These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2264 fasta sequence [CCGCTCACTCCACCATTCCACCAACTAGCTAGCTAGCTAGCCACGCCATCCCTTTCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGTCCGGAGAGAGTAGAGAGGAGGGCGCGCAGCGAGATGGCTTGCCCGGCGCAGTCGATGCTGTCGGCGAGCACCACCAGCTGCTGCGCGTTCCTGAGGAGCAGCGCCGCCGCCAAGCCACAGGCCGCGGCGTCGGCGGCGGCGAGCCTCGCGCGAGGGGGGAGGCTGTTCCTGCTGTCCTGCAACGCCTCGTCGTCGTCGTCGTCGCCGTCGCCTTCTTCACCTCCGCCGCCGGCGCCGGCGGCGGAGGACTGCAACGAGGAGGAGTGCGCGCCGGAGAAGGAGGTGGGGAGCCTGAGCGCGGAGTGGCTGGCGGAGGAGCGGACCAAGGTGGTCGGCACCTTCCCTCCCAAGAAGAAGGGATGGACCGGCTACGTCGAGAAGGACACCGCCGGCCAAACCAACATCTACTCCGTCGAGCCGACGGTGTACGTGGCGGAGAGCGCCATCAGCTCGGGGGCGGCGGGCGCGGCGGCGGACGGGTCGGAGAACACGGCGGCGATCGCCGGCGGCCTCGCCCTCGTCTTCGTCGCCGGCGTGTCGTCCATCCTCATCCAGGTCGGCAAGAACCAGCCGCCGCCGCAGGCCACCGTCTACTCCGGCCCGCCGCTCAGCTACTACGTCGCCAAGTTCCAGCCGTCCCTCGCCGCGGTCGCGCTCCAGCAGCAGCCCGCCGTCGACGCGCCCGCCACAGAGGACGCCTCGTCGCCGGC-GCCGGCGTCCCCCGCCGCCGCCGCCGCAGAGGACCAGCTCTCCTCCTGAACTGCTGCTGCTGCAGATAGAGAAGAAGAAGAGAAGATCAGAAATGTCTGTGACTTCAGACATGATGCTTGTATACGTATCATCACAGTTCACAAAGATTCAAATGTACT-GATGAAGGATATGCACGTATACACTACATGGTAGATT-GATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTTGATCACACGTATGAACACCACCACACACGCACACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTTATT-TATTCACACAAAGCAGCAGGGCATTGCTCACGTACCAATCTACCATCTGCCTTGCCACTACTAACAAGTAAACAAGACGAGATCTTCGGTTCTTCACACGAACGCTTAGCGGTTCAGATTGCTCAAACGACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAA-GTGATTGTACCAAGGGCCGTGGACCTGCTGTGAAATGGACGCGGCCCTGATGAGGATTTCGGCCGATCTCACCACCCGGTCGGTGAGCTTCGTCGCGCCGATGCGCCTCAGGGCGGCGTCGGCGAGCTTCCGTCCCCTGGCACCGCTGCCACCGAGGGTGATCGCGCGGAACGCACAGTAGACGGACCGGGAGACCTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAGGAAGACCCTGGCCAGAATCTGCTTCCTGCTCTCGGTTCTTTCATCTGACGGAGAGCCGGTTGTCGAGCTTGATGACGACGACGACGATGACGACGAACGGAGCATCACCTCCATGATCTTGGCGGTGCTAACGTCGGGGAAGTTGTCCAGTAGCTCTGCGAGAGTGTTGAACAGTTGTGATGTCGCGCTTTCCAGCTCTGTGGGAGTGATGTTTGGGTCGTCGGTCGCCAAAACTTGACGCTGCACAAGCATGCTTGTTGCAATTACAATCACTTGCTGGAATTGACTCTGTACAGACCTCAGCCTCAACCAATTGAGCTTGAAGGTCTCAGGTACTGACTGCATTTGCACACCCTCTATGCCACTGATGAGCTGTAACAACCCAATCCTTATTAGCTGGTCAAGCCTTTGCCCCGTGCACTCTGGTAGCCCCATATCATCTGACACAGGTATTGTAGACTGTCGCTGATCTGGAACTCCATGACCTGATCGGAGGGAGGCAACAAGTGGCTGAGCATGATCTGTTTCTGGCAGAGCTGAAAAAGAGCTGACATGCTCATTCCATTCTACTTCCACGGTATCTTTTGATGTGGAAATCCACTGAGCAGTTGAACGGAGAGCAACTGATGCATTGGACGGGGATCCATAGCGATCAGCAAAAGCCTTCTGCAGGTATTCCACTCCTACCTGAGCCCTTTATAATTGGTTCTAAGAGTTGGATACGTGCTCTACT] [+] EMBL AK100187 [CCGCTCACTCCACCATTCCACCAACTAGCTAGCTAGCTAGCCACGCCATCCCTTTCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGTCCGGAGAGAGTAGAGAGGAGGGCGCGCAGCGAGATGGCTTGCCCGGCGCAGTCGATGCTGTCGGCGAGCACCACCAGCTGCTGCGCGTTCCTGAGGAGCAGCGCCGCCGCCAAGCCACAGGCCGCGGCGTCGGCGGCGGCGAGCCTCGCGCGAGGGGGGAGGCTGTTCCTGCTGTCCTGCAACGCCTCGTCGTCGTCGTCGTCGCCGTCGCCTTCTTCACCTCCGCCGCCGGCGCCGGCGGCGGAGGACTGCAACGAGGAGGAGTGCGCGCCGGAGAAGGAGGTGGGGAGCCTGAGCGCGGAGTGGCTGGCGGAGGAGCGGACCAAGGTGGTCGGCACCTTCCCTCCCAAGAAGAAGGGATGGACCGGCTACGTCGAGAAGGACACCGCCGGCCAAACCAACATCTACTCCGTCGAGCCGACGGTGTACGTGGCGGAGAGCGCCATCAGCTCGGGGGCGGCGGGCGCGGCGGCGGACGGGTCGGAGAACACGGCGGCGATCGCCGGCGGCCTCGCCCTCGTCTTCGTCGCCGGCGTGTCGTCCATCCTCATCCAGGTCGGCAAGAACCAGCCGCCGCCGCAGGCCACCGTCTACTCCGGCCCGCCGCTCAGCTACTACGTCGCCAAGTTCCAGCCGTCCCTCGCCGCGGTCGCGCTCCAGCAGCAGCCCGCCGTCGACGCGCCCGCCACAGAGGACGCCTCGTCGCCGGC