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Oryza sativa
cluster # 14597 cluster # 14597       Sequences # 17       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14597#0 length = 843 sequences # 7  
consensus_14597#1 length = 712 sequences # 7  
consensus_14597#2 length = 396 sequences # 1  
consensus_14597#3 length = 388 sequences # 1  
consensus_14597#4 length = 158 sequences # 1  

consensusID : consensus_14597#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 843
fasta sequence
                              [CAAAACGCCACTACAANTACTGTTCTTTTTTGTTCCTAGCAGCCTTGACAACAAGAAACACGCCGCTCAGTTTTGTACTTTAGAGTCTAAATTTTCAACAAAAANAAAAAAACAGTTCATGTGAATTTGGCGTGGAGTCCATGAGACCATGACCCATTCTACCGATTCATTTTCTTCTTTTGAGTGAATTTGTTCCCAAATCCCAACCCACCCCACCTCCAAATCTCCAATCCCCTCGCTCCCTAAATCACGCTCGTCAACCGCGTCGGCCTCTCCAACCGCCGCCGCCTCCGCCGCCGTCGCCGTCGCCGTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGATTCCCGGGCATGGCGACGGCGGCGAAGGCGTTCTGGAACAGCCCCGTCGGCCCCAGGACCACCC-ACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATAT-CCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGAGGTTTGCGTGGATGGTACAACCGC-GGAACTACTTGCTTCTGGCTTGTCACGCCTCCAACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCATTGTATAAATATCCTTTATATAAATATTTGGAGAAAAATAAGTATTTATGACTGAAAAAA]

[+] EMBL OSS2040A             [CAAAACGCCACTACAANTACTGTTCTTTTTTGTTCCTAGCAGCCTTGACAACAAGAAACACGCCGCTCAGTTTTGTACTTTAGAGTCTAAATTTTCAACAAAAANAAAAAAACAGTTCATGTGAATTTGGCGTGGAGTCCATGAGACCATGACCCATTCTACCGATNCATTTTCNTCTTTTGAGTNAATTTGTTCCCAAATCCCAACCCACCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSR05341A            [                                                                                                                                                 ACCATGACCCATTCTACCGATTCATTTTCTTCTTTTGAGTGAATTTGTTCCCAAATCCCAACCCACCCCACCTCCAAATCTCCAATCCCCTCGCTCCCTAAATCACGCTCGTCAACCGCGTCGGCCTCTCCAACCGCCGCGGCCTCNGCCGCCGTCGCCGTCGCCGTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGATTCCCGGGCATGGCGACGGCGGCGAAGGCGTTCTGGAACAGCCCCGTNGGACCCAGGACCACCCAACTTCTGG                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSR04831A            [                                                                                                                                                 ACCATGACCCATTCTACCGATTCATTTTCTTCTTTTGAGTGAATTTGTTCCCAAATCCCAACCCACCCCACCTCCAAATCTCCAATCCCCTCGCTCCCTAAATCACGCTCGTCAACCGCGTCGGCCTCTCCAACCGCCGCGGCCTCGGCCGCCGTCGCCGTCGCCGTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGATTCCCGGGCATGGTGACGGCGGCGAAGGCGTTCTGGAACAGCCCCGTCGGCCCCAGGACCACCC ACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTT                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF290916             [                                                                                                                                                  gagtagaaaATTCTACCGATTCATTTTCTTCTTTTGAGTGAATTTGTTCCCAAATCCCAACCCACCCCACCTCCAAATCTCCAATCCCCTCGCTCCCTAAATCACGCTCGTCAACCGCGTCGGCCTCTCCAACCGCCGCCGCCTCCGCCGCCGTCGCCGTCGCCGTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGATTCCCGGGCATGGCGACGGCGGCGAAGGCGTTCTGGAACAGCCCCGTCGGCCCCAGGACCACCC ACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATAT CCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGAGGTTTGCGTGGATGGTACAACCGC GGAACTACTTGCTTCTGGCTTGTCACGCCTNCAACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAG                                                                                                                              ]
[+] EMBL CF336532             [                                                                                                                                                                                                                                    AATCCCCTCGCTCCCTAAATCACGCTCGTCAACCGCGTCGGCCTCTCCAACCGCCGCCGCCTCCGCCGCCGTCGCCGTCGCCGTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGATTCCCGGGCATGGCGACGGCGGCGAAGGCGTTCTGGAACAGCCCCGTCGGCCCCAGGACCACCC ACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATAT CCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGAGGTTTGCGTGGATGGTACAACCGC GGAACTACTTGCTTCTGGCTTGTCACGCCTCCAACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCCGTGCCCTATAGT                                                                           ]
[+] EMBL AK062505             [                                                                                                                                                                                                                                             GCTCCCTAAATCACGCTCGTCAACCGCGTCGGCCTCTCCAACCGCCGCCGCCTCCGCCGCCGTCGCCGTCGCCGTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGATTCCCGGGCATGGCGACGGCGGCGAAGGCGTTCTGGAACAGCCCCGTCGGCCCCAGGACCACCC ACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATAT CCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGAGGTTTGCGTGGATGGTACAACCGC GGAACTACTTGCTTCTGGCTTGTCACGCCTCCAACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCATTGTATAAATATCCTTTATATAAATATTTGGAGAAAAATAAGTA                ]
[-] EMBL CF290915             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         CGCTAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATAT CCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGAGGTTTGCGTGGATGGTACAACCGCGGGAACTACTTGCTTTTGGCTTGTCACGCCTCCAACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCATTGTATAAATATCCTTTATATAAATATTTGGAGAAAAATAAGTATTTATGACTGAAAAAA]


