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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14578#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1225 fasta sequence
[AGGGGAAAGAGTTCCCAC-TTCCCCCACCAAACTCCGCTCGGATCACCCACCGGCGGCGAGGCTGCGGAGATGGCCGGCGGCGAGGACGAAGGGTGGAGGAGGAGCGGCATCGAGGTGAGCGCACTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGCTTGTGTGCAA-CGGTGACCTTTCCTACTT-AGGTGGTTCATGGAGTCGGGCTAT-CGGTTC-AGCTGGTGACGTTCCTC-TGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGTTGAT-GGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCT-CCTTGACTTCTTTAAGGAAGAGTGTGAACAGAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACAT-CCAAGAAGGTG-AATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGC-TAAAGAGTGCC-AAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACCAAACT-CCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACAATTTGTTTCTGTTCTGTTTCTCATCCCTTTCTACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGATGAGCAGTGAGTACCCATCAAGTTCATTTCTGTACTTCTTTCTGATAATCTAATACTACATGAATTCAGTCCCTGTCATTCTTTAGAAAGGCTTGATGTACATTAAGAAATGGCCCCATTTATCACGAGAAAGTAATGTGTAC]
[+] EMBL CB096918 [AGGGGAAAGAGTTCCCAC TTCCCCCACCAATCTCCGCTCGGAT NCCCACCGGCGGCGAGGCTGCGGAGATGGCCGTCGGCGAGGACGAAGGGTGGAGGAGGAGCGGCATCGAGGTGAGCGCACTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCTAACGGATCAGGCAAGACCACTCTCTTGAAGAATCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGCTTGTGTGCAA CGGTGACCTTTCCTACTT AGGTGGTTCATGGAGTCGGGCTAT CGGTTC AGCTGGTGACGTTCCTC TGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGTTGAT GGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCTCCCTTGACTTCTTTAAGGAAGAGTGTGAACAGAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATNCCAAGAAGGNGAAATTGAGAAAATCANCAAAATACTCTGACGTTGAGGANCTTAAAGAGTGCC CAAAA ]
[+] EMBL AK099203 [ AGAGTTCCCAC TTCCCCCACCAAACTCCGCTCGGATCACCCACCGGCGGCGAGGCTGCGGAGATGGCCGGCGGCGAGGACGAAGGGTGGAGGAGGAGCGGCATCGAGGTGAGCGCACTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGCTTGTGTGCAA CGGTGACCTTTCCTACTT AGGTGGTTCATGGAGTCGGGCTAT CGGTTC AGCTGGTGACGTTCCTC TGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGTTGAT GGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCT CCTTGACTTCTTTAAGGAAGAGTGTGAACAGAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACAT CCAAGAAGGTG AATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGC TAAAGAGTGCC AAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGCGACCAAACT CCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACAATTTGTTTCTGTTCTGTTTCTCATCCCTTTCTACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGATGAGCAGTGAGTACCCATCAAGTTCATTTCTGTACTTCTTTCTGATAATCTAATACTACATGA ]
[+] EMBL AK059363 [ GAGTTCCCAC TTCCCCCACCAAACTCCGCTCGGATCACCCACCGGCGGCGAGGCTGCGGAGATGGCCGGCGGCGAGGACGAAGGGTGGAGGAGGAGCGGCATCGAGGTGAGCGCACTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGCTTGTGTGCAA CGGTGACCTTTCCTACTT AGGTGGTTCATGGAGTCGGGCTAT CGGTTC AGCTGGTGACGTTCCTC TGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGTTGAT GGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCT CCTTGACTTCTTTAAGGAAGAGTGTGAACAGAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACAT CCAAGAAGGTG AATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGC TAAAGAGTGCC AAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACCAAACT CCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTGCACCTATTCTGGTGCTAATTAATCATACTTCCACAATTTGTTTCTGTTCTGTTTCTCATCCCTTTCTACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGATGAGCAGTGAGTACCCATCAAGTTCATTTCTGTACTTCTTTCTGATAATCTAATACTACATGAATTCAGTCCCTGTCATTCTTTAGAAAGGCTTGATGTACATTAAGAAATGGCCCCATTTATCACGAGAAAGTAATGTGTAC]
