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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1587 fasta sequence
[TTTTTTTTTTTTTTTTTTTGGCCATAATGCACGAAGATATATTCATTAGTTT-CACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCA-GTCCAGTCTGTTTTTTTTTAGATAATGACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATTCGTAGC-TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGAAAATGGAGGACCAT-CCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCAAAAAATCACTTGTGGTCTTATTCTTATTATTATCCAGATAGCATGTGACGTAGCAAGCAATGTCGTTGCGATGGAAGTAATATAAGATTGGCCTACTTCACGACTGCGATATATCTGTACGAACTGTGCATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCTCATAGACCTGTGCCTTCTGAAGGCTCATGTTGTCAGTAAGTGCAGCTACATAGTACCTTGGAGTAAATCTATCCTTCTGAAGTGTAGTTACAACATTCATCATTTCTGCAGTATGTCCTCCAGACCCAAGGACGATGAGAGACCGCATTCCAGCAGCTGAAGCTGAGAGTTTCGAAGGCATGTGA-CCGCTGTGATACATCACATATGCGAAGCGGACAAGAAGCAAAGACACAAGTACTGGAAAGGCGCAACACACGGCCATGGAGACATCCGGCCCCATCTCTGTCAGGGCTGACGAGATAAGATATCACGCAGGATTTTGCTTGCCACTAGCGCCCCCTGTCAGCCGTCCTGCGTCGTTGTTAGCCGCTGTGCTTGACCTCAACCGCCGTGCGCCACATTCAGCCACTACGCGGCAGCCCTCCGCCGCCGAGCCACCCTCACTGTAGGGCGTAGCCAGCAGGCGAGCAGGAGGCGGGAAGCGAACTAGCCAAGCAGATCGGCCTCCCGCGGCTCTGGGCTCCTCGCCGGCTAGCGAAGCAGATCGGCGGCCGGCCCCTCGCCAGTCGCGGGATCGCAGCTCGCGCACTCTCCGTCGCCGCCGTACCGCCCGTCGCCCGCCGCAATCGCACGCTCACACCCGCAGCCAGCCGTCCCCACTCCCGTGTCCTCTCAGAGTTTCTCTCGACGTGCGTCTCAGAGACGCTCTCAGCTTGTGTGCTGTGCCGGTGCGCCGCCGCCACGCCTCTGCGACGCTGCGCCGCCGCCGCGCCGCCGCGGGCGCTGTCCCGCCGCGCCTCTGCACCGCCGGAAGAGAGGGGAAAGGAGGGGACAGGACGGTGGAGAGGGCG]
[+] EMBL CA761990 [TTTTTTTTTTTTTTTTTTTGGCCATAATGCACGAAGATATATTCATTAGTTT CACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCA GTCCAGTCTGTTTTTTTTTAGATAATAACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAAAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGGGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATTCGTAGC TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAAAAAATGGAGGACCAT CCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCAAAAAATCACTTGGGGTCTTATTCCTATTATTATCCAGATAGCATGTGACGTANCAAGCAATGTCGTTGCGATGGAAGTAATATAAGATTGGCCTACTTCACGACTGCNATATATCTGAACGAACTGTGCATTCTCAAC ]
[-] EMBL BM419382 [ TTTTTTCCTGGCCATAATGCACGAAGATATATTCATTAGTTT CACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCAGGTCCAGTCTGTTTTTTTTTAGATAATAACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATTCGTAGC TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGC ]