>consensus_14597#0 CAAAACGCCACTACAANTACTGTTCTTTTTTGTTCCTAGCAGCCTTGACAACAAGAAACA CGCCGCTCAGTTTTGTACTTTAGAGTCTAAATTTTCAACAAAAANAAAAAAACAGTTCAT GTGAATTTGGCGTGGAGTCCATGAGACCATGACCCATTCTACCGATTCATTTTCTTCTTT TGAGTGAATTTGTTCCCAAATCCCAACCCACCCCACCTCCAAATCTCCAATCCCCTCGCT CCCTAAATCACGCTCGTCAACCGCGTCGGCCTCTCCAACCGCCGCCGCCTCCGCCGCCGT CGCCGTCGCCGTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGA TTCCCGGGCATGGCGACGGCGGCGAAGGCGTTCTGGAACAGCCCCGTCGGCCCCAGGACC ACCCACTTCTGGGGTCCCGTCGCTAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATG AACAAGCCTCCTGAAATGATATCCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGA CTCTTTATGAGGTTTGCGTGGATGGTACAACCGCGGAACTACTTGCTTCTGGCTTGTCAC GCCTCCAACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTAC CTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAA AGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGT GCATTGTATAAATATCCTTTATATAAATATTTGGAGAAAAATAAGTATTTATGACTGAAA AAA



consensusID : consensus_14597#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 712
fasta sequence
                              [AAAAAAAAAAAAAAAAAAAAAATCTTCTCTCAACCCCTCGCCGCCTCCCGACCTCGACGACGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATGTCGACGGCGGTGAAGGCGTTCCTGAACAG-CCCCGTCGGCCCCAAGACCACCCATTTCTGGGGGCCCGTTGCTAACTGGGGCTTCGTCCTCGCGGGTTTGGTTGACATGAACAAA-CCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAATCGGTTCAGCTCTATCAGA-TGTCTCGGTGGGCTAGGGCACAGGGGTATTTGGAGAAAAAGGAGCCAGAGGCTCAGCAGT-AAAAAAAAGACGCAAAGCGCAGCATTTAGCTTCTCAATAAGAAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATATCTTCCTTGTGTGCCATAAGTGCTTGCCCCTAATGTTATTTGATGTCAAACCTGTTCCAGAAAAATCAGAATCGCACATAATTTCTGGTTGTTTTTCTGAAAACCTTTATGATTTCCTGTTTGTAAAAACTCATCACATTGTGTTGAAAATGATTGGTTCCAAAAAAAAAAAA]

