These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 2008 fasta sequence [CCGTCTCCGGGATTTTAATTTCTTGGCACCTCGCCTCAGCATATTCCATGTCCCCTCTCCATCCGCCCCACGCGCCCACTTTGACCGACCCATCGATCGATCACGATATTTAGTAGTAGTAGTAGTATTACAAATCCAGCAAGCGATCCCAATATCCCATTCCCAAAACCCCAATCCATCCTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAGAGGAGGAGGAGGAGGTGCCAGCCATGGTGGACCGGATCGGCGCCGCGTGGTGGTGCGCGTGCGCCGTGGGGATGCTGGTGGTGGGGGCGTGCCTCGCCGGGGAGACCAGCGAGTACCGGCGCCAGCTCGGCTCCGCCGTCGACATGCCGCTCGACGCCGACGTCTTCCGCGCCCCGCCCGGCCGCAATGCGCCCCAGCAGGTTCATATCACACAAGGAAATCATGATGGCACTGCCATGATAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGGAGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACACCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGAATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA-CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCAAAAAAAAAAAAAAGA] [+] EMBL AK071643 [CCGTCTCCGGGATTTTAATTTCTTGGCACCTCGCCTCAGCATATTCCATGTCCCCTCTCCATCCGCCCCACGCGCCCACTTTGACCGACCCATCGATCGATCACGATATTTAGTAGTAGTAGTAGTATTACAAATCCAGCAAGCGATCCCAATATCCCATTCCCAAAACCCCAATCCATCCTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAGAGGAGGAGGAGGAGGTGCCAGCCATGGTGGACCGGATCGGCGCCGCGTGGTGGTGCGCGTGCGCCGTGGGGATGCTGGTGGTGGGGGCGTGCCTCGCCGGGGAGACCAGCGAGTACCGGCGCCAGCTCGGCTCCGCCGTCGACATGCCGCTCGACGCCGACGTCTTCCGCGCCCCGCCCGGCCGCAATGCGCCCCAGCAGGTTCATATCACACAAGGAAATCATGATGGCACTGCCATGATAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGGAGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACACCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGAATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGGAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACT ] [+] EMBL AK059025 [ AAGGAAATCATGATGGCACTGCCATGATAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGGAGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACACCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGAATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTG ] [+] EMBL CB680829 [ TAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGGAGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACACCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACTATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTGGCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGAATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGA ] [+] EMBL CF196242 [ TTTCGTTGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACNAAGTTGACCTNNNGTTTGCAGGACATGT ] [+] EMBL CA882801 [ TGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATAC ] [+] EMBL CA923296 [ TGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACAAGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCTATTCAAGCCATAC ] [+] EMBL CA882881 [ TGGGGATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACAAGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCTATTCAAGCCATAC ] [+] EMBL CF322748 [ GGATACATGGGCAAGATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGATAGATTTTGCCCCATAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTANCATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCC ] [+] EMBL AK060314 [ ATAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACCCCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCATCTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACAAGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGT ] [-] EMBL CB680830 [ AAGTATACTCCTCAGTACAAGTGGC TGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGCTATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTA CATGGAAGGTGAAAGCATGAGAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTTCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCAAAAAAAAAAAAAAGA] [-] EMBL BI306474 [ GGACATGTTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCCAGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAAACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGGAGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGTGGCACCGCAACCAGGACGGCAACGCTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGCCGACGGATGAATCTTTGGACGACTCCCAGTGATCTGAGTCGTTCGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGCTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCCTCCGGTGCAGGCGTCGTGATCTAGGTGGTTCTTTCTCCGCTCCAGCTCCCTCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGG ] consensusID : consensus_14583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [AAACTTGAACGGACGACCGACAGACCTGGACACTCGGACCTTCAGGGACGTCGAGACTTACGGGACAACGACCATCCTGGACAGTCAAGAAACAGGACGACAACGACGTAACTACAACGGTGGAAACCGCAACCAGGACGGCAACGACTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGACCGACGGATGAATCTTTGGACGACTACCCAGTGATCTGAGTCGTTACGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGNCCTCCCGGTTCAGGCCGTTCGTGATCTAGGTGGTTACTTTCTCCGCTTCCAGCTCCCTCCTGGGCCGTGTGCTGCTTGTGTATAAAAAANCCCCAGCTCACGTGCAGCGAAAGGAAAAAAAAGCTGAAAAATTGCCAGTTGATACTGGATAGGCTGGTGTACTTTCGTACTCCTTTAAATGTTGAATAACACATTGGTTCTGGGCCCTTGCAACTNGCATTGGACAAAAAAAAAAAA] [+] EMBL BQ172736 [AAACTTGAACGGACGACCGACAGACCTGGACACTCGGACCTTCAGGGACGTCGAGACTTACGGGACAACGACCATCCTGGACAGTCAAGAAACAGGACGACAACGACGTAACTACAACGGTGGAAACCGCAACCAGGACGGCAACGACTGTGGCGGCTGACTCCATGTGGTTCACCAACAGATACTGGCAGACCGACGGATGAATCTTTGGACGACTACCCAGTGATCTGAGTCGTTACGTACATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTTGTGTTGTGGTTCTTCTACGTGAATAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGNCCTCCCGGTTCAGGCCGTTCGTGATCTAGGTGGTTACTTTCTCCGCTTCCAGCTCCCTCCTGGGCCGTGTGCTGCTTGTGTATAAAAAANCCCCAGCTCACGTGCAGCGAAAGGAAAAAAAAGCTGAAAAATTGCCAGTTGATACTGGATAGGCTGGTGTACTTTCGTACTCCTTTAAATGTTGAATAACACATTGGTTCTGGGCCCTTGCAACTNGCATTGGACAAAAAAAAAAAA] consensusID : consensus_14583#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [ATCCTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAAAAGGAGGAGGAGGAGGGTGCCAGCCATTGGTGGACCCGANTCGGCCCCCCCTTGGTGGTTCCCCTTCCCCCCTGGGGATTCTTGTTGGTGGGGGCTNNCCTTTCCCGGGGGACCAANGAGTTCCGGGGCCAGTTTGGGTTCCCCCNNNAAATTGCCGTTTNAACCCNAATTTTTTCGGGCCCCCCCCGGCCCAAATGGCCCCCCCNGGGTTTTTTTTCC] [+] EMBL AU181279 [ATCCTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAAAAGGAGGAGGAGGAGGGTGCCAGCCATTGGTGGACCCGANTCGGCCCCCCCTTGGTGGTTCCCCTTCCCCCCTGGGGATTCTTGTTGGTGGGGGCTNNCCTTTCCCGGGGGACCAANGAGTTCCGGGGCCAGTTTGGGTTCCCCCNNNAAATTGCCGTTTNAACCCNAATTTTTTCGGGCCCCCCCCGGCCCAAATGGCCCCCCCNGGGTTTTTTTTCC] consensusID : consensus_14583#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 235 fasta sequence [GGGTGGTT-CTTTCTCCGCT-CCA-GCT-CCCT-CGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG] [-] EMBL CB966298 [ GGTGGTT CTTTCTCCGCT CCA GCT CCCT CGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG] [-] EMBL BU673779 [ GGTGGTT CTTTCTCCGCT CCA GCT CCCT CGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG] [-] EMBL BU673043 [ GGTGGTT CTTTCTCCGCT CCA GCT CCCT CGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG] [-] EMBL