[-] EMBL CA767583 [ ATAATGCNCGAAGATATATTCATTAGTTTNCNCCAGTAATAGAAGGANCTGGAGGTNCAAAATGAGTATAGTTACATAGTATAGTTACNCAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCA GTCCAGTCTGTTTTTTTTTAGATAATAACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATTCGTAGC TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGAAAATGGAGGACCAT CCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCAAAAAATCACTTGTGGTCTTATTCCTATTATTATCCAGATAGCATGTGACGTAGCAAGCAATGTCGTTGCGATGGAAGTAATATAAGATTGGCCTACTTCACGACTGCGATATATCTGTACGAACTGTGCATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCTCATAGACCT ]
[+] EMBL CF327151 [ tttttTGCACGAAGATATATTCATTAGTTT CACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCA GTCCAGTCTGTTTTTTTTTAGATAATGACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATTCGTAGC TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGAAAATGGAGGACCAT CCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAAT ]
[+] EMBL CF327224 [ tttttTGCACGAAGATATATTCATTAGTTT CACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCA GTCCAGTCTGTTTTTTTTTAGATAATGACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATTCGTAGC TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGAAAATGGAGGACCAT CCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCAT ]
[-] EMBL AK063861 [ CACGAAGATATATTCATTAGTTT CACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCA GTCCAGTCTGTTTTTTTTTAGATAATGACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATTCGTAGC TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGAAAATGGAGGACCAT CCCAAACCA ]
[+] EMBL BQ529311 [ GTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCA GTCCAGTCTGTTTTTTTTTAGATAATAACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATT ]
[+] EMBL CB673038 [ TACATAGTATAGTTACACGAAATTACTTCTATCCAGATGCGATATCTCCTCGGGTCATGGCATCTATCTATCACTCCA GTCCAGTCTGTTTTTTTTTAGATAATGACCAGTCCAGTCTGTTGAAGAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAACATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACTAAGAACTGATCAGCTATTCGTAGC TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGAAAATGGAGGACCAT CCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCAAAAAATCACTTGTGGTCTTATTCTTATTATTATCCAGATAGCATGTGACGTAGCAAGCAATGTCGTTGCGATGGAAGTAATATAATATTGGCCTACTTCACGACTGCGATATATCTGTACGAACTGTGCATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCTCATAGACCTGTGCCTTCTGAAGGCTCATGTTGTCAGTAAGTGCATCTACATAGTACCTTGGAGTAAATCTATCCTTCTGAAGTGTAGTTACGACATTCATCATTTCTGCAGTATG ]
