076             [              TCTTATCCATACGGCCGGGAAGACAATCCAGTTCCTCTGCTCTCGAGGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF326014             [              TCTTATCCATACGGCCGGGAAGACAATCCAGTTCCTCTGCTCTCGAGGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCATGTCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCG TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTG TTTCTCGG TCGCCTGTGATGTATGGATGTACATAT AGCT AGTAATT AGCTATTTAGCTATTACT AGTTTGT ACAT GC TTCAA GTG AACTATACTCTG CCTCTGTACAT ATATATATAGT ACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTA TGAATATTTCT                                                                                            ]
[+] EMBL AU075708             [                TTATCCATACGGCCGGGAAGACAATCCAGTTCCTCTGCTCTCGAGGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCG CCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCG TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCT                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU056939             [                      ATACGGCCGGGAAGACAATCCAGTTCCTCTGCTCTCGAGGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACNCCGGCCTCGCCATCNACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB685487             [                        acgctttGGAAGACAATCCAGTTCCTCTGCTCTCGAGGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCG TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTG TTTCTCGG TCGCCTGTGATGTATGGATGTACATAT AGCT AGTAATT AGCTATTTAGCTATTACT AGTTTGT ACAT GC TTCAA GTG AACTATACTCTG CCTCTGTACAT ATATATATAGT ACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTA TGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCAGCGTCTTGTTACAGTTCCAATTGATCTAAACGAGGAACCA                       ]
[+] EMBL CF325433             [                                GAAGACAATCCAGTTCCTCTGCTCTCGAGGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK120518             [                                                                                              GCTATGGTTGAAGTGGACGATGGATCCAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCG TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTG TTTCTCGG TCGCCTGTGATGTATGGATGTACATAT AGCT AGTAATT AGCTATTTAGCTATTACT AGTTTGT ACAT GC TTCAA GTG AACTATACTCTG CCTCTGTACAT ATATATATAGT ACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTA TGAATATTTCTTTCTTT                                                                                      ]
[+] EMBL BQ909201             [                                                                                                            GGACGATGGATCCAAACGCCAGATC GCGTGGATTAGCA GGCCGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCA GGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCG TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTG TTTCTCGG TCGCCTGTGATGTATGGATGTACATAT AGCT AGTAATT AGCTATTTAGCTATTACT AGTTTGT ACAT GC TTCAA GTG AACTATACTCTG CCTCTGTACAT ATATATATAGT ACTTTAGTAACATACC GATGTACATGTTTTGTACGTATCAGCGTACCCAATATTTCTTTCTTTTTCAGTTTTCAaaaa                                                                       ]
[+] EMBL AU071062             [                                                                                                                                                         GGCTGGGCATCCTCACCGTCAACNCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGANGNACCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATANCGCCGCCCGTNGC GCCGTTCGTTTGGGCCCTCGCCGTGGCAACNTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTGTTTTCTCGGTTCGCCTGTGATGTATGGATGTACATATAAGCTAAGTAATTAAGCTATTTAGCTATTACTNAGTTTGTAANATGGCTTTCAANGTGAAACTATACTCTGCCCTCTGTACATAATATATATAGTAACTTTAGTAAaaaaaaa                                                                                                                                     ]
[+] EMBL AU068319             [                                                                                                                                                                                                                                TTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCG TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTG TTTCTCGG TCGCCTGTGATGTATGGATGTACATAT AGCT AGTAATT AGCTATTTAGCTATTACT AGTTTGT ACAT GC TTCAA GTG AACTATACTCTG CCTCTGTACAT ATATATATAGT ACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTA TGAATATTTCTTTCTTTTTCAaaaaaa                                                                            ]
[+] EMBL AU056940             [                                                                                                                                                                                                                                                                                                                                                     TCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCCGCGCCCGTGGCGGCCG TCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTG TTTCTCGG TCGCCTGTGATGTATGGATGTACATAT AGCT AGTAATT AGCTATTTAGCTATTACT AGTTTGT ACAT GC TTCAA GTG AACTATACTCTG CCTCTGTACAT ATATATATAGT ACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTA TGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCAGCGTCTTGTTACAGTTCCAATTGATCTAAACGNGGAACAAGTTNACTTTAAAAAAAAAAAAAA]




>consensus_14540#0
GAAGATAAGATCACTCTTATCCATACGGCCGGGAAGACAATCCAGTTCCTCTGCTCTCGA
GGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATC
CAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCG
GCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGT
ACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGT
CCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCA
TGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCGTCGTTTGGGCCC
TCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTG
AAGCCGATCGATCGCTGTTTCTCGGTCGCCTGTGATGTATGGATGTACATATAGCTAGTA
ATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCCTCTG
TACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCG
TATGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCAGCGTCTTGTTACAGTTCC
AATTGATCTAAACGAGGAACCAGTTNACTTTAAAAAAAAAAAAAA

consensusID : consensus_14540#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 719
fasta sequence