[+] EMBL CF318311 [ TCCCACTTTCCCCCACCAAACTCCGCTCGGATCACCCACCGGCGGCGAGGCTGCGGAGATGGCCGGCGGCGAGGACGAAGGGTGGAGGAGGAGCGGCATCGAGGTGAGCGCACTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGCTTGTGTGCAA CGGTGACCTTTCCTACTT AGGTGGTTCGTGGAGTCGGGCTAT CGGTTC AGCTGGTGACGTTCCTC TGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGTTGATGGGGGTTGATCCTGCTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAAT ]
[+] EMBL OSR3309A [ AC TTCCCCCACCAAACTCCGCTCGGATCACCCACCGGCGGCGAGGCTGCGGAGATGGCCGGCGGCGAGGACGAAGGGTGGAGGAGGAGCGGCATCGAGGTGAGCGCACTGCAGTTCGACTACNACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGCTTGTGTTCAA CGGTGACCTTTCCTACTT AGGTGGTTCATGGAGTCG ]
[+] EMBL C28678 [ TCCCCCACCAAACTCCGCTCGGNTCACCCACCGGCGGCGAGGCTGCGGAGATGGCCGGCGGCGAGGACGAAGGGTGGAGGAGGAGCGGCATCGAGGTGAGCGCACTGCAGTTCGACTACAACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGTTTGTGTTCAANGGGTGACCTTTCCTACTTAAGGTGGTTCATGGAGTCGGGCTATCCGGTTCAACCTGGTGACGTTCCTCTTGAAAGG ]
[+] EMBL CA766802 [ aagGGGTGGAGGAGGAGCGGCATCGAGGTGAGCGCACTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATCGCCCCCGGCTCACGATGCCTCCTCATCGGCGCTAACGGATCAGGCAAGACCACTCTCTTGAAGATTCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGTTCTGCTTTTCATGACACACAGCTTGTGTGCAA CGGTGACCTTTCCTACTT AGGTGGTTCATGGAGTCGGGCTAT CGGTTC AGCTGGTGACGTTCCTC TGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGTTGAT GGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCT CCTTGACTTCTTTAAGGAAGAGTGTGAACAGAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACAT CCAAGAAGGTG AATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGC TAAAGAGTGCCAAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACCAAACTNCCCTAANAAAGAACATCCCCGTCCTGAaa ]
[+] EMBL AU032043 [ tnAGACCCAGCCCAGGCGCTCCNCTCCATTTGNTGCTTCACCGTTCCGATCTTCACGCCACNTGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACAATTTGTTTCTGTTCTGTTTCTCATCCCTTTCTACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGATGAGCAGTGAGTACCCATCAAGTTCATTTCTGTACTTCTTTCNGNTAATCTAATACTACATGAATTCAGTCCCTGTCAaaaaaaaa ]
consensusID : consensus_14578#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 715 fasta sequence
[TTCGGCACAAGACCACTTTATGGGGTTGATCCTCTTAGTCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAGAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGCTAAAGAGTGCCAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACC-AAACTCCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACA-ATTTGTTTCTGTTCTGTTTCTCATCCCTTTCTACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA]
[-] EMBL BU673203 [TTCGGCACAAGACCACTTTATGGGGTTGATCCTCTTAGTCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTACAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAGAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGCTAAAGAGTGCCAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACC AAACTCCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCTACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACA ATTTGTTTCTGTTCTGTTTCTCGTCCCTTTCTACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCC ]
[-] EMBL CF318312 [ TTGCTTGATGAAATCACCGTTGATCTTGATGTTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAGAGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGCTAAAGAGTGCCAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACC AAACTCCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACA ATTTGTTTCTGTTCTGTTTCTCATCCCTTTCTACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGA AAAAAAAA ]
[+] EMBL OSS13187A [ angnagtAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGCTAAAGAGTGCCAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACC AAACTCCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGNCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGNTAATTAATCATACTTCCACA ATTTGTTTCTGGTCTGGTTCTCAT CCTTTCTACGGCATTGTACCTAATATATAAATAAAG GGACTTAC ]