[+] EMBL CB673037 [ CATAGTATAGTTACACAAAATTACTTCTATCCTTATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCA GTCCAGTCTGTTTTTTTTTAGATAATGACCAGTCCAGTCTGTTGAAAAGGAAGAAAAATATTTGACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCATTTTGCTGTAAAGCAATATTATCATCTATGCGTGAATCTTTACATTAAACGGCCGGCATAGCATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGAACTGATCAGCTATTCGTAGC TTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGAAAATGGAGGACCAT CCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCAAAAAATCACTTGTGGTCTTATTCTTATTATTATCCAGATAGCATGTGACGTAGCAAGCAATGTCGTTGCGATGGAAGTAATATAAGATTGGCCTACTTCACGACTGCGATATATCTGTACGAACTGTGCATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCTCATAGACCTGTGCCTTCTGAAGGCTCATGTTGTCAGTAAGTGCAGCTACATAGTACCTTGGAGTAAATCTATCCTTCTGAAGTGTAGTTACAACATTCATCATTTCTGCAGTATGTCCTCCAGACCC ]
[+] EMBL CB660059 [ atcTCCTATCATTGTACAACAGTAAACCGCTTAATGAAAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGAAAATGGACGACCAT CCCAAACCAAGCACCTTCAGAAGAAAAGCCGACACACACAGAGGAATGCATGTCCCTGGACCATTGCAAAAAATCACTTGTGGTCTTATTCTTATTATTATCCAGATAGCATGTGACGTAGCAAGCAATGTCGTTGCGATGGAAGTAATATAAGATTGGCCTACTTCACGACTGCGATATATCTGTACGAACTGTGCATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCTCATAGACCTGTGCCTTCTGAAGGCTCATGTTGTCAGTAAGTGCACCTACATAGTACCTTGGAGTAAATCTATCCTTCTGAAGTGTACTTACAACATTCATCATTTCTGCAGTATGTCCTCCACACCCAAGGACGATGAGAGACCGCATTCCAGCAGCTGAAGCTGAGAGTTTCGAAGGCATGTGA CCGCTGTGATACATCACATATGCGAAGCGGACAACAAGCAAAGACACAAGTACTGGAAAGGCGCAACACACGGTCATGGAGACATCCCGCCCCATCTCTGTCAGGGCTGACGAGATAAGATATCCCCCAGGATTTTGCTTGCCACTAGCG ]
[-] EMBL CF327223 [ AATGCTTTCGATGTAGAAAATGGAGGACCAT CCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCAAAAAATCACTTGTGGTCTTATTCTTATTATTATCCAGATAGCATGTGACGTAGCAAGCAATGTCGTTGCGATGGAAGTAATATAAGACTGGCCTACTTCACGACTGCGATATATCTGTACGAACTGTGCATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCTCATAGACCTGTGCCTTCTGAAGGCTCATGTTGTCAGTAAGTGCAGCTACATAGTACCTTGGAGTAAATCTATCCTTCTGAAGTGTAGTTGCAACATTCATCATTTCTGCAGTATGTCCTCCAGACCCAAGGACGATGAGAGACCGCATTCCAGCAGCTGAAGCTGAGAGTTTCGAAGGCATGTGA CCGCTGTGATACATCACATATGCGAAGCGGACAAGAAGCAAAGACACAAGTACTGGAAAGGCGCAACACACGGCCATGGAGACATCCGGCCCCATCTCTGTCAGGGCTGACGAGATAAGATATCACGCAGGATTTTGCTTGCa ]
[-] EMBL CF327150 [ TTTCGATGTAGAAAATGGAGGACCATCCCCAAACCAAGCACCTTCAGAAGAAAAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCAAAAAATCACTTGTGGTCTTATTCTTATTATTATCCAGATAGCATGTGACGTAGCAAGCAATGTCGTTGCGATGGAAGTAATATAAGACTGGCCTACTTCACGACTGCGATATATCTGTACGAACTGTGCATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCTCATAGACCTGTGCCTTCTGAAGGCTCATGTTGTCAGTAAGTGCAGCTACATAGTACCTTGGAGTAAATCTATCCTTCTGAAGTGTAGTTGCAACATTCATCATTTCTGCAGTATGTCCTCCAGACCCAAGGACGATGAGAGACCGCATTCCAGCAGCTGAAGCTGAGAGTTTCGAAGGCATGTGA CCGCTGTGATACATCACATATGCGAAGCGGACAAGAAGCAAAGACACAAGTACTGGAAAGGCGCAACACACGGCCATGGAGACATCCGGCCCCATCTCTGTCAGGGCTGACGAGATAAGATATCACGCAGGATTTTGCTTGCa ]