[+] EMBL AK058870             [AAAAAAAAAAAAAAAAAAAAAATCTTCTCTCAACCCCTCGCCGCCTCCCGACCTCGACGACGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATGTCGACGGCGGTGAAGGCGTTCCTGAACAG CCCCGTCGGCCCCAAGACCACCCATTTCTGGGGGCCCGTTGCTAACTGGGGCTTCGTCCTCGCGGGTTTGGTTGACATGAACAAA CCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAATCGGTTCAGCTCTATCAGA TGTCTCGGTGGGCTAGGGCACAGGGGTATTTGGAGAAAAAGGAGCCAGAGGCTCAGCAGT AAAAAGAAGACGCAAAGCGCAGCATTTAGCTTCTCAACAAGAAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATATCTTCCTTGTGTGCCATAAGTGCTTGCCCCTAATGTTATTTGATGTCAAACCTGTTCCAGAAAAATCAGAATCGCACATAATTTCTGGTTGTTTTTCTGAAAACCTTTATGATTTCCTGTTTGTAAAAACTCATCACATTGTGTTGAAAATGATTGG                ]
[+] EMBL CF312334             [                             TCAACCCCTCGCCGCCTCCCGACCTCGACGACGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATGTCGACGGCGGTGAAGGCGTTCCTGAACAG CCCCGTCGGCCCCAAGACCACCCATTTCTGGGGGCCCGTTGCTAACTGGGGCTTCGTCCTCGCGGGTTTGGTTGACATGAACAAA CCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAATCGGTTCAGCTCTATCAGANTGTCTCGGTGGGCTAGGGCACAGGGGTATTTGGAGAAAAAGGAGCCAGAGGCTCAGCAGT AAAAAAAAGACGCAAAGCGCAGCATTTAGCTTCTCAATAAGAAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATATCTTCCTTGTGTGCCAAAAaa                                                                                                                                                        ]
[+] EMBL CA763607             [                                                CGACCTCGACGACGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATGTCGACGGCGGTGAAGGCGTTCCTGAACAG CCCCGTCGGCCCCAAGACCACCCATTTCTGGGGGCCCGTTGCTAACTGGGGCTTCGTCCTCGCGGGTTTGGTTGACATGAACAAA CCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCCATGAATCGGNTCAGCTCTATCAAA TGTCTCGGGGGGCTAGGGGACAGGGGTATTTGGAGAAAAAGGAGCCAGAGGCTCAGCAGT  AAAAAAAGACGCAAAGCGCAGCATTTAGCTTCTCAATAAGAAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATATCTTCCTTGTGTGCCATAAGTGCTTGCCCCTAATGTTATTTGATGTCAAACCTGTTCCAGAAAAATCAGAATCGCACATAATTTCTGGTTGTTTGTCCAAAAAaaa                                                                   ]
[-] EMBL CA763608             [                                                 agggggGACGACGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATGTCGANGGCGGTGAAAGCGTTCCTGAACAG TCCCGTCGGCCCCAAGACCACCCATTTCTGGGGGCCCGTTGCTAACTGGGGCTTCGTCCTCGCGGGTTTGGTTGACATGAACAAA CCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAATCGGTTCAGCTCTATCAGA TGTCTCGGTGGGCTAGGGCACAGGGGTATTTGGAGAAAAAGGAGCCAGAGGCTCAGCAGTAAAAAAAAAGACGCAAAGCGCAGCATTTAGCTTCTCAATAAGAAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATATCTTCCTTGTGTGCCATAAGTGCTTGCCCCTAATGTTATTTGATGTCAAACCTGTTCCAGAAAAATCAGAATCGCACATAATTTCTGGTTGTTTGTCCAAAAACCTTTATGATTTCCTGTTTGTAAAAACTCATCACATTATGTTGAAAATGATTGGTTCCAAAAAAAAAAAA]
[-] EMBL CF312333             [                                                                     CCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATGTCGACGGCGGTGAAGGCGTTCNTGAACAGCCCCCGTCGGCCCCAAGACCACCCATTTCTGGGGGCCCGTTGCTAACTGGGGCTTCGTCCTCGCGGGTTTGGTTGACATGAACAAACCCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAATCGGTTCAGCTCTATCAGA TGTCTCGGTGGGCTAGGGCACAGGGGTATTTGGAGAAAAAGGAGCCAGAGGCTCAGCAGT AAAAAAAAGACGCAAAGCGCAGCATTTAGCTTCTCAATAAGAAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATATCTTCCTTGTGTGCCAAAAaaa                                                                                                                                                       ]
[+] EMBL CA999195             [                                                                                                                                                                                                                                      ACAAA CCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAATCGGTTCAGCTCTATCAGA TGTCTCGGTGGGCTAGGGCACAGGGGTATTTGGAGAAAAAGGAGCCAGAGGCTCAGCAGT AAAAAAAAGACGCAAAGCGCAGCATTTAGCTTCTCAATAAGAAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATATCTTCCTTGTGTGCCATAAGTGCTTGCCCCTAATGTTATTTGATGTCAAACCTGTTCCAGAAAAATCAGAATCGCACATAATTTCTGGTTGTTTTTCTGAAAACCTTTATGATTTCCTGTTTGTAAAAAaaa                                         ]
[+] EMBL CA999194             [                                                                                                                                                                                                                                      ACAAA CCTCCTGAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGATTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAATCGGATCAGCTCTATCAGA TGTCTCGGTGGGCTAAGGAACAAGGGTATTTGGAGAAA                                                                                                                                                                                                                                                                                                        ]


