Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14570 cluster # 14570       Sequences # 17       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14570#0 length = 1183 sequences # 13  
consensus_14570#1 length = 401 sequences # 1  
consensus_14570#2 length = 328 sequences # 1  
consensus_14570#3 length = 259 sequences # 1  
consensus_14570#4 length = 181 sequences # 1  

consensusID : consensus_14570#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1183
fasta sequence
                              [GGCGCTTAGGCGCACGCACGCACGCACATCTCTCGAGCCCCTCACCCTCCCCTTCTTCCTCCTCCTTCCGCCGCATTGCTCGTCGCCGGCGG-GNCCA-ACCCTACCCCTCTNTCTCCCTCTCGAGCGGCGGCGGAGGCGGTTTCCGGTAGTGGCGGCGGCGGCGGGGACAGGAAGAAGCCATGTGCGATTTGGTGGCGAGAACGGGGCGGCACCAGCAGCGCTACGAGCATGGGCGTCGACTCGTGGCCGGGTGCATACCTTTTAGATAT-AAGGTNACAATGATGAAACTTCTAATGATGGCCAC-AGGAACTTTTGGAAGTTTTAATGATCAATTNCCAGAGTGGATCTGGTTTCCT-ATTTCCTAAGGGAGGATTGGA-GAATTAATAAACTGTTGAAGAGGCAGCTGCTCGTGAAGCTATTGAAGAAGCTGGAGTTCGAGGAGATTTAGTGCAATTATTGGGCTTCTACGACTTC-AAGAGCAAGA-CGCATCAAGACAAGTTCTGCCCCGAGGGGATGTGCAGAGCTGCGGTGTTCGCGCTTCGAGTTAAGG-AAGAGCTTGCCTCCTGGCCCGAGCAGAGCA--CCCGCAAGAGGACCTGGCTCACTC-TCAGTGAGGCG-GTGGAGCGGAGCCGTTA-CCCATGGGTGCGAGAGGCCCTTACAACGGGT-TTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTT-CAAGATGACCGCACCTCAAGCAT-CAGGGCCAGGGGTCATGCTCT-CTT-TT-ACCATGCTAGTGGTTT-C-AGAAAC-A-TGACCATTT-CGGC-GTATGT-GTGCTCC-CTGATGCTTC-AGTAGTTCC-GATCGCCCTAT-ATT-ACT-ACCTAGGATGGGACCAATCTT-AGTTC-TGGAAAT-GTCGAGAT-GGGACC-AATCTTAGTTCT-GGAAATGT-CGAGAATCGCTGGAATTGT-AAGTT-TT-AAT-TGATT-CTC-GCTGCT-ACCATTATCAGTCCTCTT-GGTTCTTTATTTCTTTTTACACCATG-CAGTATCAGCTGGT-GT-GTT-GCCCCTTGTGT-GTGCGC-AAAAATACCTGAAATCAAAGAAGGCTTTGT-GGATCAAAATGCTGCAATGCTCCTTCTGAGTTGGCTTGTTCGTGAGCACTG-GTCTCCAAAAGAATATTGCAGAAAGGGGGTAAAGAAATCCTGAT-GTTCTTTGTCAAAAA]

