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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1323 fasta sequence
[CTGTCTGTCAAAGACAGGACGCAGCCGCAGTGCCCCCC----TCTCTCTCTCTCTCTCTCTCTCTTCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCC--GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT-GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC-TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG-AATACTTGGAG-TGGGCCCAGCT-AAGTCACACGATG-AAAGTTTATCTGCCTGAATGTAATC-T-GCCAAAGGACTTC-TGGAAGAA-TGAATTAAA-GGATTTTTCTAACAAAAGCGGAGCTG-AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA-ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA-AGTGCTCTAGAA-AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT-GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAACAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCTGCAGCAGCAGTTCTCTCCAAATCCAGTTTCCTGCTCCTCTTGTAACTCCTTTGAGCAGCATTCACTTATTAGTTGCCAACAACAATTCCCGGCGGTATCATTTGATAAAACCAATTTGCACA]
[+] EMBL AK071448 [CTGTCTGTCAAAGACAGGACGCAGCCGCAGTGCCCCCC TCTCTCTCTCTCTCTCTCTCTCTTCTCTGGCTCCGGCGCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGGCGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAACAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCTGCAGCAGCAGTTCTCTCCAAATCCAGTTTCCTG ]
[+] EMBL CB666678 [ GTCAAAGCCTGGACTCAGCCGCAGTGCCCCCCTCTTTCTCTCTCTCTCTCTCTCTCTCTTCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCC GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGGCAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA A ]
[+] EMBL AK103950 [ TCTCTCTCTTCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCC GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGTCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGT ]
[+] EMBL CA753796 [ TCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCC GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAATGGATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCANACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCT ]
[+] EMBL AF280060 [ cgctGGCTCCGGCGCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGA CTGAAAGGGAGCAGGAGTGCTGAAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAAaaaa ]
[+] EMBL OSS1091A [ GCGCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGC ]
[+] EMBL AU070393 [ GCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGG ]
[+] EMBL AU064485 [ ggcnCGCCTCCCCTCGTTTTCC GAGAGAGAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTGAAATACTTGGAGTTGGGCCCAGCTAAAGTCACACGATGAAAAGTTTATCTGCCTGAATGTAATC TNNCCAAAGGACTTCTTNGAAGAATTGAATTAAA ]
[+] EMBL AU064486 [ ggcaCGCCTCCCCTCGTTTTCC GAGAGANAGAGAGAGAGAGGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGANCTAAGCAGCTTGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTN AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATCTT GCCAAAGGACTTC TGGAAGAA TGAATTAAAGGGATTTTTCTAACAAAAGCGGA ]
[+] EMBL CB674469 [ AGAGAGACGCAGGCGGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCGCACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTTCGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAAT GATGATGGTGGGAATCCCGCTTTGCTTGGTAGCTGCAATGACCGAGCTAAGCAGC TGCATGCTTCACCATCAGGTAGGTTATTAACAGCACTTGTAAGTG AATACTTGGAG TGGGCCCAGCT AAGTCACACGATG AAAGTTTATCTGCCTGAATGTAATC T GCCAAAGGACTTC TGGAAGAA TGAATTAAA GGATTTTTCTAACAAAAGCGGAGCTG AAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTG ]
[-] EMBL CB674470 [ TGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAGAATA ATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCCACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAACAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCT GCAGCAGTTCTCTCCAAATCCAGTTTCCTGCTCCTCTTGTAACTCCTTTGAGCAGCATTCACTTATTAGTTGCCAACAACAATTCCCGGCGGTATCATTTGATAAAACCAATTTGCACA]
[+] EMBL BQ908249 [ AGGAGAATANATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACATGAGGAGGCCACCATCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACNACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCACAGTGCTCTAGAANAACGTCCAGCTAGACCGGAAAGCTCGCCATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGATCGGGTCCCATTCACCATCGCGCTGCTTGGACCCCCTTGGGCCNTTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACcaaaaa ]
[+] EMBL AU174194 [ TTGCCTCCTATGGGAAGGCCAATGCCATCGTCACAGATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTGGAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAAaaaa ]
[-] EMBL CB674466 [ CCGAAGAGGGGGGTTTTCGGCTTCCAATGCAAGGAAGGATGAATACACCTGGAGATATGATGCTGATGATATCTGTGAAGAAGTGTTGCGAGCATCA AGTGCTGTAGAA AACGTCCAGCTAGACCGGAAAGCTCGC ]
[+] EMBL AU030737 [ gnAGGATGAATACNACTGGATATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCA AGTGCTCTAGAA AACGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGGTGCTGAGTAAAATCGGAAGGTGGGAT GGGTCCAATTCACCATTGCGCTGCTTGGACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGATTTGATTTCTGCTGGgaccaanaa ]
consensusID : consensus_14564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence
[ACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTNCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCNCAGTGTTGATCATGCCTACTGTACNCCTAGCTNATTTGTTTATGCNCCATATATGGGATTTGATTTCTGCTGGANAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAANAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCTGCAGCANTTNNCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094765 [ACCCCCTTGGGCCATTTGTATCGTTTTGGTTGCTNCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCNCAGTGTTGATCATGCCTACTGTACNCCTAGCTNATTTGTTTATGCNCCATATATGGGATTTGATTTCTGCTGGANAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCTAANAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCCTGCAGCANTTNNCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14564#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[GCGACGGTGCTGAGTAAAATCGGAAGGTGGGATGGGTCCAATTCNCCATTGCGCTGCTTGGNCCCCCTTGGGCCNTTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCNCCATATATGGGATTTGATTTCTGCTGGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097320 [GCGACGGTGCTGAGTAAAATCGGAAGGTGGGATGGGTCCAATTCNCCATTGCGCTGCTTGGNCCCCCTTGGGCCNTTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATGCTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCNCCATATATGGGATTTGATTTCTGCTGGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14564#0 CTGTCTGTCAAAGACAGGACGCAGCCGCAGTGCCCCCCTCTCTCTCTCTCTCTCTCTCTC 60
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 TTCTCCGGCTCCGGCGCCGCCTCCCCTCGTTTTCCGAGAGAGAGAGAGAGAGAGGCAGGC 120
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 GGAAGGGGGGATGGACGACTACGCGCGGGAGATGATGGAGCTCAAGACGCTCGTCACCCG 180
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 CACCCTCGAGAAGAAGGGCGTCCTCGCCAAGATCAGGGCTGAGCTAAGAGCAAGTGTGTT 240
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 CGAGGCCATAGAAGAGGAGGATAGGGTAGTGGAGAATGATGATGGTGGGAATCCCGCTTT 300
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 GCTTGGTAGCTGCAATGACCGAGCTAAGCAGCTGCATGCTTCACCATCAGGTAGGTTATT 360
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 AACAGCACTTGTAAGTGAATACTTGGAGTGGGCCCAGCTAAGTCACACGATGAAAGTTTA 420
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 TCTGCCTGAATGTAATCTGCCAAAGGACTTCTGGAAGAATGAATTAAAGGATTTTTCTAA 480
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 CAAAAGCGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCT 540
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 TGAAGGATATCTCAAATATGAGAATTTGTCTCAAACAAGGATGGCTGGTACTGGTAGGAG 600
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 AATAATCAATTCCGAGTCGGATCCGGCTCTAAATGCTGAACATAGGAACACGAGGAGGCC 660
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 ACCGTCGTCTTCTTCAGTTACAGGCTTGCCTCCTATGGGAAGGCCAATGCCATCGTCACA 720
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 GATGTCAGACCGAAGAGGGGGGTCTTCGGCTTCCAATGCAAGGAAGGATGAATACAACTG 780
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 GAGATATGATGCTGATGATATCTCTGAAGAAGTGTTGCGAGCATCAAGTGCTCTAGAAAA 840
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 CGTCCAGCTAGACCGGAAAGCTCGCAATCTGACGACTTCTTGGAGGCATCCAGGCGACGG 900
consensus_14564#1 ------------------------------------------------------------
consensus_14564#2 -----------------------------------------------------GCGACGG 7
consensus_14564#0 TGCTGAGTAAAATCGGAAGGTGGGATGGGTCCAATTCACCATTGCGCTGCTTGGACCCCC 960
consensus_14564#1 ------------------------------------------------------ACCCCC 6
consensus_14564#2 TGCTGAGTAAAATCGGAAGGTGGGATGGGTCCAATTCNCCATTGCGCTGCTTGGNCCCCC 67
*****
consensus_14564#0 TTGGGCCATTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATG 1020
consensus_14564#1 TTGGGCCATTTGTATCGTTTTGGTTGCTNCGGTGGGATTGTGCGCTTGCGTAGAAGAATG 66
consensus_14564#2 TTGGGCCNTTTGTATCGTTTTGGTTGCTGCGGTGGGATTGTGCGCTTGCGTAGAAGAATG 127
******* ******************** *******************************
consensus_14564#0 CTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCACCATATATGGGA 1080
consensus_14564#1 CNCAGTGTTGATCATGCCTACTGTACNCCTAGCTNATTTGTTTATGCNCCATATATGGGA 126
consensus_14564#2 CTCAGTGTTGATCATGCCTACTGTACTCCTAGCTCATTTGTTTATGCNCCATATATGGGA 187
* ************************ ******* ************ ************
consensus_14564#0 TTTGATTTCTGCTGGACAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCT 1140
consensus_14564#1 TTTGATTTCTGCTGGANAATCTTGTTCTTGTGCGTATAATTTTAGTTGCGTGTAGTTTCT 186
consensus_14564#2 TTTGATTTCTGCTGGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 247
*************** ** * ** * *
consensus_14564#0 AACAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCC 1200
consensus_14564#1 AANAAATTTGCTTTTGCTTACATCGGGAATTCTTGTTACAACGTGCATACAAACCTGCCC 246
consensus_14564#2 AAAAAAAAAA-------------------------------------------------- 257
** ***
consensus_14564#0 TGCAGCAGCAGTTCTCTCCAAATCCAGTTTCCTGCTCCTCTTGTAACTCCTTTGAGCAGC 1260
consensus_14564#1 TGCAGCAN---TTNNCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 303
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 ATTCACTTATTAGTTGCCAACAACAATTCCCGGCGGTATCATTTGATAAAACCAATTTGC 1320
consensus_14564#1 AAAAAAAA---------------------------------------------------- 311
consensus_14564#2 ------------------------------------------------------------
consensus_14564#0 ACA 1323
consensus_14564#1 ---
consensus_14564#2 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||