CB965848 [gctgcGTTGCTCTCCCCGCTCCCACGCTGCCCTGCGTGGCCGTGTGCTGCTTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGCGAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACATTGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTGGCAAGCTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 CCGTCTCCGGGATTTTAATTTCTTGGCACCTCGCCTCAGCATATTCCATGTCCCCTCTCC 60 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 ATCCGCCCCACGCGCCCACTTTGACCGACCCATCGATCGATCACGATATTTAGTAGTAGT 120 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 AGTAGTATTACAAATCCAGCAAGCGATCCCAATATCCCATTCCCAAAACCCCAATCCATC 180 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 CTCGGAGCACGCCACCTTCACGAGGAAGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAG 240 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 AGGAGGAGGAGGAGGTGCCAGCCATGGTGGACCGGATCGGCGCCGCGTGGTGGTGCGCGT 300 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 GCGCCGTGGGGATGCTGGTGGTGGGGGCGTGCCTCGCCGGGGAGACCAGCGAGTACCGGC 360 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 GCCAGCTCGGCTCCGCCGTCGACATGCCGCTCGACGCCGACGTCTTCCGCGCCCCGCCCG 420 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 GCCGCAATGCGCCCCAGCAGGTTCATATCACACAAGGAAATCATGATGGCACTGCCATGA 480 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 TAATCTCATGGGTGACAACAATTGAGCCAGGCTCAAGCACTGTGCTCTATGGGACTTCGG 540 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 AGGATAATCTTAATTTCTCTGCAGATGGAAAACACACTCAGTATACGTTCTACAACTACA 600 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 CCTCAGGATACATTCATCACTGTACAATAAAAAAGTTGGAGTTTGACACAAAATACTACT 660 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 ATGCTGTTGGGATTGGACAAACCGTGAGGAAGTTTTGGTTCAGAACCCCTCCAAAAAGTG 720 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 GCCCAGATGTTCCATATACATTTGGTCTCATAGGTGATCTTGGTCAGAGCTACGACTCGA 780 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 ATATTACGCTGGCCCATTATGAGTCCAATTCAAAGGCGCAAGCAGTACTTTTCGTTGGGG 840 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 ATCTGTGTTATGCAGATAACTACCCATACCATGACAATGTGAGGTGGGATACATGGGCAA 900 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 GATTTGTAGAGAGGAATGTTGCCTACCAGCCTTGGATCTGGACAGCTGGAAATCATGAGA 960 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 TAGATTTTGCCCCAGAACTTGGTGAAACGAAGCCATTCAAGCCATACAGCTATAGGTACC 1020 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 CCACACCTTATAAGGCTTCCGGTAGCACGGCACCTTTCTGGTATTCTGTCAAAAGAGCAT 1080 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 CTGCTTATATTATTGTCTTGGCATCATATTCATCATATGGAAAGTATACTCCTCAGTACA 1140 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 AGTGGCTTGAAGCTGAGTTTCCCAAGGTTAACAGGAGTGAAACGCCATGGTTGATAGTGC 1200 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 TATTGCATGCTCCGTGGTACAACAGCTATAACTATCACTACATGGAAGGTGAAAGCATGA 1260 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 GAGTTATGTATGAGCCGTGGTTCGTCAAGTACAAAGTTGACCTCGTGTTTGCAGGACATG 1320 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ------------------------------------------------------------ consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 TTCATGCCTATGAACGGACACACAGGATATCAAATGTCGCGTACAACATTGTGAATGGCC 1380 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ----------------------------------------------------------AA 2 consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 