>consensus_14597#1 AAAAAAAAAAAAAAAAAAAAAATCTTCTCTCAACCCCTCGCCGCCTCCCGACCTCGACGA CGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATG TCGACGGCGGTGAAGGCGTTCCTGAACAGCCCCGTCGGCCCCAAGACCACCCATTTCTGG GGGCCCGTTGCTAACTGGGGCTTCGTCCTCGCGGGTTTGGTTGACATGAACAAACCTCCT GAAATGATATCTGGCAATATGACAGCAGCCATGTGCGTGTATTCAGGACTCTTTATGAGA TTTGCCTGGATGGTACAACCACGGAACTATTTACTTTTAGCATGCCATGCTTCCAATGAA TCGGTTCAGCTCTATCAGATGTCTCGGTGGGCTAGGGCACAGGGGTATTTGGAGAAAAAG GAGCCAGAGGCTCAGCAGTAAAAAAAAGACGCAAAGCGCAGCATTTAGCTTCTCAATAAG AAAACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATAT CTTCCTTGTGTGCCATAAGTGCTTGCCCCTAATGTTATTTGATGTCAAACCTGTTCCAGA AAAATCAGAATCGCACATAATTTCTGGTTGTTTTTCTGAAAACCTTTATGATTTCCTGTT TGTAAAAACTCATCACATTGTGTTGAAAATGATTGGTTCCAAAAAAAAAAAA



consensusID : consensus_14597#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence
                              [TAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGAGGTTTGCGTGGATGGTACAACCGCGGAACTACTTGCTTCTGGCTTGTCACGCCTCCAACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCATTGTATAAATATCCTTTATATAAATATTTGGAGAAAAATAAGTATTAAAAAAAAAA]

[-] EMBL CF336533             [TAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATCCGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGAGGTTTGCGTGGATGGTACAACCGCGGAACTACTTGCTTCTGGCTTGTCACGCCTCCAACGAAAGCGTTCAGTTATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCATTGTATAAATATCCTTTATATAAATATTTGGAGAAAAATAAGTATTAAAAAAAAAA]