GCCGGCGTCCCCCGCCGCCGCCGCCGCAGAGGACCAGCTCTCCTCCTGAACTGCTGCTGCTGCAGATAGAGAAGAAGAAGAGAAGATCAGAAATGTCTGTGACTTCAGACATGATGCTTGTATACGTATCATCACAGTTCACAAAGATTCAAATGTACT GATGAAGGATATGCACGTATACACTACATGGTAGATT GATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGA ] [+] EMBL AK060580 [ CACTCCACCATTCCACCAACTAGCTAGCTAGCTAGCCACGCCATCCCTTTCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGTCCGGAGAGAGTAGAGAGGAGGGCGCGCAGCGAGATGGCTTGCCCGGCGCAGTCGATGCTGTCGGCGAGCACCACCAGCTGCTGCGCGTTCCTGAGGAGCAGCGCCGCCGCCAAGCCACAGGCCGCGGCGTCGGCGGCGGCGAGCCTCGCGCGAGGGGGGAGGCTGTTCCTGCTGTCCTGCAACGCCTCGTCGTCGTCGTCGTCGCCGTCGCCTTCTTCACCTCCGCCGCCGGCGCCGGCGGCGGAGGACTGCAACGAGGAGGAGTGCGCGCCGGAGAAGGAGGTGGGGAGCCTGAGCGCGGAGTGGCTGGCGGAGGAGCGGACCAAGGTGGTCGGCACCTTCCCTCCCAAGAAGAAGGGATGGACCGGCTACGTCGAGAAGGACACCGCCGGCCAAACCAACATCTACTCCGTCGAGCCGACGGTGTACGTGGCGGAGAGCGCCATCAGCTCGGGGGCGGCGGGCGCGGCGGCGGACGGGTCGGAGAACACGGCGGCGATCGCCGGCGGCCTCGCCCTCGTCTTCGTCGCCGGCGTGTCGTCCATCCTCATCCAGGTCGGCAAGAACCAGCCGCCGCCGCAGGCCACCGTCTACTCCGGCCCGCCGCTCAGCTACTACGTCGCCAAGTTCCAGCCGTCCCTCGCCGCGGTCGCGCTCCAGCAGCAGCCCGCCGTCGACGCGCCCGCCACAGAGGACGCCTCGTCGCCGGC GCCGGCGTCCCCCGCCGCCGCCGCCGCAGAGGACCAGCTCTCCTCCTGAACTGCTGCTGCTGCAGATAGAGAAGAAGAAGAGAAGATCAGAAATGTCTGTGACTTCAGACATGATGCTTGTATACGTATCATCACAGTTCACAAAGATTCAAATGTACT GATGAAGGATATGCACGTATACACTACATGGTAGATT GATGAAACCATTTTTAAGTTTCGTATATATACAAGCAT ] [-] EMBL AU162677 [ ATTCCACCAACTAGCTAGCTAGCTAGCCACGCCATCCCTTTCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGTCCGGAGAGAGTAGAGAGGAGGGCGCGCANAG NATGGCTTGCCCGGCGCAGTCGATGCTGTCGGCGAGCACCACCAGCTGCTGCGCGTTCCTGAGGAGCAGCGCCGCCGCCAAGCCACAGGCCGCGGCGTCGGCGGCGGCGAGCCTCGCGCGAAGGGGGAGGCT ] [+] EMBL CB678811 [ CGTCGAGAAGGACACCGCCGGCCAAACCAACATCTACTCCGTCGAGCCGACGGTGTACGTGGCGGAGAGCGCCATCAGCTCGGGGGCGGCGGGCGCGGCGGCGGACGGGTCGGAGAACACGGCGGCGATCGCCGGCGGCCTCGCCCTCGTCTTCGTCGCCGGCGTGTCGTCCATCCTCATCCAGGTCGGCAAGAACCAGCCGCCGCCGCAGGCCACCGTCTACTCCGGCCCGCCGCTCAGCTACTACGTCGCCAAGTTCCAGCCGTCCCTCGCCGCGGTCGCGCTCCAGCAGCAGCCCGCCGTCGACGCGCCCGCCACAGAGGACGCCTCGTCGCCGGC GCCGGCGTCCCCCGCCGCCGCCGCCGCAGAGGACCAGCTCTCCTCCTGAACTGCTGCTGCTGCAGATAGAGAAGAAGAAGAGAAGATCAGAAATGTCTGTGACTTCAGACATGATGCTTGTATACGTATCATCACAGTTCACAAAGATTCAAATGTACT GATGAAGGATATGCACGTATACACTACATGGTAGATT GATGAAACCATTTTTAGGT ] [-] EMBL AU162676 [ GCAGCAGCCCGCCGTCGACGCGCCCGCCACAGAGGACGCCTCGTCGCCGGCNCCCGGCGTCCCCCGCCGCCGCCGCCGCAGAGGACCAGCTCTCCTCCTGAACTGCTGCTGCTGCAGATAGAGAAGAAGAAGAGAAGATCAGAAATGTCTGTGACTTCAGACATGATGCTTGTATACGTATCATCACAGTTCACAAAGATTCAAATGTACT GATGAAGGATATGCACGTATACACTACATGGTAGATT GATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTTGATCACACGTATGAACACCACCACACACGCACACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTTATT TATTCACACAAAGCAGCAGGGCATTGC ] [-] EMBL BI807199 [ tttttttTTCACAAAGATTCAAATGTACT GATGAAGGATATGCACGTATACACTACATGGTAGA T GATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTTGATCACACGTATGAACACCACCACACACGCACACA TGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTTATT TATTCACACAAAGCAGCAGGGCA TG TCACGTACCAATCTACCATCTGCCTTGCCACTACTAACAAGTAAACAAGACGAGATCTTCGGTTCTTCACACGAACGCTTAGCGGTTCAGATTG TCAAACGACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAAGGTGATGGTACCAAGGGCCGTGGACCTGCTGTGAAA GGACGCGG CCTGATGAGGA TTCGG CGATCTCACCACCCGGTCGGTGAGCTTCGTCGCGCCGATG ] [-] EMBL BI808675 [ tttttttttTACTGGATGAAGGATATGCACGTATACACTACATGGTAGATTGGATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTGGATCACACGTATGAACACCACCACACACGCACACATGGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTAATTCTATTCACACAAAGCAGCAGGGCATGGCTCACGTACCAATCTACCATCTGCCTTGCCACTACTAACAAGTAAACAAGACGAGATCTTCGGTTCTTCACACGAACGCTTAGCGGTTCAGATGGCTCAAACAACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAA GTGATGGTACCAAGGGCCG ] [-] EMBL AU083357 [ ttttttttTACACTACATGGTAGATT GATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTTGATCACACGTATGAACACCACCACACACGCACACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTTATT TATTCACACAAAGCAGCAGGGCATTGCTCACGTACCAATCTACCATCTGCCTTGCCACTACTAACAAGTAAACAAGACGAGATCTTCGGTTCTTCACACGAACGCTTAGCGGTTCAGATTGCTCAAACGACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAA GTGATTGTACCAAGGGCCGTGGACCTGCTGTGAAATGGACGCGGCCCTGATGAGGATTTCGGCCGATCTCACCACCCGGNCGGTGAGCTTCGTCGCGCCGATGCGNCTCAGGGCGGCGTCGGCGAGCTTCCGTCCCCTGGCACCGCTGCCACCGAGGG ] [+] EMBL CB679928 [ ATGAAACCATTTTTAAGTTTCGTATATATACAACCTTAGATTTGATCACACGTATGAACACCACCACACACGCACACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTTATT TATTCACACAAAGCAGCAGGGCATTGCTCACGTACCAATCTACCATCTGCCTTGCCACTACTAACAAGTAAACAAGACGAGATCTTCGGTTCTTCACACGAACGCTTAGCGGTTCAGATTGCTCAAACGACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAA GTGATTGTACCAAGGGCCGTGGACCTGCTGTGAAATGGACGCGGCCCTGATGAGGATTTCGGCCGATCTCACCACCCGGTCGGTGAGCTTCGTCGCGCCGATGCGCCTCAGGGCGGCGTCGGCGAGCTTCCGTCCCCTGGCACCGCTGCCACCGAGGGTGATCGCGCGGAACGCACAGTAGACGGACCGGGAGACCTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAGG ] [-] EMBL CB679927 [ GTACCATCTCTTTTATT TATTCACACAAAGCAGCAGGGCATTGCTCACGTACCAATCTACCATCTGCTTGGCCACTACTAACAAGTAAACAAGACGAGATCTTCGGTTCTTCACACGAACGCTTAGCGGTTCAGATTGCTCAAACGACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAA GTGATTGTACCAAGGGCCGTGGACCTGCTGTGAAATGGACGCGGCCCTGATGAGGATTTCGGCCGATCTCACCACCCGGTCGGTGAGCTTCGTCGCGCCGATGCGCCTCAGGGCGGCGTCGGCGAGCTTCCGTCCCCTGGCACCGCTGCCACCGAGGGTGATCGCGCGGAACGCACAGTAGACGGACCGGGAGACCTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAGGA ] [-] EMBL AU065487 [ CACACCAA