[+] EMBL C28751               [GGCGCTTAGGCGCACGCACGCACGCACATCTCTCGAGCCCCTCACCCTCCCCTTCTTCCTCCTCCTTCCGCCGCATTGCTCGTCGCCGGCGG GNCCATACCCTACCCCTCTNTCTCCCTCTCGAGCGGCGGCGGAGGCGGTTTCCGGTAGTGGCGGCGGCGGCGGGGACAGGAAGAAGCCATGTGCGATTTGGTGGCGAGAACGGGGCGGCACCAGCAGCGCTACGAGCATGGGCGTCGACTCGTGGCCGGGTGCATACCTTTTAGATAT AAGGTNACAATGATGAAACTTCTAATGATGGCCAC AGGAACTTTTGGAAGTTTTAATGATCAATTNCCAGAGTGGATCTGGTTTCCTAATTTCCTAAGGGAGGATTGGAGGAATTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK107375             [  CGCTTAGGCGCACGCACGCACGCACATCTCTCGAGCCCCTCACCCTCCCCTTCTTCCTCCTCCTTCCGCCGCATTGCTCGTCGCCGGCGGCGACCA ACCCTACCCCTCTCTCTCCCTCTCGAGCGGCGGCGGAGGCGGTTTCCGGTAGTGGCGGCGGCGGCGGGGACAGGAAGAAGCCATGTGCGATTTGGTGGCGAGAACGGGGCGGCACCAGCAGCGCTACGAGCATGGGCGTCGACTCGTGGCCGGGTGCATACCTTTTAGATATAAAGATAACAATGATGAAACTTCTGATGATGGACACAAGAAACTTGTGGAAGTTCTCATGATCAACTCCCAGAGTGGATCTGGTCTCCT ATTTCCTAAGGGAGGATGGGA GAATGATGAAACTGTTGAAGAGGCAGCTGCTCGTGAAGCTATTGAAGAAGCTGGAGTTCGAGGAGATTTAGTGCAATTATTGGGCTTCTACGACTTC AAGAGCAAGA CGCATCAAGACAAGTTCTGCCCCGAGGGGATGTGCAGAGCTGCGGTGTTCGCGCTTCGAGTTAAGG AAGAGCTTGCCTCCTGGCCCGAGCAGAGCA  CCCGCAAGAGGACCTGGCTCACTC TCAGTGAGGCG GTGGAGCGGAGCCGTTA CCCATGGGTGCGAGAGGCCCTTACAACGGGT TTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTT CAAGATGACCGCACCTCAAGCAT CAGGGCCAGGGGTCATGCTCT CTT TT ACCATGCTAGTGGTTT C AGAAAC A TGACCACTT CGGC GTATGT GTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATCTT AGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TT AAT TGATT CTC GCTGCT ACCATTATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGCGC AAAAATACCTGAAATCAAAGAAGGCTTTGT GGATCAATGTGCTGCAATGCTCCTTCTGAGTTGGCTTGTTCGTGAGCACTG GTCTCCAAAAGAATATTGCAGAAAGGGGGTAAAGAAATCCTGAT                ]
[+] EMBL C27223               [                                                                                                                                                                                                                                                                                                                                                                                                           TGTTGAAGAGGCAGCTGCTCGTGAAGCTATTGAAGAAGCTGGAGTTCGAGGAGATTTAGTGCAATTATTGGGCTTCTACGACTTC AAGAGCAAGA CGCATCAAGACAAGTTCTGCCCCGAGGGATTGTGCAGA NTGCGGTGTTCGCGCTTCGAGTTAAGG AAGAGCTTGCCTCCTGGCCCGAGCAGAG A  CCCGCAAGAGGACCTGGCTCACTC TCAGTGAGGCG GTGGAGCG  GNCGTTA CCCATGGGTGCGAGAGGCCCTTACAACGGGT TTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTNGACCCAAGTT CAAGATGACCGCACCTCANGCAT CAGGGCCAGGGGTCATGCTCT CTT TT ACCATTCTAGTGG TT C AG AAC ATTGACCATTT CGGC GTATGT GTntcc                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU092484             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  nCTTCTACGACTTCAAAGAGCAAGACCGCNTCAAGACAAGTTCT CCCCNAGGGGATTTGCAGAGCTGCGTTGTTCGCGCTTCGAGTTAAGG AAGAGNTTGCCTCTTGGCCCGAGCAGAGCA  CCCGCAAGAGGACCTGGCTCACTC TCAGTGAGCCG NTGGAGCGGAGCCGTTACCCCATGGGTGCGAGAGGCCCTTACAACGGGT TTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTT CAAGATGACCGCACCTCAAGCAT CAGGGCCAGGGGTCATGCTCT CTT TT ACCATGCTAGTGGTTT C AGAAAC A TGACCATTT CGGC GTATGT GTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATCTT AGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TT AAT TGATT CTC GCTGCT ACCATTATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGCGC AAAAATACCTGAAATCAAAGAAGGCTTTGT GGATCAATGTGCTGCAATGCTCCTTCTGAGTTGGCTTGTTCGTGAaaaaa                                                              ]
[+] EMBL BI797130             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      gtTTAAGGAAAGAGCTTGCCTCCTGGCCCGACCAGAGCAACCCCGCAAGAGGACCTGGCTCACTCTTCAGTG GGCG TTGGACCGGAGCCGTTA CCCATGGTTGCGAGAGGCCCTTACAACGGGTGTTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTT CAAGATGACCGCACCTCAAGCATGCAGGGCCAGGGGTCATGCTCTGCTTGTTGACCATGCTAGTGGTTTGC AGAAACAA TGACCATTTGCGGC GTATGTGGTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTATGATTGACTGACCTAGGATGGGACCAATCTTGAGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCTGGGAAATGTGCGAGAATCGCTGGAATTGTGAAGTTGTTGAATGTGATTGCTC GCTGCTGACCATTATCAGTCCTCTT GGTTCTTTATTTCTTTGTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGCGC    AATACCTGCAATC AAGAAGGCTTTGT GGATCAAAA                                                                                                       ]