>consensus_14597#2 TAACTGGGGCTTCGTCCTCGCGGGCTTAGTTGACATGAACAAGCCTCCTGAAATGATATC CGGCAATATGACAGCAGCCATGTGTGTGTATTCTGGACTCTTTATGAGGTTTGCGTGGAT GGTACAACCGCGGAACTACTTGCTTCTGGCTTGTCACGCCTCCAACGAAAGCGTTCAGTT ATATCAGTTCTCACGCTGGGCGAGAGCTCAGGGGTACCTGGAGAATAAAGAGCCAGAGGG CCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTGGATTTCTGT AACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCATTGTATAAATATCCTTTATA TAAATATTTGGAGAAAAATAAGTATTAAAAAAAAAA



consensusID : consensus_14597#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence
                              [CGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATGTCGACGGCGGTGAAGGCGTTCCCTGGAACAGTYCCGTTCGGCCCCAAGGACCACCCATTTTCTKGGGGGGCCSKTTGGCTWAACTGGGGGGCTTCGKKCCTCSCCSGGGTTTTGGTTGRACAWTKRAACMAAACCTYCCTKRAAATGATATWYYKGGCAATATGTRCMGGCCGSCCMTGTGTSSTGTDWTTTCARGGRCTCTTTTWTGWRGAGTTTKCCTGGGATGGKKACAACCCCGGGAACTMTTTTTCYTTTTRGGCATGCCCATGCCTTTCCAATGWAATCGGGTTCAGCTCTATMAGATGTTCTCBGTGGGGCTATGGCACAG]

[+] EMBL AA752666             [CGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATGTCGACGGCGGTGAAGGCGTTCCCTGGAACAGTYCCGTTCGGCCCCAAGGACCACCCATTTTCTKGGGGGGCCSKTTGGCTWAACTGGGGGGCTTCGKKCCTCSCCSGGGTTTTGGTTGRACAWTKRAACMAAACCTYCCTKRAAATGATATWYYKGGCAATATGTRCMGGCCGSCCMTGTGTSSTGTDWTTTCARGGRCTCTTTTWTGWRGAGTTTKCCTGGGATGGKKACAACCCCGGGAACTMTTTTTCYTTTTRGGCATGCCCATGCCTTTCCAATGWAATCGGGTTCAGCTCTATMAGATGTTCTCBGTGGGGCTATGGCACAG]


>consensus_14597#3 CGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGATTGATTGGCCATG TCGACGGCGGTGAAGGCGTTCCCTGGAACAGTYCCGTTCGGCCCCAAGGACCACCCATTT TCTKGGGGGGCCSKTTGGCTWAACTGGGGGGCTTCGKKCCTCSCCSGGGTTTTGGTTGRA CAWTKRAACMAAACCTYCCTKRAAATGATATWYYKGGCAATATGTRCMGGCCGSCCMTGT GTSSTGTDWTTTCARGGRCTCTTTTWTGWRGAGTTTKCCTGGGATGGKKACAACCCCGGG AACTMTTTTTCYTTTTRGGCATGCCCATGCCTTTCCAATGWAATCGGGTTCAGCTCTATM AGATGTTCTCBGTGGGGCTATGGCACAG



consensusID : consensus_14597#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence
                              [GTGGTCGCGGCCGCTTTGCAACCACGGAACTATTTACTTTTAGCATGCCATGCTTTCAATGAATCGGTTCAGCTCTATCAGATGTCTCGGCGGGCTAGGGCACAAGGGTATTTTTAGAAAAAGGAGCCAGAGGCTCATTAGTTAAACAAGACGCCATG]

[+] EMBL BU572422             [GTGGTCGCGGCCGCTTTGCAACCACGGAACTATTTACTTTTAGCATGCCATGCTTTCAATGAATCGGTTCAGCTCTATCAGATGTCTCGGCGGGCTAGGGCACAAGGGTATTTTTAGAAAAAGGAGCCAGAGGCTCATTAGTTAAACAAGACGCCATG]