GTNATTGTACNAAGGGCCGTGNACCTGCTGTNAAATGGANGCGNCCCTGATGAGGATTTCGGCCGATCTCACCANCCGGTCGGTGAGCTTCGTCGCGCCGATGCGCCTCAGGGCGGCGTCGGCGAGCTTCCGTCCCCTGGCACCGCTGCCACCGAGGGTGATCGCGCGGAACGCACAGTAGACGGACCGGGAGACCTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAGGA ] [-] EMBL CB633887 [ TAGACGACCCGGGAGACTTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAGGAAGACCCTGGCCAGAATCTGCTTCCTGCTCTCGGTTCTTTCATCTGACGGAGAGCCGGTTGTCGAGCTTGATGACGACGACGACGATGACGACGAACGGAGCATCACCTCCATGATCTTGGCGGTGCTAACGTCGGGGAAGTTGTCCAGTAGCTCTGCGAGAGTGTTGAACAGTTGTGATGTCGCGCTTTCCAGCTCTGTGGGAGTGATGTTTGGGTCGTCGGTCGCCAAAACTTGACGCTGCACAAGCATGCTTGTTGCAATTACAATCACTTGCTGGAATTGACTCTGTACAGACCTCAGCCTCAACCAATTGAGCTTGAAGGTCTCAGGTACTGACTGCATTTGCACACCCTCTATGCCACTGATGAGCTGTAACAACCCAATCCTTATTAGCTGGTCAAGCCTTTGCCCCGTGCACTCTGGTAGCCCCATATCATCTGACACAGGTATTGTAGACTGTCGCTGATCTGGAACTCCATGACCTGATCGGAGGGAGGCAACAAGTGGCTGAGCATGATCTGTTTCTGGCAGAGCTGAAAAAGAGCTGACATGCTCATTCCATTCTACTTCCACGGTATCTTTTGATGTGGAAATCCACTGAGCAGTTGAACGGAGAGCAACTGATGCATTGGACGGGGATCCATAGCGATCAGCAAAAGCCTTCTGCAGGTATTCCACTCCTACCTGAGCCCTTTATAATTGGTTCTAAGAGTTGGATACGTGCTCTACT] consensusID : consensus_14599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 817 fasta sequence [AAGTTTCGTATATATACAAGCATAGATTTGATCACACGAATGAACACCACCACACACGCACACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTTATTTATTCACACAAAGCAGCAGAGCATTTGCTCACGTACCAATCTACCATCACCCACCCTGACGCTCTGCCTTGCCACTACTAAGTAACAAGTAAACAAGACGAGATCTTCAGTTCTTCACACGAACGCTTCGCGGTTCAGATTGCTCAAACGACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAAGTGATTGTACCAAGGGCCGTGGACCTGCTCTGAAACGGTCGCGGCTCTGATGAGGATTTCGGCCGCCCTCGCCACCCGGCCGGTGAGCTTCGTCGCGCCGATGCGCCTCAGGGCGGCGTCGGCGAGCTTCCGGCCCCTTGCACCGCTGCCGCCGAGGGTGATCGCGCGGAACGCGCAGTAGACGGACCGGGAGACCTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAGGAAGACCCTGGCCAGAATCTGCTTCCTGCTCTCGGTTCTTTCATCTGACGGAGAGCCGGTTGTCGAGCTTGATGACGACGACGACGATGACGACGAACGGAGCATCACCTCCATGATCTTGGCGGTGCTAACGTCGGGGAAGTTGTCCAGTAGCTCTGCGAGAGTGTTGAACAGTTGTGATGTCGCGCTTTCCAGCTCTGTGGGAGTGATGTTTGGGTCGTCGGTCGCCAAAACTTGACGCTGCACAAGCATGCTTGTTGCAATTACAATCACTTGCTGG] [+] EMBL CB633888 [AAGTTTCGTATATATACAAGCATAGATTTGATCACACGAATGAACACCACCACACACGCACACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTTATTTATTCACACAAAGCAGCAGAGCATTTGCTCACGTACCAATCTACCATCACCCACCCTGACGCTCTGCCTTGCCACTACTAAGTAACAAGTAAACAAGACGAGATCTTCAGTTCTTCACACGAACGCTTCGCGGTTCAGATTGCTCAAACGACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAAGTGATTGTACCAAGGGCCGTGGACCTGCTCTGAAACGGTCGCGGCTCTGATGAGGATTTCGGCCGCCCTCGCCACCCGGCCGGTGAGCTTCGTCGCGCCGATGCGCCTCAGGGCGGCGTCGGCGAGCTTCCGGCCCCTTGCACCGCTGCCGCCGAGGGTGATCGCGCGGAACGCGCAGTAGACGGACCGGGAGACCTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAGGAAGACCCTGGCCAGAATCTGCTTCCTGCTCTCGGTTCTTTCATCTGACGGAGAGCCGGTTGTCGAGCTTGATGACGACGACGACGATGACGACGAACGGAGCATCACCTCCATGATCTTGGCGGTGCTAACGTCGGGGAAGTTGTCCAGTAGCTCTGCGAGAGTGTTGAACAGTTGTGATGTCGCGCTTTCCAGCTCTGTGGGAGTGATGTTTGGGTCGTCGGTCGCCAAAACTTGACGCTGCACAAGCATGCTTGTTGCAATTACAATCACTTGCTGG] [-] EMBL CF310687 [ GCACACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTAaaaaa ] consensusID : consensus_14599#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [GCTAGCTAGCTAGCCACGCCATCCCTTTCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGTCCGGAGAGAGTAGAGAGGAGGGCGCGCAGCGAGATGGCTTGCCCGGCGCAGTCGATGCTGTCGGCGAGCACCACCAGCTGCTGCGCGTTCCTGAGGAGCAGCGCCGCCGCCAAGCCACAGGCCGCGGCGTCGGCGGCGGCGAGCCTCGCGCGAGGGGGGAGGCTGTTCCTGCTGTCCTGCAACGCCTCGTCGTCGTCGTCGTCGCCGTCGCCTTCTTCACCTCCGCCGCCGGCGCCGGCGGCGGAGGACTGCAACGAGGAGGAGTGCGCGCCGGAGAAGGAGGTGGGGAGCCTGAGCGCGGAGTGGCTGGCCGAGGAGCGGACCAAGGTGGTCGGCACCTTCCCTCCCAAGAAGAAGGGATGGACCGGCTACGTCGAGAAGGACACCGCCGGNCAAACAACATCTACTCCCGTCCAAGCCCGAAGGGGGAACGGGGGGGAAAAAGGGCCCCCTAATTCTCGGGGGGGGCGGGGGGCCGCCCTCCCTACAAACAGTTTTTTTTTAAAAAATTCCGCCGCCACCGC] [+] EMBL CA754304 [GCTAGCTAGCTAGCCACGCCATCCCTTTCTCCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGTCCGGAGAGAGTAGAGAGGAGGGCGCGCAGCGAGATGGCTTGCCCGGCGCAGTCGATGCTGTCGGCGAGCACCACCAGCTGCTGCGCGTTCCTGAGGAGCAGCGCCGCCGCCAAGCCACAGGCCGCGGCGTCGGCGGCGGCGAGCCTCGCGCGAGGGGGGAGGCTGTTCCTGCTGTCCTGCAACGCCTCGTCGTCGTCGTCGTCGCCGTCGCCTTCTTCACCTCCGCCGCCGGCGCCGGCGGCGGAGGACTGCAACGAGGAGGAGTGCGCGCCGGAGAAGGAGGTGGGGAGCCTGAGCGCGGAGTGGCTGGCCGAGGAGCGGACCAAGGTGGTCGGCACCTTCCCTCCCAAGAAGAAGGGATGGACCGGCTACGTCGAGAAGGACACCGCCGGNCAAACAACATCTACTCCCGTCCAAGCCCGAAGGGGGAACGGGGGGGAAAAAGGGCCCCCTAATTCTCGGGGGGGGCGGGGGGCCGCCCTCCCTACAAACAGTTTTTTTTTAAAAAATTCCGCCGCCACCGC] consensusID : consensus_14599#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [TGAGCTGTAACAACCCAATCCTTATTAGCTGGTCAAGCCTTTGCCCCGTGCACTCTGGTAGCCCCGTATCATCTGCTTATCATGACACTAAATGATTAAGGAGTTCAGAACAATGGCCATACAAGGGGAAAAAAGAATAAATACCTGACACAGGTATTGTAGACTGTCGCTGATCTGGAACTCCATGACCTGATCGGAGGGTGGCAACAAATGGCTGAGCCTGTTACGAGGGATGTGTAAGTAAAATCAACAGCAGGTGAAAATAATAGATACTTGAACTACTATTGCTACAAACAGCGGTTGTGTACTGCTGTGACTACTGCATAAAATTAATTCATAGACTTAACATGATCGGTTTCTGGCAGAGCTGAAAAAGAGCTGACATGCTCATTCCATTCTACTTCCACGGTATCTTTTGATGTGGAAATCCACTGAGCAGTTGAACGGAGAGCAACTGATGCATTGGACGGGAATCCATAGCGATCAGCAAAAGCCTTCTGCAGGTATTCCACTCCACCTGAGCCCTTTATAATTGGTTCTAATAGTTGGATACGTGCTCTACTGACTTCTGTCTTCAGAGCCTG] [+] EMBL AK062454 [TGAGCTGTAACAACCCAATCCTTATTAGCTGGTCAAGCCTTTGCCCCGTGCACTCTGGTAGCCCCGTATCATCTGCTTATCATGACACTAAATGATTAAGGAGTTCAGAACAATGGCCATACAAGGGGAAAAAAGAATAAATACCTGACACAGGTATTGTAGACTGTCGCTGATCTGGAACTCCATGACCTGATCGGAGGGTGGCAACAAATGGCTGAGCCTGTTACGAGGGATGTGTAAGTAAAATCAACAGCAGGTGAAAATAATAGATACTTGAACTACTATTGCTACAAACAGCGGTTGTGTACTGCTGTGACTACTGCATAAAATTAATTCATAGACTTAACATGATCGGTTTCTGGCAGAGCTGAAAAAGAGCTGACATGCTCATTCCATTCTACTTCCACGGTATCTTTTGATGTGGAAATCCACTGAGCAGTTGAACGGAGAGCAACTGATGCATTGGACGGGAATCCATAGCGATCAGCAAAAGCCTTCTGCAGGTATTCCACTCCACCTGAGCCCTTTATAATTGGTTCTAATAGTTGGATACGTGCTCTACTGACTTCTGTCTTCAGAGCCTG] consensusID : consensus_14599#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 95 fasta sequence [ACGTNNNCACTACANGGNAGATTGATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTTGATCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB096745 [ACGTNNNCACTACANGGNAGATTGATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTTGATCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14599#0 ------------------------------------------------------------ consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 AAGTTTCGTATATATACAAGCATAGATTTGATCACACGAATGAACACCACCACACACGCA 60 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 ------------------------------------------------------------ consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 CACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTACCATCTCTTTTATTTATTCAC 120 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 ---CCGCTCACTCCACCATTCCACCAACTAGCTAGCTAGCTAGCCACGCCATCCCTTTCT 57 consensus_14599#2 ------------------------------GCTAGCTAGCTAGCCACGCCATCCCTTTCT 30 consensus_14599#1 ACAAAGCAGCAGAGCATTTGCTCACGTACCAATCTACCATCACCCACCCTGACGCTCTGC 180 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ---------------------------------------TGAGCTGTAACAACCCAATCC 21 consensus_14599#0 CCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGTCCGGAGAGAGTAGAGAGGAGGGC 117 consensus_14599#2 CCTCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTGGTCCGGAGAGAGTAGAGAGGAGGGC 90 consensus_14599#1 CTTGCCACTACTAAGTAACAAGTAAACAAGACGAGATCTTCAGTTCTTCACACGAACGCT 240 consensus_14599#4 -------------------------------------------------ACGTNNNCACT 11 consensus_14599#3 TTATTAGCTGGTCAAGCCTTTGCCCCGTGCACTCTGGTAGCCCCGTATCATCTGCTTATC 81 consensus_14599#0 GCGCAGC-GAGATGGCTTGCCCGGCGCA---GTCGATGCTGTCGGCGAGCACC-ACCAGC 172 consensus_14599#2 GCGCAGC-GAGATGGCTTGCCCGGCGCA---GTCGATGCTGTCGGCGAGCACC-ACCAGC 145 consensus_14599#1 TCGCGGTTCAGATTGCTCAAACGACGCC-GTTTTCACTAGCTTTTCCACCATGAATCACA 299 consensus_14599#4 ACANGG--NAGATTGATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTTGA 69 consensus_14599#3 ATGACAC-TAAAT-GATTAAGGAGTTCA---GAACAATGGCCATACAAGGGGAAAAAAGA 136 * ** * * * * * consensus_14599#0 TGCTGCGCGTTCCTGAGGAGCAGCGCCGCCGCCAAGCCACAG-----GCCGCGGCGTCGG 227 consensus_14599#2 TGCTGCGCGTTCCTGAGGAGCAGCGCCGCCGCCAAGCCACAG-----GCCGCGGCGTCGG 200 consensus_14599#1 CCAAGTGATTGTACCAAGGGCCGTGGACCTGCTCTGAAACGGTCGCGGCTCTGATGAGGA 359 consensus_14599#4 TCAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 95 consensus_14599#3 ATAAATACCTGACACAGGTATTGTAGACTGTCGCTGATCTGG-----AACTCCATGACCT 191 * consensus_14599#0 CGGCGGCGAGCCTCGCGCGAGGGGGGAGGCTGTTCCTGCTGTCCTGCAACGCCTCGTCGT 287 consensus_14599#2 CGGCGGCGAGCCTCGCGCGAGGGGGGAGGCTGTTCCTGCTGTCCTGCAACGCCTCGTCGT 260 consensus_14599#1 TTTCGGCCGCCCTCGCCACCCGGCCGGTGAGCTTCGTCGCGCCGATGCGCCTCAGGGCGG 419 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 GATCGGAGGGTGGCAACAAATGGCTGAGCCTGTTACGAGGGATGTGTAAGTAAAATCAAC 251 consensus_14599#0 CGTCGTCGTCGCCG-TCGCCTTCTTCACCTCCGCCGCCGGCGCCGGCGGCGGAGGACTGC 346 consensus_14599#2 CGTCGTCGTCGCCG-TCGCCTTCTTCACCTCCGCCGCCGGCGCCGGCGGCGGAGGACTGC 319 consensus_14599#1 CGTCGGCGAGCTTC-CGGCCCCTTGCACCGCTGCCGCCGAGGGTGATCGCGCGGAACGCG 478 