[+] EMBL AU082656             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAGGACCTGGCTNACTC TCAGTGAGNCG GTGGAGCGGAGCCGTTA CCCATGGGTGCGAGAGGCCNTTACAACGGGT TTCACCACNTGGCATGAGAACTGGAGNAACGGGGACGACCATGTCGACCCAAGTT CAAGATGACCGCACNTCAAGCAT NAGGGCCAGGGGTCATGCTCT CTT TT ACCATGCTAGTGGTTT C AGAAAC A TGACCATTT CGGC GTATGT GTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATNTT AGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TT AAN TGATT CTC GCTGCT NCCATTATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGCGC AAAAATACCTGAAATCAAAGAAGGCTTTGT GNANCAAAAaaaaaaa                                                                                                ]
[+] EMBL BI803540             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      C TCATTGAGCCGTGTGGACCGGAGCCGTTA CCCATGGGTGCGAGAGGCCCTTACAACGGGT TTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTT CAAGATGACCGCACCTCAAGCAT CAGGGCCAGGGGTCATGCTCT CTT TT ACCATGCTAGTGGTTT C AGAAAC A TGACCATTT CGGC GTATGT GTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATCTT AGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TT AAT TGATT CTC GCTGCT ACCATTATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGCGC  AAAATACCTGAAATCAAAGAAGGCTTTGT GGATCAATGTGCTGCAATGCTCCTTCTGAaaaaaaa                                                                            ]
[+] EMBL BI804107             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTT CAAGATGACCGCACCTCAAGCAT CAGGGCCAGGGGTCATGCTCT CTT TT ACCATGCTAGTGGTTT C AGAAAC A TGACCATTT CGGC GTATGT GTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATCTT AGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCT GGAAATGT CGAGAGTCGCTGGAATTGT AAGTT TT AAT TGATT CTC GCTGCT ACCATTATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGCGC AAAAATACCTGAAATCAAAGAAGGCTTTGT GGATCAAAAaa                                                                                                     ]
[+] EMBL BI802472             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTCGACCCAAGTT CAAGATGACCGCACCTCAAGCAT CA GGCCAGGGGTCATGCTCT CTT TT ACCATGCTAGTGGTTT C AGAAAC A TGACCATTT CGGC GTATGT GTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATCTT AGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TT AAT TGATT CTC GCTGCT ACCATTATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGCGC AAAAATACCTGAAATCAAAGAAGGCTTTGT GGATCAATGTGCTGCAATGCTCCTTCTGAGTTGGCTTGTTCGTGAGCACTG GTCTCC AAAGAATATTGCAGAAAGGGGGTAAAGAAATCCTGAT GTTCTTTGTCAAAA ]
[+] EMBL BI801817             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gtGTTGCAAGAGGACCGCACCTCAAGCAT CA GGCCAGGGTTCATGCTCT CTT TT ACCATGCTGGGGGTTT CAAGAAAC A TGACCATTT CGGCTGTATGT GTGCTCCACTGATGCTTCAAGTAGTTCCAGATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATCTTGAGTTCATGGAAATGGTCGAGATCGGGACCAAATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TTGAAT TGATT CTCAGCTGCT ACCATGATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATGCCAGTATCAGCTGGTGGTCGTTCCCCCCTTGTGTGGTGCGCAAAAAATACCTGAAATCAAAGAAGGCTTTGT GGATCAATGTGCT CAATGCTCCTTCTGAGTTGGCTTGTTCGTGAGCACTGCGTCTCCAAAAGAATATT CAGAAAGGGGGTAAAGAAATCCTGATGGTTCTTTGTCAAAAA]
[+] EMBL AU165796             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GATGACCGCACCTCAAGCAT CAGGGCCAGGGGTCATGCTCT CTT TT ACCATGCTAGTGGTTT C AGAAAC A TGACCATTT CGGC GTATGT GTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATCTT AGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TT AAT TGATT CTC GCTGCT ACCATTATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGCGC AAAAATACCTGAAATCAAAGAAGGCTTTGTGGGATCAAAAanaa                                                                                                   ]
[+] EMBL AU085960             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GATGACCGCACCTCAAGCAT CAGGGCCAGGGGTCATGCTCT CTT TT ACCATGCTAGTGGTTT C AGAAAC A TGACCATTT CGGC GTATGT GTGCTCC CTGATGCTTC AGTAGTTCC GATCGCCCTAT ATT ACT ACCTAGGATGGGACCAATCTT AGTTC TGGAAAT GTCGAGAT GGGACC AATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TT AAT TGATT CTC GCTGCT ACCATTATCAGTCCTCTTGGGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTGGTGT GTCCNC NAAAAT CCTGAAATCAAAGAAGGCTTTGT GGATCAAAAaa                                                                                                     ]
[+] EMBL BI803209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTTC TGGAAAT GTCGAGAT GGGACC  ATCTTAGTTCT GGAAATGT CGAGAATCGCTGGAATTGT AAGTT TT AAT TGATT CTC GCTGCT ACCATTATCAGTCCTCTT GGTTCTTTATTTCTTTTTACACCATG CAGTATCAGCTGGT GT GTT GCCCCTTGTGT GTGC C  AAAATACCTGAAATC AAGAAGGCTTTGT GGATCAAAA                                                                                                       ]