>consensus_14597#4 GTGGTCGCGGCCGCTTTGCAACCACGGAACTATTTACTTTTAGCATGCCATGCTTTCAAT GAATCGGTTCAGCTCTATCAGATGTCTCGGCGGGCTAGGGCACAAGGGTATTTTTAGAAA AAGGAGCCAGAGGCTCATTAGTTAAACAAGACGCCATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14597#1      ------------------------------------------------------------
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      CAAAACGCCACTACAANTACTGTTCTTTTTTGTTCCTAGCAGCCTTGACAACAAGAAACA 60
consensus_14597#2      ------------------------------------------------------------
                                                                                   

consensus_14597#1      ------------------------------------------------------------
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      CGCCGCTCAGTTTTGTACTTTAGAGTCTAAATTTTCAACAAAAANAAAAAAACAGTTCAT 120
consensus_14597#2      ------------------------------------------------------------
                                                                                   

consensus_14597#1      ------------------------------------------------------------
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      GTGAATTTGGCGTGGAGTCCATGAGACCATGACCCATTCTACCGATTCATTTTCTTCTTT 180
consensus_14597#2      ------------------------------------------------------------
                                                                                   

consensus_14597#1      ------------------------------------------------------------
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      TGAGTGAATTTGTTCCCAAATCCCAACCCACCCCACCTCCAAATCTCCAATCCCCTCGCT 240
consensus_14597#2      ------------------------------------------------------------
                                                                                   

consensus_14597#1      ------------AAAAAAAAAAAAAAAAAAAAAATCTTCTCTCAACCCCTCGCCGCCTCC 48
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      CCCTAAATCACGCTCGTCAACCGCGTCGGCCTCTCCAACCGCCGCCGCCTCCGCCGCCGT 300
consensus_14597#2      ------------------------------------------------------------
                                                                                   

consensus_14597#1      CGACCTCGACGACGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGAT 108
consensus_14597#3      ------------CGACGACGACCGACGACGAGGTGCGGCTGAATTTGCTGGAGGATTGAT 48
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      CGCCGTCGCCGTCGTCCCGTAGCTAAGTGGTGATTTGGAGCAGCTCGGCGGAGGGGCAGA 360
consensus_14597#2      ------------------------------------------------------------
                                                                                   

consensus_14597#1      TGATTGGCCATGTCGACGGCGGTGAAGGCGTTCCT--GAACAGCCCCGT-CGGCCCCAAG 165
consensus_14597#3      TGATTGGCCATGTCGACGGCGGTGAAGGCGTTCCCTGGAACAGTYCCGTTCGGCCCCAAG 108
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      TTCCCGGGCATGGCGACGGCGGCGAAGGCGTTCTG--GAACAGCCCCGT--CGGCCCCAG 416
consensus_14597#2      ------------------------------------------------------------
                                                                                   

consensus_14597#1      -ACCACCCATTTCT---GGGGGCCCGTTG--CTAACTGGGG--CTTCGT----CCTCGCG 213
consensus_14597#3      GACCACCCATTTTCTKGGGGGGCCSKTTGGCTWAACTGGGGGGCTTCGKKCCTCSCCSGG 168
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      GACCACCCACTTCT---GGGGTCCCGTCG--CTAACTGGGG--CTTCGT----CCTCGCG 465
consensus_14597#2      --------------------------------TAACTGGGG--CTTCGT----CCTCGCG 22
                                                                                   

consensus_14597#1      GGTTTGGTTGAC--ATGAA--CAAACCTCC--TGAAATGATAT--CTGGCAATATG-ACA 264
consensus_14597#3      GTTTTGGTTGRACAWTKRAACMAAACCTYCCTKRAAATGATATWYYKGGCAATATGTRCM 228
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      GGCTTAGTTGAC--ATGAA--CAAGCCTCC--TGAAATGATAT--CCGGCAATATG-ACA 516
consensus_14597#2      GGCTTAGTTGAC--ATGAA--CAAGCCTCC--TGAAATGATAT--CCGGCAATATG-ACA 73
                                                                                   

consensus_14597#1      G--CAGCCATGTG-CGTGTATTC---AGGACTCTTT---ATGAGATTTGCCTGGAT--GG 313
consensus_14597#3      GGCCGSCCMTGTGTSSTGTDWTTTCARGGRCTCTTTTWTGWRGAGTTTKCCTGGGATGGK 288
consensus_14597#4      --------------------------------------------GTGGTCGCGGCCGCTT 16
consensus_14597#0      G--CAGCCATGTG-TGTGTATTCT---GGACTCTTT---ATGAGGTTTGCGTGGAT--GG 565
consensus_14597#2      G--CAGCCATGTG-TGTGTATTCT---GGACTCTTT---ATGAGGTTTGCGTGGAT--GG 122
                                                                    *   *  **      