[+] EMBL AU032669 [ ATGCCACTCATNTATTTGATGGATTGGAATCATGGGCTACTGACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAGCAAAATACTCTGACGTTGAGGAGCTAAAGAGTGCCAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACC AAACTCCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACA ATTTGTTTCTGTTCTGTTTCTCATCCCTTTCTACGGCATTGTACCNAATATATAAATAAAGCGAACTTACCCTTGTGCNGA TGAAAAAAAAAAAAA ]
[+] EMBL BM418994 [ ccgGATCTGAGACCNNAACTCCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCACTCCTCTCCATTTGATGCTTCACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACACATTTGTTTCTGTTCTGTTTCTCGTCCCTTTCTAC GCCTTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGA AAAAAAAAA ]
[+] EMBL CF312980 [ CTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCCACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACA ATTTGTTTCTGTTCTGTTTCTCATCCCTTTCTACGGCATTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAA]
consensusID : consensus_14578#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[GGTTGTGACTAGAGATGGATTCCTCCCTNTGACGTTCTCTTATAGGAAGAAGTGTGAACCAGAGAGAGCAATACCATATNTGTGCTATGGCCCACCTGCATATATTTTGATGGGATTGGAATGCCATGGGGGCTGACCTGGACCTATGTNGCATTGACATGCGCACTAGGAAATGGTGGATATTGTGCGATGATAAATATGCACGCCATATAAATGATCTGCTGGACCGTGTGGAGGAGCTGATANAGAGTGGCCATAAAACTGTGGGCTGGGTGCTAGGTTGTGCGAGTGCATGGGGCTGGGCGGATGCTGGAGACCAAACTGCCCTGAAGAAAAGGAACAATGCCCCGTGCCTGGAGGACCCTATGCCCAGGCATCTGCCTGCTGCCATGTTGGGATGGCTTGCAACCGTTGCCGATGCTGTGCACGCCACATGGCCTGACCTGACCGTTGATGGATTGTGTCCCACCTGCTGACACCTGATGTGCTGGTGCTGAATGTGAATGCATGACTGTGCCACAATTTGGTTTGCTGTTGCTGGTGTTGCTGCGTGCCCTGTGTGCTGACGGGCATGTGGTGACCTGAATATATAAATAAAGCGAACTTACCCTTGTGCCGATGAGCAGTGAGTACCCATCAAGTTCATTGCNGTACTTCTTTCTGATAATCTAATACTACANGAATTCAAAAAA]
[+] EMBL BQ909238 [GGTTGTGACTAGAGATGGATTCCTCCCTNTGACGTTCTCTTATAGGAAGAAGTGTGAACCAGAGAGAGCAATACCATATNTGTGCTATGGCCCACCTGCATATATTTTGATGGGATTGGAATGCCATGGGGGCTGACCTGGACCTATGTNGCATTGACATGCGCACTAGGAAATGGTGGATATTGTGCGATGATAAATATGCACGCCATATAAATGATCTGCTGGACCGTGTGGAGGAGCTGATANAGAGTGGCCATAAAACTGTGGGCTGGGTGCTAGGTTGTGCGAGTGCATGGGGCTGGGCGGATGCTGGAGACCAAACTGCCCTGAAGAAAAGGAACAATGCCCCGTGCCTGGAGGACCCTATGCCCAGGCATCTGCCTGCTGCCATGTTGGGATGGCTTGCAACCGTTGCCGATGCTGTGCACGCCACATGGCCTGACCTGACCGTTGATGGATTGTGTCCCACCTGCTGACACCTGATGTGCTGGTGCTGAATGTGAATGCATGACTGTGCCACAATTTGGTTTGCTGTTGCTGGTGTTGCTGCGTGCCCTGTGTGCTGACGGGCATGTGGTGACCTGAATATATAAATAAAGCGAACTTACCCTTGTGCCGATGAGCAGTGAGTACCCATCAAGTTCATTGCNGTACTTCTTTCTGATAATCTAATACTACANGAATTCAAAAAA]
consensusID : consensus_14578#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence
[TGCACCGTGTGCCGATGCTGTGCACGCCAACCTGGCCTGACTGACCGTGGGATGGATGTGGTGTGCCCACCTGCTGACAACCTGATGTGCTGGGTGGCTGAATTGAATGCATGACTTGCCCACCATGTGTGGTGTGTGCTGGTGTGCTGGTGTGTGCTGCGTCCCTTTTTACGGCCTTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGAAAAAAAAAA]
[+] EMBL BM418807 [TGCACCGTGTGCCGATGCTGTGCACGCCAACCTGGCCTGACTGACCGTGGGATGGATGTGGTGTGCCCACCTGCTGACAACCTGATGTGCTGGGTGGCTGAATTGAATGCATGACTTGCCCACCATGTGTGGTGTGTGCTGGTGTGCTGGTGTGTGCTGCGTCCCTTTTTACGGCCTTGTACCTAATATATAAATAAAGCGAACTTACCCTTGTGCCGAAAAAAAAAA]
consensusID : consensus_14578#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence
[AATTTGTTTCTGTTCTGTTTCTCGTCCCTTTCTACGGCTTGTACCTGAATATATATATAAAGCGAACTTACCCTGTGCCGATGACAGTGAGTACCCATCAAGTTCATTGCTGTACTGTCTCTTCTGATAATCTAATACCTACCATGAACTTCAGG]
[-] EMBL BM422308 [AATTTGTTTCTGTTCTGTTTCTCGTCCCTTTCTACGGCTTGTACCTGAATATATATATAAAGCGAACTTACCCTGTGCCGATGACAGTGAGTACCCATCAAGTTCATTGCTGTACTGTCTCTTCTGATAATCTAATACCTACCATGAACTTCAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14578#0 AGGGGAAAGAGTTCCCACTTCCCCCACCAAACTCCGCTCGGATCACCCACCGGCGGCGAG 60