>consensus_14570#0 GGCGCTTAGGCGCACGCACGCACGCACATCTCTCGAGCCCCTCACCCTCCCCTTCTTCCT CCTCCTTCCGCCGCATTGCTCGTCGCCGGCGGGNCCAACCCTACCCCTCTNTCTCCCTCT CGAGCGGCGGCGGAGGCGGTTTCCGGTAGTGGCGGCGGCGGCGGGGACAGGAAGAAGCCA TGTGCGATTTGGTGGCGAGAACGGGGCGGCACCAGCAGCGCTACGAGCATGGGCGTCGAC TCGTGGCCGGGTGCATACCTTTTAGATATAAGGTNACAATGATGAAACTTCTAATGATGG CCACAGGAACTTTTGGAAGTTTTAATGATCAATTNCCAGAGTGGATCTGGTTTCCTATTT CCTAAGGGAGGATTGGAGAATTAATAAACTGTTGAAGAGGCAGCTGCTCGTGAAGCTATT GAAGAAGCTGGAGTTCGAGGAGATTTAGTGCAATTATTGGGCTTCTACGACTTCAAGAGC AAGACGCATCAAGACAAGTTCTGCCCCGAGGGGATGTGCAGAGCTGCGGTGTTCGCGCTT CGAGTTAAGGAAGAGCTTGCCTCCTGGCCCGAGCAGAGCACCCGCAAGAGGACCTGGCTC ACTCTCAGTGAGGCGGTGGAGCGGAGCCGTTACCCATGGGTGCGAGAGGCCCTTACAACG GGTTTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTTCA AGATGACCGCACCTCAAGCATCAGGGCCAGGGGTCATGCTCTCTTTTACCATGCTAGTGG TTTCAGAAACATGACCATTTCGGCGTATGTGTGCTCCCTGATGCTTCAGTAGTTCCGATC GCCCTATATTACTACCTAGGATGGGACCAATCTTAGTTCTGGAAATGTCGAGATGGGACC AATCTTAGTTCTGGAAATGTCGAGAATCGCTGGAATTGTAAGTTTTAATTGATTCTCGCT GCTACCATTATCAGTCCTCTTGGTTCTTTATTTCTTTTTACACCATGCAGTATCAGCTGG TGTGTTGCCCCTTGTGTGTGCGCAAAAATACCTGAAATCAAAGAAGGCTTTGTGGATCAA AATGCTGCAATGCTCCTTCTGAGTTGGCTTGTTCGTGAGCACTGGTCTCCAAAAGAATAT TGCAGAAAGGGGGTAAAGAAATCCTGATGTTCTTTGTCAAAAA