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 AGCAGGTGAAAATAATAGATACTTGAACTACTATTGCTACAAACAGCGGTTGTGTACTGC 311 consensus_14599#0 AACGAG-GAGGAGTGCGCGCCGGAGAAGGAGGTGGGGAGCCTGAGCGCGGAGTGGCTGGC 405 consensus_14599#2 AACGAG-GAGGAGTGCGCGCCGGAGAAGGAGGTGGGGAGCCTGAGCGCGGAGTGGCTGGC 378 consensus_14599#1 CAGTAG-ACGGACCGGGAGACCTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAG 537 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 TGTGACTACTGCATAAAATTAATTCATAGACTTAACATGATCGGTTTCTGGCAGAGCTGA 371 consensus_14599#0 GGAGGAGCGGACCAAGGTGGTCGGCACCTTCCC------TCCCAAGAAGAAGGGATGGAC 459 consensus_14599#2 CGAGGAGCGGACCAAGGTGGTCGGCACCTTCCC------TCCCAAGAAGAAGGGATGGAC 432 consensus_14599#1 GAAGACCCTGGCCAGAATCTGCTTCCTGCTCTCGGTTCTTTCATCTGACGGAGAGCCGGT 597 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 AAAAGAGCTGACATGCTCATTCCATTCTACTTCCACGGTATCTTTTGATGTGGAAATCCA 431 consensus_14599#0 CGGCTACGTCGAGAAGGACACCGCCGGCCAAACCAACATCTACTCCG--TCGAGCCGACG 517 consensus_14599#2 CGGCTACGTCGAGAAGGACACCGCCGGNCAAAC-AACATCTACTCCCGTCCAAGCCCGAA 491 consensus_14599#1 TGTCGAGCTTGATGACGACGACGACGATGACGACGAACGGAGCATCACCTCCATGATCTT 657 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 CTGAGCAGTTGA-ACGGAGAGCAACTGATGCATTGGACGGGAATCCATAGCGATCAGCAA 490 consensus_14599#0 GTGTACGTGGCGGAGAGCGCCATCAGCTCGGGGGCGGCGGGCGCGGCGGCGGACGGGTCG 577 consensus_14599#2 GGGGGAACGGGGGGGAAAA--AGGGCCCCCTAATTCTCGGGGGGGGCGGGGGGCCGCCCT 549 consensus_14599#1 GGCGGTGCTAACGTCGGGGAAGTTGTCCAGTAGCTCTGCGAGAGTGTTGAACAGTTGTGA 717 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 AAGCCTTCTGCAGGTATTCC-ACTCCACCTGAGCCCTTTATAATTGGTTCTAATAGTTGG 549 consensus_14599#0 GAGAACACGGCGGCGATCGCCGGCGGCCTCGCCCTCGTCTTCGTCGCCGGCGTGTCGTCC 637 consensus_14599#2 CCCTACAAACAGTTTTTTTTTAAAAAATTC--CGCCGCCACCGC---------------- 591 consensus_14599#1 TGTCGCGCTTTCCAGCTCTGTGGGAGTGATGTTTGGGTCGTCGGTCGCCAAAACTTGACG 777 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ATACGTGCTCTACTGACTTCTGTCTTCAGAGCCTG------------------------- 584 consensus_14599#0 ATCCTCATCCAGGTCGGCAAGAACCAGCCGCCGCCGCAGGCCACCGTCTACTCCGGCCCG 697 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 CTGCACAAGCATGCTTGTTGCAATTACAATCACTTGCTGG-------------------- 817 consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 CCGCTCAGCTACTACGTCGCCAAGTTCCAGCCGTCCCTCGCCGCGGTCGCGCTCCAGCAG 757 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 CAGCCCGCCGTCGACGCGCCCGCCACAGAGGACGCCTCGTCGCCGGCGCCGGCGTCCCCC 817 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GCCGCCGCCGCCGCAGAGGACCAGCTCTCCTCCTGAACTGCTGCTGCTGCAGATAGAGAA 877 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GAAGAAGAGAAGATCAGAAATGTCTGTGACTTCAGACATGATGCTTGTATACGTATCATC 937 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 ACAGTTCACAAAGATTCAAATGTACTGATGAAGGATATGCACGTATACACTACATGGTAG 997 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 ATTGATGAAACCATTTTTAAGTTTCGTATATATACAAGCATAGATTTGATCACACGTATG 1057 