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Oryza sativa
cluster # 14557 cluster # 14557       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14557#0 length = 1230 sequences # 15  
consensus_14557#1 length = 425 sequences # 1  
consensus_14557#2 length = 234 sequences # 1  

consensusID : consensus_14557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1230
fasta sequence
                              [TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT-AAGGCCAAAGGAGCAGACATT-GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG-AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA-AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA-ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA-AATCCAAGCTCTGC-TGCTTCAATGCACTATA-CTATACTACATCACTGCTGTA-TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT-GCAAAAT-GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAAAACATTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAGAAGCAATAAACATAGTTTACGTGTAAAAAA]

[+] EMBL AK066172             [TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAG                                                                                                             ]
[+] EMBL CF313515             [              CCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATTGGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AF458088             [                      CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCGCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACGAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAGAGCATTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAGAAGCAATAAACATAGTTTACGTGTAAAAAA]
[+] EMBL AK104481             [                      CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGGCGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTA                                                                                                          ]
[+] EMBL AK104797             [                      CGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACT                                                                                                                                                             ]
[+] EMBL AU184019             [                        GCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA753532             [                           GCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATN GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATNGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATNTGAAGGTGGGG AAGCTCTCAACTGGCGATNCTCTAGATATGTCT CCCATGACGAGTCAGCAATATTGACCAATGATGCTACAGTCANGGGATATGANGGGAG CGCGGTGGCATATGTNGCTGACATTGTTTC ACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AB110165             [                                                          CCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGG AAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCCCATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCA AGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAGAGCATT                                                                                        ]
[+] EMBL BP184380             [                                                          CCCCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCCATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAGTTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAAGGCCAAgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C28489               [                                                                                                                                                                                          CTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATACCATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTCGGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCATTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTT AAGGCCAAAGGAGCAGACATT GGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATCCCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTGAAGGAACTCAATTTGAAGGTTGGGAAAGCTCTCAACTGGCGATTCTCTAGATATGTCTTCCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU031688             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   canCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGA ACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTNAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAAATTTGTAGAATATTCTGGCAAAATGGTGCca                                                                                                                                                                         ]
[+] EMBL AU082334             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGNTGNGACTNATATTGTTGANGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGACACCTGNNTNCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCCGTGGGNAATGCATATCGGATCTTTGAATNATGAAGCTTANNCACCTGTTCATCA AATCNAAGCTCTGC TGCTTCAATGCACTATA CTATACTACATCACTGCTGTA T                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU184048             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACAAGGCAGTTACANAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATNAAGCTTAGAAACCTGTTCATCA AATCCAAGCTCTGN TGCTTCAATGCACTATA CTATACTACATCNCTGCTGTA TGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTNT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAAAAAAA                                                                                            ]
[+] EMBL AU031689             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGCATATCGGATCTTTGANTGATGAAGCTTAGAANCCTGTTCATCA AATCCAAGCTCTGC TGCTTCAATGCACTATACCTATACTACATCACTGCTGTA TGATTTTTCATGGGGATGCGTATNCAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCAANCTAAGATAAGTGNTGGGCGGTGGAGTTATTTTCTTAAAAAAA                                                                                            ]
[+] EMBL AU029928             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                tcAGAAACCTGNTCATCANATTCCAAGCTCTGCTTGCTTCAATGCACTATA CTATACTACATCACTGCTGTATTGATNTTTCANGGGGANGCGTATACAATTNTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTCT GCAAAAT GTGCAGTGTAATGAAACTAAATAAGGTGATATTCTGTCNAACTAAGATAAGTGGTGGNCGGTGGAGTTATTTTCTTNATNAAA                                                                                            ]


>consensus_14557#0 TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCC CCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCC ATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAG TTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATAC CATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTC GGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCA TTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAGGCCAAAGGAGCA GACATTGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATC CCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTG AAGGAACTCAATTTGAAGGTTGGGAAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCC CATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCG GTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGAT ATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGAACCTGGTTGCTGTGACA GCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCG GATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAAT GCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTT TAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATC AATAGCGTGGAATTTTGTAGAATATTCTGCAAAATGTGCAGTGTAATGAAACTAAATAAG GTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAAAACA TTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAG AAGCAATAAACATAGTTTACGTGTAAAAAA



consensusID : consensus_14557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence
                              [AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAATGCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAAAAAAAAAAAA]

[+] EMBL AU184020             [AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACAGCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAATGCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAAAAAAAAAAAA]


>consensus_14557#1 AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCGGTGGCAT ATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGATATTGTTG ATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACAGCAGCTC TGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCGGATCTTT GAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAATGCACTAT ACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTC CCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAAAAAAA AAAAA



consensusID : consensus_14557#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence
                              [TCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTGCAGTGTAATGAAACTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTTTTAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF313516             [TCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTGCAGTGTAATGAAACTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTTTTAAAAAAAAAAAAAAAAAAAAA]