                              [AAAAAAAAATTATGCAAAAAAAAAAAAAATTTTCAACGCGGANNANCATCTTGTTTTGGGTTTGCCGGGTCTTATCNGCCAANGGTAGNAGGNGNANGGGCGANGAACCAAACCGGNAATNGGGNGGATANCAGGGGGGNNGGNATCTTNACNNTCAAATCCGGCNTGNCANTTACCGGTTCCAGGGGGGANGCACCCGCGGNTCGCTTTGTCNTCGGTTTGNACACCGCCCTGNTCTTCTTCTTATTCCCCCGGGTTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCNTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCGTCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTGTTTCTCGGTCGCCTGTGATGTATGGATGTACATATAGCTAGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCCTCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTATGAATATTTCTTTCTTTTTCAGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL BE229174             [AAAAAAAAATTATGCAAAAAAAAAAAAAATTTTCAACGCGGANNANCATCTTGTTTTGGGTTTGCCGGGTCTTATCNGCCAANGGTAGNAGGNGNANGGGCGANGAACCAAACCGGNAATNGGGNGGATANCAGGGGGGNNGGNATCTTNACNNTCAAATCCGGCNTGNCANTTACCGGTTCCAGGGGGGANGCACCCGCGGNTCGCTTTGTCNTCGGTTTGNACACCGCCCTGNTCTTCTTCTTATTCCCCCGGGTTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCNTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCGTCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTGTTTCTCGGTCGCCTGTGATGTATGGATGTACATATAGCTAGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCCTCTGTACATATATATATAG                                                                                                                       ]
[+] EMBL AU075709             [                                                                                                                                                                                                                                                                                                                           TGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCGTCGTTTGGGCCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTGTTTCTCGGTCGCCTGTGATGTATGGATGTACATATAGCTAGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCCTCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTATGAATATTTCTTTCTTTTTCAGTTTTCAAAAA                                        ]
[+] EMBL AU057086             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATCTACACCTGAAGTGGTGAAGCCGATCGATCGCTGTTTCTCGGTCGCCTGTGATGTATGGATGTACATATAGCTAGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCCTCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTATGAATATTTCTTTCTTTTTCAGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14540#1
AAAAAAAAATTATGCAAAAAAAAAAAAAATTTTCAACGCGGANNANCATCTTGTTTTGGG
TTTGCCGGGTCTTATCNGCCAANGGTAGNAGGNGNANGGGCGANGAACCAAACCGGNAAT
NGGGNGGATANCAGGGGGGNNGGNATCTTNACNNTCAAATCCGGCNTGNCANTTACCGGT
TCCAGGGGGGANGCACCCGCGGNTCGCTTTGTCNTCGGTTTGNACACCGCCCTGNTCTTC
TTCTTATTCCCCCGGGTTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCC
GCNTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCGCCATGTTCGCGTGGAAGG
TCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCGTCGTTTGGGCCCTCGCCGTGGCAACCT
CGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTGGTGAAGCCGATCGATCGC
TGTTTCTCGGTCGCCTGTGATGTATGGATGTACATATAGCTAGTAATTAGCTATTTAGCT
ATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCCTCTGTACATATATATATAG
TACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATCAGCGTATGAATATTTCTTT
CTTTTTCAGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_14540#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [NAAANANAANACAAANNAANNGGGNNGGGGGGGGGGTTTNNTNAAACNCTTNCNTNANGTNNNGGGGGNNCNCNTTTNTTTTTTTTTNGTTNAAAANNCCCCNNNNNNNNNNTTTTTTTNNNNNNNNNNNNTTTTTNGCCCCNGGTCCCCCNGGGGGGGCCCCTTAAAGGGGGGGGGGGGNTTTTTAAAGTTTTTCNCCCCANNTTNGGGGGAGGTNGGGGGGTTAACCCCCCCCCCCGNGGGGCCTTTNTTTGGCCTTTCCCGGGCAACCTNGGTNGGAGGATTTTGGCCTTTTTTATTAAACACCTGAAGTGGTGAAGCCGATCGATCGCTGTTTTTTCGGTCGCCTGTGATGTATGGATGTACATATAGCTAGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCCTCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTAAGTATCAGCGTATGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCAGCGTCTTGTTACAGTTCCAATTGATTTAAACGAGGAACAAGTTCACTTT]