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 AACACCACCACACACGCACACATTGTTCAGGATTTCAGATACAAGCATAGTACAGTACCA 1117 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 TCTCTTTTATTTATTCACACAAAGCAGCAGGGCATTGCTCACGTACCAATCTACCATCTG 1177 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 CCTTGCCACTACTAACAAGTAAACAAGACGAGATCTTCGGTTCTTCACACGAACGCTTAG 1237 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 CGGTTCAGATTGCTCAAACGACGCCGTTTTCACTAGCTTTTCCACCATGAATCACACCAA 1297 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GTGATTGTACCAAGGGCCGTGGACCTGCTGTGAAATGGACGCGGCCCTGATGAGGATTTC 1357 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GGCCGATCTCACCACCCGGTCGGTGAGCTTCGTCGCGCCGATGCGCCTCAGGGCGGCGTC 1417 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GGCGAGCTTCCGTCCCCTGGCACCGCTGCCACCGAGGGTGATCGCGCGGAACGCACAGTA 1477 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GACGGACCGGGAGACCTTCTTGAAGACGGGGTCATCGGTCTGGAGGCTCTTGAGGAAGAC 1537 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 CCTGGCCAGAATCTGCTTCCTGCTCTCGGTTCTTTCATCTGACGGAGAGCCGGTTGTCGA 1597 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GCTTGATGACGACGACGACGATGACGACGAACGGAGCATCACCTCCATGATCTTGGCGGT 1657 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GCTAACGTCGGGGAAGTTGTCCAGTAGCTCTGCGAGAGTGTTGAACAGTTGTGATGTCGC 1717 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GCTTTCCAGCTCTGTGGGAGTGATGTTTGGGTCGTCGGTCGCCAAAACTTGACGCTGCAC 1777 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 AAGCATGCTTGTTGCAATTACAATCACTTGCTGGAATTGACTCTGTACAGACCTCAGCCT 1837 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 CAACCAATTGAGCTTGAAGGTCTCAGGTACTGACTGCATTTGCACACCCTCTATGCCACT 1897 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GATGAGCTGTAACAACCCAATCCTTATTAGCTGGTCAAGCCTTTGCCCCGTGCACTCTGG 1957 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 TAGCCCCATATCATCTGACACAGGTATTGTAGACTGTCGCTGATCTGGAACTCCATGACC 2017 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 TGATCGGAGGGAGGCAACAAGTGGCTGAGCATGATCTGTTTCTGGCAGAGCTGAAAAAGA 2077 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 GCTGACATGCTCATTCCATTCTACTTCCACGGTATCTTTTGATGTGGAAATCCACTGAGC 2137 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 AGTTGAACGGAGAGCAACTGATGCATTGGACGGGGATCCATAGCGATCAGCAAAAGCCTT 2197 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 CTGCAGGTATTCCACTCCTACCTGAGCCCTTTATAATTGGTTCTAAGAGTTGGATACGTG 2257 consensus_14599#2 ------------------------------------------------------------ consensus_14599#1 ------------------------------------------------------------ consensus_14599#4 ------------------------------------------------------------ consensus_14599#3 ------------------------------------------------------------ consensus_14599#0 CTCTACT 2264 consensus_14599#2 ------- consensus_14599#1 ------- consensus_14599#4 ------- consensus_14599#3 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||