These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1120 fasta sequence [TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCTGCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAAAGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGAAGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAATCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTTTGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGATCACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGCAGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTACAAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGGTCCTGTTTTTTAATTTGCCCTGGGGACGTTTGGATTCATGATGGATCATGGATGATGCATCCTGTAGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTATTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA] [+] EMBL AK064485 [TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCTGCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAAAGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGAAGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAATCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTTTGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGATCACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGCAGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTACAAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGGTCCTGTTTTTTAATTTGCCCTGGGGACGTTTGGATTCATGATGGATCATGGATGATGCATCCTGTAGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTATTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA] consensusID : consensus_1460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [GATTCGGCACGAGCTAGCTTCCACCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGATCACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGCCNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTCNANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTTTTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA] [+] EMBL AA752814 [GATTCGGCACGAGCTAGCTTCCACCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGATCACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGCCNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTCNANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTTTTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1460#0 TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCT 60 consensus_1460#1 ------------------------------------------------------------ consensus_1460#0 GCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAA 120 consensus_1460#1 ------------------------------------------------------------ consensus_1460#0 AGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGA 180 consensus_1460#1 ------------------------------------------------------------ consensus_1460#0 AGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAA 240 consensus_1460#1 ------------------------------------------------------------ consensus_1460#0 TCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTT 300 consensus_1460#1 ------------------------------------------------------------ consensus_1460#0 TGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGT 360 consensus_1460#1 ------------GATTCGGCACGAG-------CTAGCTTCCA-CCTGACGCTGCACAGGT 40 * ***** ********** ***************** consensus_1460#0 TATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAAT 420 consensus_1460#1 TATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAAT 100 ************************************************************ consensus_1460#0 CTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGG 480 consensus_1460#1 CTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGG 160 ************************************************************ consensus_1460#0 CATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAA 540 consensus_1460#1 CATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAA 220 **************************** ******************************* consensus_1460#0 GATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGC 600 consensus_1460#1 GATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGC 280 ************************************************************ consensus_1460#0 GGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGAT 660 consensus_1460#1 GGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGAT 340 ******************************************* ***** ********** consensus_1460#0 CACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTT 720 consensus_1460#1 CACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTT 400 ****************** ***************************************** consensus_1460#0 GAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATT 780 consensus_1460#1 GAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATT 460 ********************** ********** ************************** consensus_1460#0 CTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGC 840 consensus_1460#1 CTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGC 520 ********************* ************** ***** ***************** consensus_1460#0 AGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTAC 900 consensus_1460#1 CNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTC 580 ****** ************ * * ******* * ** * ***** ****** **** * consensus_1460#0 AAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGG-TCCTGTTTTT 959 consensus_1460#1 NANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTT 640 * ****************** ******** *** * ** * *** ** *** ****** consensus_1460#0 T--AATTTGCCCT--GGGGACGTTT-GGATTCATGATGGATCATGGATGATGCATCCTGT 1014 consensus_1460#1 TTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA---------------------- 678 * ********* ********** ****** consensus_1460#0 AGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTA 1074 consensus_1460#1 ------------------------------------------------------------ consensus_1460#0 TTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA 1120 consensus_1460#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||