[-] EMBL BE229082             [NAAANANAANACAAANNAANNGGGNNGGGGGGGGGGTTTNNTNAAACNCTTNCNTNANGTNNNGGGGGNNCNCNTTTNTTTTTTTTTNGTTNAAAANNCCCCNNNNNNNNNNTTTTTTTNNNNNNNNNNNNTTTTTNGCCCCNGGTCCCCCNGGGGGGGCCCCTTAAAGGGGGGGGGGGGNTTTTTAAAGTTTTTCNCCCCANNTTNGGGGGAGGTNGGGGGGTTAACCCCCCCCCCCGNGGGGCCTTTNTTTGGCCTTTCCCGGGCAACCTNGGTNGGAGGATTTTGGCCTTTTTTATTAAACACCTGAAGTGGTGAAGCCGATCGATCGCTGTTTTTTCGGTCGCCTGTGATGTATGGATGTACATATAGCTAGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCCTCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTAAGTATCAGCGTATGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCAGCGTCTTGTTACAGTTCCAATTGATTTAAACGAGGAACAAGTTCACTTT]




>consensus_14540#2
NAAANANAANACAAANNAANNGGGNNGGGGGGGGGGTTTNNTNAAACNCTTNCNTNANGT
NNNGGGGGNNCNCNTTTNTTTTTTTTTNGTTNAAAANNCCCCNNNNNNNNNNTTTTTTTN
NNNNNNNNNNNTTTTTNGCCCCNGGTCCCCCNGGGGGGGCCCCTTAAAGGGGGGGGGGGG
NTTTTTAAAGTTTTTCNCCCCANNTTNGGGGGAGGTNGGGGGGTTAACCCCCCCCCCCGN
GGGGCCTTTNTTTGGCCTTTCCCGGGCAACCTNGGTNGGAGGATTTTGGCCTTTTTTATT
AAACACCTGAAGTGGTGAAGCCGATCGATCGCTGTTTTTTCGGTCGCCTGTGATGTATGG
ATGTACATATAGCTAGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTG
AACTATACTCTGCCTCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACAT
GTTTTGTAAGTATCAGCGTATGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCA
GCGTCTTGTTACAGTTCCAATTGATTTAAACGAGGAACAAGTTCACTTT

consensusID : consensus_14540#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [TGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCNNNACGCTCGTNNNCNNNNNNNNNNNN]

[+] EMBL CF197277             [TGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGCTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTCCTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCNNNACGCTCGTNNNCNNNNNNNNNNNN]




>consensus_14540#3
TGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCGGCCTCGCCATCTACCGC
TCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCGTACACCGCCCTGCTCCTC
CTCTTCTCCTGCCTCTCCGCCTTCGAGCGCGCGCCGCCCGGGTCCCCCGCGAGGGGCCGC
CTCAAGCGCGCGGTGTGGGCGCTCNNNACGCTCGTNNNCNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14540#0      GAAGATAAGATCACTCTTATCCATACGGCCGGGAAGACAATCCAGTTCCTCTGCTCTCGA 60
consensus_14540#3      ------------------------------------------------------------
consensus_14540#1      -----------------AAAAAAAAATTATGCAAAAAAAAAAAAAATTTTCAACGCGGAN 43
consensus_14540#2      ------------------------------------------------------------
                                                                                   

consensus_14540#0      GGTCTCGCCTGAGTCCTCATCCTGCCAAGTGCTAGCTATGGTTGAAGTGGACGATGGATC 120
consensus_14540#3      ------------------------------------------------------------
consensus_14540#1      NANCATCTTGTTTTGGGTTTGCCGGGTCTTATCNGCCAANGGTAGNAGGNGNANGGGCGA 103
consensus_14540#2      ------------------------------------------------------------
                                                                                   

consensus_14540#0      CAAACGGCAGATCGGCGTGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCG 180
consensus_14540#3      -----------------TGGATTAGCAGGGCGGGGCTGGGCATCCTCACCGTCAACTCCG 43
consensus_14540#1      NGAACCAAACCGGNAATNGGGNGGATANCAGGGGGGNNGGNATCTTNACNNTCAAATCCG 163
consensus_14540#2      ------------------------NAAANANAANACAAANNAANNGGGNNGG-GGGGGGG 35
                                                 *              *                 *

consensus_14540#0      GCCTCGCCATCTACCG-CTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCG 239
consensus_14540#3      GCCTCGCCATCTACCG-CTCCAGGGGGGACGCAGCCGCGGTCGCCTTCGTCCTCGGCTCG 102
consensus_14540#1      GCNT-GNCANTTACCGGTTCCAGGGGGGANGCACCCGCGGNTCGCTTTGTCNTCGGTTTG 222
consensus_14540#2      GTTTNNTNAAACNCTTNCNTNANGTNNNGGGGGNNCNCNTTTNTTTT--TTTTTNGTTNA 93
                       *  *    *    *       * *      *    * *       **  *  *  * *  