[-] EMBL CB000797 [ ACGTAGCAAGCAATGTCGTTGCGATGGAAGTAATATAAGATTGGCCTACTTCACGACTGCGATATATCTGTACGAACTGTGCATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCTCATAGACCTGTGCCTTCTGAAGGCTCATGTTGTCAGTAAGTGCAGCTACATAGTACCTTGGAGTAAATCTATCCTTCTGAAGTGTAGTTACAACATTCATCATTTCTGCAGTATGTCCTCCAGACCCAAGGACGATGAGAGACCGCATTCCAGCAGCTGAAGCTGAGAGTTTCGAAGGCATGTGA CCGCTGTGATACATCACATATGCGAAGCGGACAAGAAGCAAAGACACAAGTACTGGAAAGGCGCAACACACGGCCATGGAGACATCCGGCCCCATCTCTGTCAGGGCTGACGAGATAAGATATCACGCAGGATTTTGCTTGCCACTAGCGCCCCCTGTCAGCCGTCCT ]
[-] EMBL CB673036 [ tgGAAGGCATGTGACCCGCTGTGATACATCACATATGCGAAGCGGACAAGAAGCAAAGACACAAGTTCTGGAAAGGCGCAACACACGGCCATGGAGACATCCGGCCCCATCTGTGTCAGGGCTGACGAGATAAGATATCACGCAGGATTTTGCTTGCCACTAGCGCCCCCTGTCAGCCGTCCTGCGTCGTTGTTAGCCGCTGTGCTTGACCTCAACCGCCGTGCGCCACATTCAGCCACTACGCGGCAGCCCTCCGCCGCCGAGCCACCCTCACTGTAGGGCGTAGCCAGCAGGCGAGCAGGAGGCGGGAAGCGAACTAGCCAAGCAGATCGGCCTCCCGCGGCTCTGGGCTCCTCGCCGGCTAGCGAAGCAGATCGGCGGCCGGCCCCTCGCCAGTCGCGGGATCGCAGCTCGCGCACTCTCCGTCGCCGCCGTACCGCCCGTCGCCCGCCGCAATCGCACGCTCACACCCGCAGCCAGCCGTCCCCACTCCCGTGTCCTCTCAGAGTTTCTCTCGACGTGCGTCTCAGAGACGCTCTCAGCTTGTGTGCTGTGCCGGTGCGCCGCCGCCACGCCTCTGCGACGCTGCGCCGCCGCCGCGCCGCCGCGGGCGCTGTCCCGCCGCGCCTCTGCACCGCCGGAAGAGAGGGGAAAGGAGGGGACAGGACGGTGGAGAGGGCG]
consensusID : consensus_14577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence
[TTTTTTTTTTAGCCTATCCGCCTTTGCCTGGCCATAATGCACGAAGATATATTCATTAGTTTCACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCAGTCCAGTCTGTTTTTTTTTAGATAATAACCAGTCCAGTCTGTTGAAAAGGCAAGAAAAATATTTGCACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCCATTTGGCTGTCAACAGCAATATTATCATCTATGCGTGCAATCTTTCACATTAAACGGCCGGCATAGCCATGCTCGAGGGTATTTTGCTGCCAGCTGGGGCCACTGCACGAAGACACTGATCAGCTATTCGTAGCTTGTACCAACAGTAAACCGCTTAATGAACAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGACAACNTGGAGGACCATCCCAAACAAGCACCTTCAGAAGAANNAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCACAAAAATCACTTGTGGTCTTATTCTTATTATTATCCAGATAGCCAGTGTGACCGTAGCCAAGCACATGTCGTTGACATGGGNAGTAAATATACAGATGGGCTCACTTCACGACTGCGCACAATATCTGGTCACGAACCTGGTGGCATTCCT]