consensus_14578#1 ------------------------------------------------------------
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ------------------------------------------------------------
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 GCTGCGGAGATGGCCGGCGGCGAGGACGAAGGGTGGAGGAGGAGCGGCATCGAGGTGAGC 120
consensus_14578#1 ------------------------------------------------------------
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ------------------------------------------------------------
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 GCACTGCAGTTCGACTACGACGGGCAGCCGCCGCTCTTCGCGCGGTTCAATCTCCGCATC 180
consensus_14578#1 ------------------------------------------------------------
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ------------------------------------------------------------
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 GCCCCCGGCTCACGATGCCTCCTCATCGGCGCGAACGGATCAGGCAAGACCACTCTCTTG 240
consensus_14578#1 ------------------------------------------------------------
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ------------------------------------------------------------
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 AAGATTCTTGCGGGGAAACATATGGTTGGAGGAAGAGATGTTGTCCGTGTTCTTAATGGT 300
consensus_14578#1 ------------------------------------------------------------
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ------------------------------------------------------------
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 TCTGCTTTTCATGACACACAGCTTGTGTGCAACGGTGACCTTTCCTACTTAGGTGGTTCA 360
consensus_14578#1 ------------------------------------------------------------
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ------------------------------------------------------------
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 TGGAGTCGGGCTATCGGTTCAGCTGGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAA 420
consensus_14578#1 -------------------------------------------------------TTCGG 5
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ------------------------------------------------------------
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 CACATGATTTTTGGAGTTGATGGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTA 480
consensus_14578#1 CACAAGACC-----ACTTTATGGGGTTGATCCTCTTAGTCGAGAGAAGCTTGTTGATCTA 60
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ----------------------------------GGTTGTGACTAGAGATGGATTCCTCC 26
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 CTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTA 540
consensus_14578#1 CTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAGGGTA 120
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 CTNTGACGTTCTCTTATAGGAAGAAGTGTGAACCAGAGAGAGCAATACCATATNTGTGCT 86
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 CAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTT 600
consensus_14578#1 CAAATCTGCATGGGTCTTCTTCATCCATACAAGGTACTCTTGCTTGATGAAATCACCGTT 180
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 ATGGCCCACCTGCATATATTTTGATGGGATTGGAATGCCATGGGGGCTGACCTGGACCTA 146
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 GATCTTGATGTTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAG 660
consensus_14578#1 GATCTTGATGTTGTGACTAGAATGGATCTCCTTGACTTCTTTAAGGAAGAGTGTGAACAG 240
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 TGTNGCATTGACATGCGCACTAGGAAATGGTGGATATTGTGCGATGATAAATATGCACGC 206
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 AGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACT 720
consensus_14578#1 AGAGAAGCAACCATTGTCTATGCCACTCATATATTTGATGGATTGGAATCATGGGCTACT 300