consensusID : consensus_14570#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence
                              [AAGCCTTCCTCTGCCGACCAGACACCCGCTAGAGACCTGGCTCACTCTCAGTGAGCCGTGGACGGACCCTTTACCCATGGTGCGAGAGCCCCTTACAACGGGTTTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTTCAAGATGACCGCACCTCAAGCATCAGGGCCAGGGGTCATGCTCTCTTTTACCATGCTAGTGGTTTCTAGAAACATGACCATTTCGGCGTATGTGTGCTCTGATGCTTCAGTAGTTCCGATCGCCTTATATTTACTTACCTAAGGGATGGGGAACCAAATTCTTTAATTTCTGGGAAAATTTTCCGAAGGAATGGGGACCCAATTCTTTAAGTTTCTTGGGAAAATGTTCCGAAGAAATTCCCC]

[+] EMBL BI800124             [AAGCCTTCCTCTGCCGACCAGACACCCGCTAGAGACCTGGCTCACTCTCAGTGAGCCGTGGACGGACCCTTTACCCATGGTGCGAGAGCCCCTTACAACGGGTTTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTTCAAGATGACCGCACCTCAAGCATCAGGGCCAGGGGTCATGCTCTCTTTTACCATGCTAGTGGTTTCTAGAAACATGACCATTTCGGCGTATGTGTGCTCTGATGCTTCAGTAGTTCCGATCGCCTTATATTTACTTACCTAAGGGATGGGGAACCAAATTCTTTAATTTCTGGGAAAATTTTCCGAAGGAATGGGGACCCAATTCTTTAAGTTTCTTGGGAAAATGTTCCGAAGAAATTCCCC]


>consensus_14570#1 AAGCCTTCCTCTGCCGACCAGACACCCGCTAGAGACCTGGCTCACTCTCAGTGAGCCGTG GACGGACCCTTTACCCATGGTGCGAGAGCCCCTTACAACGGGTTTCACCACCTGGCATGA GAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTTCAAGATGACCGCACCTCAAGCA TCAGGGCCAGGGGTCATGCTCTCTTTTACCATGCTAGTGGTTTCTAGAAACATGACCATT TCGGCGTATGTGTGCTCTGATGCTTCAGTAGTTCCGATCGCCTTATATTTACTTACCTAA GGGATGGGGAACCAAATTCTTTAATTTCTGGGAAAATTTTCCGAAGGAATGGGGACCCAA TTCTTTAAGTTTCTTGGGAAAATGTTCCGAAGAAATTCCCC



consensusID : consensus_14570#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [GTTTCAGATAACATGACCATTTGCGGCGTATTGTGTGCTCCCTTGAGGCTGTCAGTAAGTTCCGATCAGCCCTGATATTGACTTACCTAGGATTGGGACCAAATCTTAGTTGCTGGTAAATGTTCGAGATGGGACACACATCTTAGTTTCTGGGAAATGGTGCGAGAATCGCTGGGAATTGTAAGTTGTTAATTGATTCTCGTCTGCTACCATTATCAGTCCTCTTGGTTCTTTATTTCTGTTTTGACACCATGCAGTATCAGCTGGTGTGTTCCACTTGTGTGTGCCAAAAATACCCCATCAAAGCAAGGCTTTGTGGATCAAAAAA]