consensus_14597#1      TACAACCACGG-AACTATTTACTTTT---AGCATGCC-ATGC--TTCCAATGAATC--GG 364
consensus_14597#3      KACAACCCCGGGAACTMTTTTTCYTTTTRGGCATGCCCATGCCTTTCCAATGWAATCGGG 348
consensus_14597#4      TGCAACCACGG-AACTATTTACTTTT---AGCATGCC-ATGC--TTTCAATGAATC--GG 67
consensus_14597#0      TACAACCGCGG-AACTACTTGCTTCT---GGCTTGTC-ACGC--CTCCAACGAAAGC--G 616
consensus_14597#2      TACAACCGCGG-AACTACTTGCTTCT---GGCTTGTC-ACGC--CTCCAACGAAAGC--G 173
                         ***** *** ****  **     *    ** ** * * **   * *** * *     *

consensus_14597#1      TTCAGCTCTATCAGATGT-CTCGGTGGG-CTAGGGCACAGGGGTATTTGGAGAAAAAGGA 422
consensus_14597#3      TTCAGCTCTATMAGATGTTCTCBGTGGGGCTATGGCACAG-------------------- 388
consensus_14597#4      TTCAGCTCTATCAGATGT-CTCGGCGGG-CTAGGGCACAAGGGTATTTTTAGAAAAAGGA 125
consensus_14597#0      TTCAGTTATATCAGTTCT-CACGCTGGG-CGAGAGCTCAGGGGTACCTGGAGAATAAAGA 674
consensus_14597#2      TTCAGTTATATCAGTTCT-CACGCTGGG-CGAGAGCTCAGGGGTACCTGGAGAATAAAGA 231
                       ***** * *** ** * * * *   *** * *  ** **                     

consensus_14597#1      GCCAGAGGCTCAGCAGTAAAAAAAAGACGCAAAGCGCAGCATTTAGCTTCTCAATAAGAA 482
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      GCCAGAGGCTCATTAGTTAAACAAGACGCCATG--------------------------- 158
consensus_14597#0      GCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTG 734
consensus_14597#2      GCCAGAGGGCCAGCAGTGAAGATGAAGTCTCTTGCTCAATAAGTAAAGCTTCGTTTCCTG 291
                                                                                   

consensus_14597#1      AACTTGTCTCATGTCCATCAATGCTGAGTCTGTAACACAATATAATCTCAGATCATATCT 542
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      GATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCATTGTATAAATA 794
consensus_14597#2      GATTTCTGTAACGCTTTATTCCGTGCCCTATAGTTGTCTGCATTGTGCATTGTATAAATA 351
                                                                                   

consensus_14597#1      TCCTTGTGTGCCATAAGTGCTTGCCCCTAATGTTATTTGATGTCAAACCTGTTCCAGAAA 602
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      TCCTTTATATAAATATTTGGAGAAAAATAAGTATTTATGACTGAAAAAA----------- 843
consensus_14597#2      TCCTTTATATAAATATTTGGAGAAAAATAAGTATTAAAAAAAAAA--------------- 396
                                                                                   

consensus_14597#1      AATCAGAATCGCACATAATTTCTGGTTGTTTTTCTGAAAACCTTTATGATTTCCTGTTTG 662
consensus_14597#3      ------------------------------------------------------------
consensus_14597#4      ------------------------------------------------------------
consensus_14597#0      ------------------------------------------------------------
consensus_14597#2      ------------------------------------------------------------
                                                                                   

consensus_14597#1      TAAAAACTCATCACATTGTGTTGAAAATGATTGGTTCCAAAAAAAAAAAA 712
consensus_14597#3      --------------------------------------------------
consensus_14597#4      --------------------------------------------------
consensus_14597#0      --------------------------------------------------
consensus_14597#2      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)