>consensus_14557#2 TCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTTTAGGTTCCCCTGAGGCCC TGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATCAATAGCGTGGAATTTTGT AGAATATTTTGCAAAATGTGCAGTGTAATGAAACTAAATAAGGGGATATTCTGTCAAACT AAGATAAGTGGTGGGCGGTGGAGTTATTTTTTTAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14557#0      TCTCTCCTCCCCCACCACGCGGCGGCGGCAGCAGCAGCAGCTAGGGTTTAGAGAGCAGCC 60
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      CCCAATCCCATGGCCCCGCCCTCCGACTCCGACGACTCGGCCCCGATCCCCGCCGGCGCC 120
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      ATCTCCAAGCTCCTCATCGTCATAGCGATGCAGACGGAGGCGCTCCCGCTCGTCAACAAG 180
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      TTCCACCTCGTCGAGGCGGAGGAATCCATATTTCCTAAAGGTGCCCCATGGATTAGATAC 240
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      CATGGCAACTACAAAGGCCTTCACGTTGACCTTGTATGGCCTGGAAAAGATCCTGTTCTC 300
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      GGAGTTGACTGTGTTGGCACGGTATCAGCAGCACTTGTGACTTATGCTTCTATTCAGTCA 360
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      TTGAAGCCAGATCTGATCATCAATGCTGGCACTGCTGGTGGGTTTAAGGCCAAAGGAGCA 420
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      GACATTGGAGATGTCTACTTAGCATCCGATGTTGCATTCCACGATAGGAGAATACCTATC 480
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      CCTGTCTTCGACATGTATGGAATTGGAACACGAAAAACATTTGCTACCCCTAATATATTG 540
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      AAGGAACTCAATTTGAAGGTTGGGAAGCTCTCAACTGGCGATTCTCTAGATATGTCTCCC 600
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      CATGACGAGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCG 660
consensus_14557#1      -------AGTCAGCAATATTGAACAATGATGCTACAGTCAAGGATATGGAGGGAGCCGCG 53
consensus_14557#2      ----------------------TCACTGCTG-TATGATTTTTCATGGGGATGCGTATACA 37
                                              ** ** ** **   *     **  *** *      * 

consensus_14557#0      GTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGAT 720
consensus_14557#1      GTGGCATATGTTGCTGACATGTTTTCAACACCGGCAATCTTTGTGAAAGCTGTGACTGAT 113
consensus_14557#2      ATT-TTTAGGTTCCCCTGAGGCCCTGATCCCCCGTA---TGTACAAAATTCTTGGCAATT 93
                        *    ** *** *    * *   * * * ** * *   * *   ***    ** *   *

consensus_14557#0      ATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTCTGCAGAACCTGGTTGCTGTGACA 780
consensus_14557#1      ATTGTTGATGGGGAGAAACCAACAGCCGAGGAGTTTNTGCAGAACCTGGTTGCTGTGACA 173
consensus_14557#2      ACT-TGGATCAATAGCGTGGAATTTTGTAGAATATTTTGCAAAATGTG--CAGTGTAATG 150
                       * * * ***    **     **      ** *  ** **** **  **     *** *  

consensus_14557#0      GCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCG 840
consensus_14557#1      GCAGCTCTGGACAAGGCAGTTACAGAAGTGGTTGATTTCATCAGTGGGAAATGCATATCG 233
consensus_14557#2      AAA---CTAAATAAGGGGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGA-GTTA 206
                         *   **  * ****   *            * *  * *   *****   ** *  *  

consensus_14557#0      GATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAAT 900
consensus_14557#1      GATCTTTGAATGATGAAGCTTAGAAACCTGTTCATCAAATCCAAGCTCTGCTGCTTCAAT 293
consensus_14557#2      TTTTTTTAAAAAAAAAAAAAAAAAAAAA-------------------------------- 234
                         * *** **  *  **    * ***                                  

consensus_14557#0      GCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTT 960
consensus_14557#1      GCACTATACTATACTACATCACTGCTGTATGATTTTTCATGGGGATGCGTATACAATTTT 353
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      TAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATC 1020
consensus_14557#1      TAGGTTCCCCTGAGGCCCTGATCCCCCGTATGTACAAAATTCTTGGCAATTACTTGGATC 413
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      AATAGCGTGGAATTTTGTAGAATATTCTGCAAAATGTGCAGTGTAATGAAACTAAATAAG 1080
consensus_14557#1      AAAAAAAAAAAA------------------------------------------------ 425
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      GTGATATTCTGTCAAACTAAGATAAGTGGTGGGCGGTGGAGTTATTTTCTTAATAAAACA 1140
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      TTGAGACCATCTTCATTGTTTGCTCTACGATTGGTAAACTGTGAAAAAAAAAACCCGAAG 1200
consensus_14557#1      ------------------------------------------------------------
consensus_14557#2      ------------------------------------------------------------
                                                                                   

consensus_14557#0      AAGCAATAAACATAGTTTACGTGTAAAAAA 1230
consensus_14557#1      ------------------------------
consensus_14557#2      ------------------------------
                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)