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 CATATAAATGATCTGCTGGACCGTGTGGAGGAGCTGATANAGAGTGGCCATAAAACTGTG 266
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 GACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAGCAAAATACTCTGACGTTGAG 780
consensus_14578#1 GACATTGCATACATCCAAGAAGGTGAATTGAGAAAATCAGCAAAATACTCTGACGTTGAG 360
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 GGCTGGGTGCTAGGTTGTGCGAGTGCATGGGGCTGGGCGGATGCTGGAGACCAAACTGCC 326
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 GAGCTAAAGAGTGCCAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACC 840
consensus_14578#1 GAGCTAAAGAGTGCCAAAAACTTGCTGTCAGTTGTCGAGTCATGGCTGCGATCTGAGACC 420
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 CTGAAGAAAAGGAACAATGCCCCGTGCCTGGAGGACCCTATGCCCAGGCATCTGCCTGCT 386
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 AAACTCCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTT 900
consensus_14578#1 AAACTCCCTAAGAAAGAACATCCCCGTCCTGAGACCCAGCCCAGGCGCTCCTCTCCATTT 480
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 GCCATGTTGGGATGGCTTGCAACCGTTGCCGATGCTGTGCACGCCA-CATGGCCTGACCT 445
consensus_14578#3 -----------------TGCACCGTGTGCCGATGCTGTGCACGCCAACCTGGCCTGAC-T 42
consensus_14578#0 GATGCTTC-ACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCC 959
consensus_14578#1 GATGCTTC-ACCGTTCCGATCTTCACGCCACATGGCCTACTACCGTTGATGATTGTTCCC 539
consensus_14578#4 ------------------------------------------------------------
consensus_14578#2 GACCGTTG-ATGGATT--GTGT-CCCACCTGCTGACA-CCTGATGT-GCTGGT--GCTGA 497
consensus_14578#3 GACCGTGGGATGGATGTGGTGTGCCCACCTGCTGACAACCTGATGT-GCTGGGTGGCTGA 101
consensus_14578#0 ACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACAATTTGTTTCTGTTCTGTT 1019
consensus_14578#1 ACCTCTACACCTATTCTGGTGCTAATTAATCATACTTCCACAATTTGTTTCTGTTCTGTT 599
consensus_14578#4 -----------------------------------------AATTTGTTTCTGTTCTGTT 19
consensus_14578#2 ATGTGAATGCATGACTGTGCCACAATTTGGTTTGCTGT--TGCTGGTGTTGCTGCGTGCC 555
consensus_14578#3 AT-TGAATGCATGACTTGCCCACCATGTG---TGGTGTG-TGCTGGTGTGCTGGTGTGTG 156
* * **
consensus_14578#0 TCTCATCCCTTTCTACG-GCATTGTACCT-AATATATAAATAAAGCGAACTTACCCTTGT 1077
consensus_14578#1 TCTCATCCCTTTCTACG-GCATTGTACCT-AATATATAAATAAAGCGAACTTACCCTTGT 657
consensus_14578#4 TCTCGTCCCTTTCTACG-GC-TTGTACCTGAATATATATATAAAGCGAACTTACCCT-GT 76
consensus_14578#2 CTGTGTGCTGACGGGCATGTGGTGACCTG-AATATATAAATAAAGCGAACTTACCCTTGT 614
consensus_14578#3 CTGCGTCCCTTTTTACG-GCCTTGTACCT-AATATATAAATAAAGCGAACTTACCCTTGT 214
* * * * ** * ******** ****************** **
consensus_14578#0 GCCGATGAGCAGTGAGTACCCATCAAGTTCATT-TCTGTACTTCTTTCTGATAATCTAAT 1136
consensus_14578#1 GCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-AAAA-----------AAAAAAAAAAA 705
consensus_14578#4 GCCGATGACAGTGAGTACCCATCAAGTTCATTGCTGTACTGTCTCTTCTGATAATCTAAT 136
consensus_14578#2 GCCGATGAGCAGTGAGTACCCATCAAGTTCATTGCNGTACTTCTTTCTGATAATCTAATA 674
consensus_14578#3 GCCGAAAAAAAAAA---------------------------------------------- 228
***** *
consensus_14578#0 AC--TACATGAATTCAGTCCCTGTCATTCTTTAGAAAGGCTTGATGTACATTAAGAAATG 1194
consensus_14578#1 AA--AACAAAAA------------------------------------------------ 715
consensus_14578#4 ACCTACCATGAACTTCAGG----------------------------------------- 155
consensus_14578#2 CTACANGAATTCAAAAAA------------------------------------------ 692
consensus_14578#3 ------------------------------------------------------------
consensus_14578#0 GCCCCATTTATCACGAGAAAGTAATGTGTAC 1225
consensus_14578#1 -------------------------------
consensus_14578#4 -------------------------------
consensus_14578#2 -------------------------------
consensus_14578#3 -------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||