[+] EMBL BI802644             [GTTTCAGATAACATGACCATTTGCGGCGTATTGTGTGCTCCCTTGAGGCTGTCAGTAAGTTCCGATCAGCCCTGATATTGACTTACCTAGGATTGGGACCAAATCTTAGTTGCTGGTAAATGTTCGAGATGGGACACACATCTTAGTTTCTGGGAAATGGTGCGAGAATCGCTGGGAATTGTAAGTTGTTAATTGATTCTCGTCTGCTACCATTATCAGTCCTCTTGGTTCTTTATTTCTGTTTTGACACCATGCAGTATCAGCTGGTGTGTTCCACTTGTGTGTGCCAAAAATACCCCATCAAAGCAAGGCTTTGTGGATCAAAAAA]


>consensus_14570#2 GTTTCAGATAACATGACCATTTGCGGCGTATTGTGTGCTCCCTTGAGGCTGTCAGTAAGT TCCGATCAGCCCTGATATTGACTTACCTAGGATTGGGACCAAATCTTAGTTGCTGGTAAA TGTTCGAGATGGGACACACATCTTAGTTTCTGGGAAATGGTGCGAGAATCGCTGGGAATT GTAAGTTGTTAATTGATTCTCGTCTGCTACCATTATCAGTCCTCTTGGTTCTTTATTTCT GTTTTGACACCATGCAGTATCAGCTGGTGTGTTCCACTTGTGTGTGCCAAAAATACCCCA TCAAAGCAAGGCTTTGTGGATCAAAAAA



consensusID : consensus_14570#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence
                              [TTCAGAAACATGACCATTTCGGCGTATGTGTGCTCCCCTGATGCTTCAGTAGTTCCGATCGCCCTATATGACTACCTAGGATGGGACCAATCTTAGTTCTGGAAATGTCGAGATGGGACCAATCTTAGTTCTGGAAATGTCGAGAATCGCTGGAATTGTAAGTTTTAATTGATTCTCGCTGCTACCATTATCAGTCCTCTTGGTTCTTTATTTCTTTTTACACCATCAGTATCAGCTGGTGTGTTGCCCAAAAAAAAAA]

[+] EMBL BI800972             [TTCAGAAACATGACCATTTCGGCGTATGTGTGCTCCCCTGATGCTTCAGTAGTTCCGATCGCCCTATATGACTACCTAGGATGGGACCAATCTTAGTTCTGGAAATGTCGAGATGGGACCAATCTTAGTTCTGGAAATGTCGAGAATCGCTGGAATTGTAAGTTTTAATTGATTCTCGCTGCTACCATTATCAGTCCTCTTGGTTCTTTATTTCTTTTTACACCATCAGTATCAGCTGGTGTGTTGCCCAAAAAAAAAA]


>consensus_14570#3 TTCAGAAACATGACCATTTCGGCGTATGTGTGCTCCCCTGATGCTTCAGTAGTTCCGATC GCCCTATATGACTACCTAGGATGGGACCAATCTTAGTTCTGGAAATGTCGAGATGGGACC AATCTTAGTTCTGGAAATGTCGAGAATCGCTGGAATTGTAAGTTTTAATTGATTCTCGCT GCTACCATTATCAGTCCTCTTGGTTCTTTATTTCTTTTTACACCATCAGTATCAGCTGGT GTGTTGCCCAAAAAAAAAA



consensusID : consensus_14570#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence
                              [AGACAAGTCCTGCCCCGAGGGATGTGCAGACTGCGGTGTTCCGCTTCGAGTTAAGGAAGAGCTTGCCTCCTGGCCGAGCAGACGACCCGCAAGAGGACCAGCCTCACTCTCAGTGAGCAATGGACGGACCGGTTAACCATGGTGCGCGAGGCTTACAACGGGTTTACACTGCATGAGAACT]