AGTGCACTCCAGTCCATGATCAGTCTGCTCCAGTCTACATAACCATCGGAGATGGAGGAA 1440 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 ACTTGAACGGACGACCGACAGACCTGGACACTCGGACCTTCAGGGACGTCGAGACTTACG 62 consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 ACCAGGAAGGACTGGCCACCAACATGACGGCGCCGCAGCCTGGCTACTCGGCCTTCAGGG 1500 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 GGACAACGACCATCCTGGACAGTCAAGAAACAGGACGACAACGACGTAACTACAACGGTG 122 consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 AGTCGAGCTTCGGGCACGCCATCCTGGACATCAAGAACAGGACGCACGCGTACTACACGT 1560 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 GAAACCGCAACCAGGACGGCAACGACTGTGGCGGCTGACTCCATGTGGTTCACCAACAGA 182 consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 GGCACCGCAACCAGGACGGCAACG-CTGTGGCGGCTGACTCCATGTGGTTCACCAACAGA 1619 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 TACTGGCAGACCGACGGATGAATCTTTGGACGACTACCCAGTGATCTGAGTCGTTACGTA 242 consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 TACTGGCAG-CCGACGGATGAATCTTTGGACGACT-CCCAGTGATCTGAGTCGTT-CGTA 1676 consensus_14583#2 ------------------------------------------------------------ consensus_14583#1 CATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTTTGTGTTGTGGTTCTTCTACGTGAA 302 consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 CATGGTTTACTCACACCTGCTCCTCCTCCCTAGTTT-GTGTTGTGGTTCTTCTACGTGAA 1735 consensus_14583#2 -------------------------------ATCCTCGGAGCACGCCACCTTCACGAGGA 29 consensus_14583#1 TAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGNCCTCCCGGTTCAGGC 362 consensus_14583#3 ------------------------------------------------------------ consensus_14583#0 TAAGCACTGGCTCGATTTGAACACACAGGACGGACTCACGGACGCC--TCCGGTTCAGGC 1793 consensus_14583#2 AGAGAGAATCGAGGAAGCAGAGCGCTCGGACCAAAAGGAGGAGGAG--GAGGGTGCCAGC 87 consensus_14583#1 CGTTCGTGATCTAGGTGGTTACTTTCTCCGCTTCCAGCTCCCTCCTGGGCCGTGTGCTGC 422 consensus_14583#3 ------------GGGTGGTT-CTTTCTCCGCT-CCAGCTCCCTCGTGG-CCGTGTGCTGC 45 consensus_14583#0 G--TCGTGATCTAGGTGGTT-CTTTCTCCGCT-CCAGCTCCCTCGTGG-CCGTGTGCTGC 1848 consensus_14583#2 CATTGGTGG---ACCCGANTCGGCCCCCCCTTGGTGGTTCCCCTTCCCCCCTGGGGATTC 144 * * * ** * * **** ** * * * * consensus_14583#1 TTGTGTATAAAAAANCCCCAGCTCACGTGCAGCGAAAGGAAAAAAAAGCTGAAAAATTGC 482 consensus_14583#3 TTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGC 105 consensus_14583#0 TTGTGTATAGAAGAAGCGCAGCTCACGTGCAGCGAGAGGAAAAGAAAGCTGAGAAATTGC 1908 consensus_14583#2 TTGT---TGGTGGGGGCTNNCCTTTC---CCGGGGGACCAANGAGTTCCGGGGCCAGTTT 198 **** * * ** * * * * * ** * * * * consensus_14583#1 CAGTTGATACTGGATAGGCTGGTGTACTTTCGTACTCCTTTAAATGTTGAATAA-CACAT 541 consensus_14583#3 GAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACAT 165 consensus_14583#0 GAGTTGATACTTGATAGGCTTGTGTACGTTCGTACTCGTCTAGATGTTGAATAAACACAT 1968 consensus_14583#2 GGGTTCCCCCNNNAAATTGCCGTTTNAACCCNAATTTTTTCGGGCCCCCCCCGGCCCAAA 258 *** * * * ** * * * * * * * consensus_14583#1 TGGTTCTGGGCCCTTGCAACTNGCATTGGACAAAAAAAAAAAA----------------- 584 consensus_14583#3 TGGTTTCGTGGCGTTGCGACTTGCATTTGACAATCCGAGTGGGAGTAACATGGGCTTCTG 225 consensus_14583#0 TGGTTTCGTGGCGTTGCGACTTGCAAAAAAAAAAAAAAGA-------------------- 2008 consensus_14583#2 TGGCCCCCCCNGGGTTTTTTTTCC------------------------------------ 282 *** * * * consensus_14583#1 ---------- consensus_14583#3 GCAAGCTGTG 235 consensus_14583#0 ---------- consensus_14583#2 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||