[-] EMBL BQ906941 [TTTTTTTTTTAGCCTATCCGCCTTTGCCTGGCCATAATGCACGAAGATATATTCATTAGTTTCACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTTACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCACTCCAGTCCAGTCTGTTTTTTTTTAGATAATAACCAGTCCAGTCTGTTGAAAAGGCAAGAAAAATATTTGCACAAACGTCACATCTAATCAGAAGAACATCTGCAATATAAAACCATTAGCCATTTGGCTGTCAACAGCAATATTATCATCTATGCGTGCAATCTTTCACATTAAACGGCCGGCATAGCCATGCTCGAGGGTATTTTGCTGCCAGCTGGGGCCACTGCACGAAGACACTGATCAGCTATTCGTAGCTTGTACCAACAGTAAACCGCTTAATGAACAGCTTCTTCACTCTTGCAATGCTTTCGATGTAGACAACNTGGAGGACCATCCCAAACAAGCACCTTCAGAAGAANNAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCACAAAAATCACTTGTGGTCTTATTCTTATTATTATCCAGATAGCCAGTGTGACCGTAGCCAAGCACATGTCGTTGACATGGGNAGTAAATATACAGATGGGCTCACTTCACGACTGCGCACAATATCTGGTCACGAACCTGGTGGCATTCCT]
consensusID : consensus_14577#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 617 fasta sequence
[TTTTTTTTCTCAAAGAAAGTTAGATTTGGTAGGCTACGATAGAACAGGCAGATAGACGTACAACACGATTTACAGAAAAACCTCTCCAAAATAAGTTACACAGTGATCCTGAAAATAAGGACTCCAAAAGGACACCAAAAAGTAACCAAGTCCCTACTTCACTTATTCTTCCAATCCGATGAGCAAGACAATGAAGCCGACGGTGGCGACAGTAGGGATGGCAACGGGGCGGGTTAGGGACGGGTTGGGCTGGAACGGCCCCGCCCCCGACCCCCAAACTCTCCACCCGCCCCCGGCCCCGAGTGGACATACGGGTGGAAATCATCCCCCGCCCCGACCCCTCTCAGAGTTTCTCCTCGACGTGCGTCTCAGAGACGCTCTCAGCTTGTGTGCTGTGCCGGTGCGCCGCCGCCACGCCTCTGCGAACGTGCGCCGCCGCCGCGCCGCCGCGGGCGCTGTCCCGCCGCGCCTCTGCACCGCCGGAAGAGAGGGGAAAGGAGGGGACAGGACGGTGGAGAGGGCGACCGGAGAGGAGGGACGTCTGCCGCAGTGCCCTGCCGCCTGGGGGAGGGGCGCACGCGTACAACGCTGTTGCCGTGTTGAGCTAGCGGCTAGCC]
[-] EMBL AU078149 [TTTTTTTTCTCAAAGAAAGTTAGATTTGGTAGGCTACGATAGAACAGGCAGATAGACGTACAACACGATTTACAGAAAAACCTCTCCAAAATAAGTTACACAGTGATCCTGAAAATAAGGACTCCAAAAGGACACCAAAAAGTAACCAAGTCCCTACTTCACTTATTCTTCCAATCCGATGAGCAAGACAATGAAGCCGACGGTGGCGACAGTAGGGATGGCAACGGGGCGGGTTAGGGACGGGTTGG ]
[-] EMBL AU078148 [ GGACTCCAAAAGGACACCAAAAAGTAACCAAGTCCCTACTTCACTTATTCTTCCAATCCGATGAGCAAGACAATGAAGCCGACGGTGGCGACANTAGGGATGGCAACGGGGCGGGTTAGGGACGGGTTGGGCTGGAACGGCCCCGCCCCCGACCCCCAAACTCTCCACCCGCCCCCGGCCCCGAGTGGACATACGGGTGGAAATCATCCCCCGCCCCGACCCCTCTCAGAGTTTCTCCTCGACGTGCGTCTCAGAGACGCTCTCAGCTTGTGTGCTGTGCCGGTGCGCCGCCGCCACGCCTCTGCGAACGTGCGCCGCCGCCGCGCCGCCGCGGGCGCTGTCCCGCCGCGCCTCTGCACCGCCGGAAGAGAGGGGAAAGGAGGGGACAGGACGGTGGAGAGGGCGACCGGAGAGGAGGGACGTCTGCCGCAGTGCCCTGCCGCCTGGGGGAGGGGCGCACGCGTACAACGCTGTTGCCGTGTTGAGCTAGCGGCTAGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14577#0 --TTTTTTTTTT----------TTTTTTTTTGGCCATAATGCACGAAGATATATTCATTA 48
consensus_14577#1 --TTTTTTTTTTAGCCTATCCGCCTTTGCCTGGCCATAATGCACGAAGATATATTCATTA 58
consensus_14577#2 TTTTTTTTCTCAAAGAAAGTTAGATTTGGTAGGCTACGATAGA-ACAGGCAGATAGACGT 59
****** * *** *** * ** * ** * ** *
consensus_14577#0 GTTTCACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTT 108
consensus_14577#1 GTTTCACCAGTAATAGAAGGAACTGGAGGTACAAAATGAGTATAGTTACATAGTATAGTT 118
consensus_14577#2 ACAACACGATTTACAGAAAAACCTC----TCCAAAATA-----AGTTACACAGTGATCCT 110