[+] EMBL AA749920             [AGACAAGTCCTGCCCCGAGGGATGTGCAGACTGCGGTGTTCCGCTTCGAGTTAAGGAAGAGCTTGCCTCCTGGCCGAGCAGACGACCCGCAAGAGGACCAGCCTCACTCTCAGTGAGCAATGGACGGACCGGTTAACCATGGTGCGCGAGGCTTACAACGGGTTTACACTGCATGAGAACT]


>consensus_14570#4 AGACAAGTCCTGCCCCGAGGGATGTGCAGACTGCGGTGTTCCGCTTCGAGTTAAGGAAGA GCTTGCCTCCTGGCCGAGCAGACGACCCGCAAGAGGACCAGCCTCACTCTCAGTGAGCAA TGGACGGACCGGTTAACCATGGTGCGCGAGGCTTACAACGGGTTTACACTGCATGAGAAC T



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      GGCGCTTAGGCGCACGCACGCACGCACATCTCTCGAGCCCCTCACCCTCCCCTTCTTCCT 60
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      CCTCCTTCCGCCGCATTGCTCGTCGCCGGCGGGNCCAACCCTACCCCTCTNTCTCCCTCT 120
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      CGAGCGGCGGCGGAGGCGGTTTCCGGTAGTGGCGGCGGCGGCGGGGACAGGAAGAAGCCA 180
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      TGTGCGATTTGGTGGCGAGAACGGGGCGGCACCAGCAGCGCTACGAGCATGGGCGTCGAC 240
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      TCGTGGCCGGGTGCATACCTTTTAGATATAAGGTNACAATGATGAAACTTCTAATGATGG 300
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      CCACAGGAACTTTTGGAAGTTTTAATGATCAATTNCCAGAGTGGATCTGGTTTCCTATTT 360
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      CCTAAGGGAGGATTGGAGAATTAATAAACTGTTGAAGAGGCAGCTGCTCGTGAAGCTATT 420
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      GAAGAAGCTGGAGTTCGAGGAGATTTAGTGCAATTATTGGGCTTCTACGACTTCAAGAGC 480
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      AAGACGCATCAAGACAAGTTCTGCCCCGAGGGGATGTGCAGAGCTGCGGTGTTCGCGCTT 540
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------AAGCCTTCCTCT--GCCGA--CCAGACACCCGCTAGAG-ACCTGGCTC 43
consensus_14570#4      -------------AGACAAGTCCT--GCCC---CGAGGGATGTGC---AG-ACTGCGGTG 38
consensus_14570#0      CGAGTTAAGGAAGAGCTTGCCTCCTGGCCCGAGCAGAGCACCCGCAAGAGGACCTGGCTC 600
consensus_14570#2      --------------------GTTTCAGATAACATGAC-CATTTGC---GGCGTATTGTGT 36
consensus_14570#3      ----------------------TTCAGA-AACATGAC-CATTT-C---GGCGTAT-GTGT 31
                                                 *            *    *    *      *   

consensus_14570#1      ACTCTCAGTGAGCCGT--GGACGGACCC-TTTACCCATGGTGCGAGAGCCCCTTACAACG 100
consensus_14570#4      TTCCGCTTCGAGTTAA--GGAAGAGCTTGCCTCCTGGCCGAGCAGACGACCCGCAAGAGG 96
consensus_14570#0      ACTCTCAGTGAGGCGGTGGAGCGGAGCCGTTACCCATGGGTGCGAGAGGCCCTTACAACG 660
consensus_14570#2      GCTCCCTTGAGGCTGTCAGTAAGTTCCGATCAGCCCTGATATTGACTTACCTAGGATTGG 96
consensus_14570#3      GCTCCCCTGATGCT-TCAGTA-GTTCCGATC-GCCCT-ATAT-GACT-ACCTAGGAT-GG 84
                          * *     *      *   *          *               **        *