consensus_14540#0      TACACCGCCCTGCTCCTCCTCTTCTCCTGCCT--CTCCGCCTTCGAGCGCGCGCCGCCCG 297
consensus_14540#3      TACACCGCCCTGCTCCTCCTCTTCTCCTGCCT--CTCCGCCTTCGAGCGCGCGCCGCCCG 160
consensus_14540#1      NACACCGCCCTGNTCTTCTTCTTATTCCCCCGGGTTCCGCCTTCGAGCGCGCGCCGCCCG 282
consensus_14540#2      AAANNCCCCNNNNNNNNNNTTTTTTTNNNNNN--NNNNNNTTTTTNGC--------CCCN 143
                        *   * **          * ** *                **   **        *** 

consensus_14540#0      GGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCG 357
consensus_14540#3      GGTCCCCCGCGAGGGGCCGCCTCAAGCGCGCGGTGTGGGCGCTCNNNACGCTCGTNNNCN 220
consensus_14540#1      GGTCCCCCGCGAGGGGCCGCNTCAAGCGCGCGGTGTGGGCGCTCTCGACGCTCGTCACCG 342
consensus_14540#2      GGTCCCCCNGGGGGGGCCCCTTAAAG---GGGGGGGGGGGNTTTTTAAAGTTTTTCNCCC 200
                       ********  * ****** * * ***   * ** * ***   *    * * *  *   * 

consensus_14540#0      CCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCGTCGTTTGGG 417
consensus_14540#3      NNNNNNNNNNN------------------------------------------------- 231
consensus_14540#1      CCATGTTCGCGTGGAAGGTCGCGGCGCTCATGCCGCCGCCCGTGGCGGCCGTCGTTTGGG 402
consensus_14540#2      CANNTTNGGGG---GAGGTNGGGGGGTTAACCCCCCCCCCCGNGGGGCCTTTNTTT---G 254
                                                                                   

consensus_14540#0      CCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTG 477
consensus_14540#3      ------------------------------------------------------------
consensus_14540#1      CCCTCGCCGTGGCAACCTCGCTCGGAGGATTCTTGGCCTTCTTCATCTACACCTGAAGTG 462
consensus_14540#2      GCCTTTCCCGGGCAACCTNGGTNGGAGGATTTTGGCCTTTTTTATTAAACACCTGAAGTG 314
                                                                                   

consensus_14540#0      GTGAAGCCGATCGATCGCTGTTTCT-CGGTCGCCTGTGATGTATGGATGTACATATAGCT 536
consensus_14540#3      ------------------------------------------------------------
consensus_14540#1      GTGAAGCCGATCGATCGCTGTTTCT-CGGTCGCCTGTGATGTATGGATGTACATATAGCT 521
consensus_14540#2      GTGAAGCCGATCGATCGCTGTTTTTTCGGTCGCCTGTGATGTATGGATGTACATATAGCT 374
                                                                                   

consensus_14540#0      AGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCC 596
consensus_14540#3      ------------------------------------------------------------
consensus_14540#1      AGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCC 581
consensus_14540#2      AGTAATTAGCTATTTAGCTATTACTAGTTTGTACATGCTTCAAGTGAACTATACTCTGCC 434
                                                                                   

consensus_14540#0      TCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATC 656
consensus_14540#3      ------------------------------------------------------------
consensus_14540#1      TCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTACGTATC 641
consensus_14540#2      TCTGTACATATATATATAGTACTTTAGTAACATACCGGATGTACATGTTTTGTAAGTATC 494
                                                                                   

consensus_14540#0      AGCGTATGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCAGCGTCTTGTTACAG 716
consensus_14540#3      ------------------------------------------------------------
consensus_14540#1      AGCGTATGAATATTTCTTTCTTTTTCAGTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA 701
consensus_14540#2      AGCGTATGAATATTTCTTTCTTTTTCAGTTTTCACTCTTTGTTCCAGCGTCTTGTTACAG 554
                                                                                   

consensus_14540#0      TTCCAATTGATCTAAACGAGGAACCAGTTNACTTTAAAAAAAAAAAAAA 765
consensus_14540#3      -------------------------------------------------
consensus_14540#1      AAAAAAAAAAAAAAAAAA------------------------------- 719
consensus_14540#2      TTCCAATTGATTTAAACGAGGAACAAGTTCACTTT-------------- 589