*** * * * **** * ** * ****** ******* *** *
consensus_14577#0 ACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCAC 168
consensus_14577#1 ACACAAAATTACTTCTATACAGATGCAATATCTCCTCGGTTCATGGCATCTATCTATCAC 178
consensus_14577#2 GAAAATAAGGACTCCAAAAGGACACCAAAAAGTAACCAAGTCCCTAC-TTCACTTATTCT 169
* * ** *** * * * *** * * * ** * * * ***
consensus_14577#0 TCCAGTCCAGTCTGTTTTTTTTTAGATAATGACCAGTCCAGTCTGTTGAAAAGG-AAGAA 227
consensus_14577#1 TCCAGTCCAGTCTGTTTTTTTTTAGATAATAACCAGTCCAGTCTGTTGAAAAGGCAAGAA 238
consensus_14577#2 TCCAATCCGATGAGCA-------AGACAATGA--AGCCGA--CGGTGGCGACAGTAGGGA 218
**** *** * * *** *** * ** * * * ** * * * * * *
consensus_14577#0 AAATATTTG-ACAAACGTCACATCTAATCAGA--AGAACATCTGCAATATAAAACCATTA 284
consensus_14577#1 AAATATTTGCACAAACGTCACATCTAATCAGA--AGAACATCTGCAATATAAAACCATTA 296
consensus_14577#2 TGGCAACGGGGCGGGT-TAGGGACGGGTTGGGCTGGAACGGCCCCGCCCCCGACCCCCAA 277
* * * * * * * **** * * * ** *
consensus_14577#0 GC-ATTTTGCTGTAAA--GCAATATTATCATCTATGCGTG-AATCTTT-ACATTAAACGG 339
consensus_14577#1 GCCATTTGGCTGTCAACAGCAATATTATCATCTATGCGTGCAATCTTTCACATTAAACGG 356
consensus_14577#2 ACTCTCCACCCGCCCCCGGCCCCGAGTGGACATACGGGTGGAAATCAT---------CCC 328
* * * * ** * ** * *** ** * *
consensus_14577#0 CCGGCATAGC-ATGCTCGAGGGTATTTTTGCTGCAGCTGGGGCCACTGCACGAAGA-ACT 397
consensus_14577#1 CCGGCATAGCCATGCTCGAGGGTATTTTGCTGCCAGCTGGGGCCACTGCACGAAGACACT 416
consensus_14577#2 CCGCCCCGACCCCTCTCAGAG---TTTCTCCTCGACGTGCGTCT------CAGAGACGCT 379
*** * * *** * *** * ** * * * *** **
consensus_14577#0 GATCAGCTATTCGTAGCTTGTAC-AACAGTAAACCGCTTAATGAA-AGCTTCTTCACTCT 455
consensus_14577#1 GATCAGCTATTCGTAGCTTGTACCAACAGTAAACCGCTTAATGAACAGCTTCTTCACTCT 476
consensus_14577#2 C-TCAGCT---TGTGTGCTGTGC---CGGTGCGCCGCC----GCCACGCCTCTGCGAACG 428
****** ** *** * * ** **** * ** *** * *
consensus_14577#0 TGCAATGCTTTCGATGTAGAAAA--TGGAGGACCATCCCAAACCAAGCACCTTCAGAAGA 513
consensus_14577#1 TGCAATGCTTTCGATGTAGACAACNTGGAGGACCATCCCAAAC-AAGCACCTTCAGAAGA 535
consensus_14577#2 TGCGCCGCCGCCG-CGCCGCCGCGGGCGCTGTCCCGCCGCGCCTCTGCACCGCCGGAAGA 487
*** ** ** * * * * ** ** * ***** * *****
consensus_14577#0 AAA-GCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCA-AAAAATCACTTGTG 571
consensus_14577#1 ANNAGCCGAGACACACAGAGGAATGCATGTCCCTGGACCATTGCACAAAAATCACTTGTG 595
consensus_14577#2 GAGGGGAAAGGAGGGGACAGGACGGTGGAGA---GGGCGACCGGAGAGGAGGGACGTCTG 544
* ** * **** * ** * * * * * * ** * **
consensus_14577#0 GTCTTATTCTTATTATTATCCAGATAGC--ATGTGAC-GTAGC-AAGCA-ATGTCGTTGC 626
consensus_14577#1 GTCTTATTCTTATTATTATCCAGATAGCCAGTGTGACCGTAGCCAAGCACATGTCGTTGA 655