consensus_14570#1      GGTTTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTTCA 160
consensus_14570#4      ACCAGCCTCACTCTCAGTGAGCAATGGACGGACCGGT-TAACCATGGTGCGCGAGGCTTA 155
consensus_14570#0      GGTTTCACCACCTGGCATGAGAACTGGAGCAACGGGGACGACCATGTCGACCCAAGTTCA 720
consensus_14570#2      GACCAAATCTTAGTTGCTGGTAAATGTTCGAGATGGGACACACATCTTAGTTTCTG--GG 154
consensus_14570#3      GACCAA-TCTTAGTT-CTGG-AAATGT-CGAGATGGGAC-CA-ATCTTAGTTCT----GG 134
                               *        **   * **        **       **               

consensus_14570#1      AGATGACCGCACCTCAAGCATCAGGGCCAGGGGTCATGCTCTCTTTTACCATGCTAGTGG 220
consensus_14570#4      CAACGGGTTTACACT--GCATGAGAACT-------------------------------- 181
consensus_14570#0      AGATGACCGCACCTCAAGCATCAGGGCCAGGGGTCATGCTCTCTTTTACCATGCTAGTGG 780
consensus_14570#2      AAATGGTGCGAGAATC-GCTGGGAATTGTAAGTTGTTAATTGATTCTCGTCTGCTACCAT 213
consensus_14570#3      AAATG--TCGAGAATC-GCTGG-AATTGTAAGTT-TTAATTGATTCTCG-CTGCTACCAT 188
                         * *     *      **                                         

consensus_14570#1      TTTCTAGAAACATGACCATTTCGGCGTATGTGTGCTC--TGATGCTTCAGTAGTTCCGAT 278
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      TTTC-AGAAACATGACCATTTCGGCGTATGTGTGCTCCCTGATGCTTCAGTAGTTCCGAT 839
consensus_14570#2      TATCAGTCCTCTTGGTTCTTTATTTCTGTTTTGACACCATGCAGTATCAGCTGGTGTGTT 273
consensus_14570#3      TATCAGTCCTCTTGGTTCTTTATTTCT--TTTTACACCAT-CAGTATCAGCTGGTGTGTT 245
                                                                                   

consensus_14570#1      CGCCTTATATTTACTTACCTAAGGGATGGGGAACCAAATTCTTTAATTTCTGGGAAAATT 338
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      CGCCCTATATTA--CTACCTAGGATGGGACCAATCTTAGTTCTGGAAATGTCGAGATGGG 897
consensus_14570#2      CCACTTGTGTGTGCCAAAAATACCCCATCAAAGCAAGGCTTTGTGGATCAAAAAA----- 328
consensus_14570#3      GCCC------AAAAAAAAAA---------------------------------------- 259
                                                                                   

consensus_14570#1      TTCCGAAGGAATGGGGACCCAATTCTTTAAGTTTCTTGGGAAAATGTTCCGAAGAAATTC 398
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      ACCAATCTTAGTTCTGGA--AATGTCGAGAATCGCTGGAATTGTAAGTTTTAATTGATTC 955
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      CCC--------------------------------------------------------- 401
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      TCGCTGCTACCATTATCAGTCCTCTTGGTTCTTTATTTCTTTTTACACCATGCAGTATCA 1015
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      GCTGGTGTGTTGCCCCTTGTGTGTGCGCAAAAATACCTGAAATCAAAGAAGGCTTTGTGG 1075
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------------------
consensus_14570#4      ------------------------------------------------------------
consensus_14570#0      ATCAAAATGCTGCAATGCTCCTTCTGAGTTGGCTTGTTCGTGAGCACTGGTCTCCAAAAG 1135
consensus_14570#2      ------------------------------------------------------------
consensus_14570#3      ------------------------------------------------------------
                                                                                   

consensus_14570#1      ------------------------------------------------
consensus_14570#4      ------------------------------------------------
consensus_14570#0      AATATTGCAGAAAGGGGGTAAAGAAATCCTGATGTTCTTTGTCAAAAA 1183
consensus_14570#2      ------------------------------------------------
consensus_14570#3      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)