consensus_14577#2 CCGCAGTGCCC--TGCCGCCTGGGGGAGGGGCGCACGCGTA------CA-ACGCTGTTGC 595
* * * * * * *** ** * * ****
consensus_14577#0 GATGG-AAGTAA-TATA-AGATTGGCCTACTTCACGACTGCGAT--ATATCTG--TACGA 679
consensus_14577#1 CATGGGNAGTAAATATACAGATGGGCTCACTTCACGACTGCGCACAATATCTGGTCACGA 715
consensus_14577#2 CGTGTTGAGC-----TAGCGGCTAGCC--------------------------------- 617
** ** ** * **
consensus_14577#0 ACT--GTG-CATTCTCAACACCCTCTTCTTTATCAACCTCAACCCGAACCAATGACTGCT 736
consensus_14577#1 ACCTGGTGGCATTCCT-------------------------------------------- 731
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 CATAGACCTGTGCCTTCTGAAGGCTCATGTTGTCAGTAAGTGCAGCTACATAGTACCTTG 796
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 GAGTAAATCTATCCTTCTGAAGTGTAGTTACAACATTCATCATTTCTGCAGTATGTCCTC 856
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 CAGACCCAAGGACGATGAGAGACCGCATTCCAGCAGCTGAAGCTGAGAGTTTCGAAGGCA 916
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 TGTGACCGCTGTGATACATCACATATGCGAAGCGGACAAGAAGCAAAGACACAAGTACTG 976
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 GAAAGGCGCAACACACGGCCATGGAGACATCCGGCCCCATCTCTGTCAGGGCTGACGAGA 1036
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 TAAGATATCACGCAGGATTTTGCTTGCCACTAGCGCCCCCTGTCAGCCGTCCTGCGTCGT 1096
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 TGTTAGCCGCTGTGCTTGACCTCAACCGCCGTGCGCCACATTCAGCCACTACGCGGCAGC 1156
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 CCTCCGCCGCCGAGCCACCCTCACTGTAGGGCGTAGCCAGCAGGCGAGCAGGAGGCGGGA 1216
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 AGCGAACTAGCCAAGCAGATCGGCCTCCCGCGGCTCTGGGCTCCTCGCCGGCTAGCGAAG 1276
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 CAGATCGGCGGCCGGCCCCTCGCCAGTCGCGGGATCGCAGCTCGCGCACTCTCCGTCGCC 1336
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 GCCGTACCGCCCGTCGCCCGCCGCAATCGCACGCTCACACCCGCAGCCAGCCGTCCCCAC 1396
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 TCCCGTGTCCTCTCAGAGTTTCTCTCGACGTGCGTCTCAGAGACGCTCTCAGCTTGTGTG 1456
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 CTGTGCCGGTGCGCCGCCGCCACGCCTCTGCGACGCTGCGCCGCCGCCGCGCCGCCGCGG 1516
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 GCGCTGTCCCGCCGCGCCTCTGCACCGCCGGAAGAGAGGGGAAAGGAGGGGACAGGACGG 1576
consensus_14577#1 ------------------------------------------------------------
consensus_14577#2 ------------------------------------------------------------
consensus_14577#0 TGGAGAGGGCG 1587
consensus_14577#1 -----------
consensus_14577#2 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||