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Oryza sativa
cluster # 1460 cluster # 1460       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1460#0 length = 1120 sequences # 1  
consensus_1460#1 length = 678 sequences # 1  

consensusID : consensus_1460#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1120
fasta sequence
                              [TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCTGCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAAAGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGAAGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAATCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTTTGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGATCACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGCAGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTACAAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGGTCCTGTTTTTTAATTTGCCCTGGGGACGTTTGGATTCATGATGGATCATGGATGATGCATCCTGTAGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTATTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA]

[+] EMBL AK064485             [TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCTGCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAAAGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGAAGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAATCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTTTGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGATCACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGCAGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTACAAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGGTCCTGTTTTTTAATTTGCCCTGGGGACGTTTGGATTCATGATGGATCATGGATGATGCATCCTGTAGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTATTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA]


>consensus_1460#0 TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCT GCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAA AGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGA AGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAA TCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTT TGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGT TATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAAT CTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGG CATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAA GATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGC GGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGAT CACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTT GAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATT CTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGC AGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTAC AAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGGTCCTGTTTTTT AATTTGCCCTGGGGACGTTTGGATTCATGATGGATCATGGATGATGCATCCTGTAGCAAG GAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTATTTGGG TGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA



consensusID : consensus_1460#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence
                              [GATTCGGCACGAGCTAGCTTCCACCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGATCACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGCCNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTCNANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTTTTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA]

[+] EMBL AA752814             [GATTCGGCACGAGCTAGCTTCCACCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGATCACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGCCNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTCNANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTTTTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA]


>consensus_1460#1 GATTCGGCACGAGCTAGCTTCCACCTGACGCTGCACAGGTTATGCGAAAATTGCAAAGCA CATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAATCTACGCTGACGTTAGGAGGA ACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGGCATGCAAGGAATCGTGTCGG AGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAAGATCAAAGAGGCTAACCTCT CCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGCGGTGTACATGCAACATCTGA TGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGATCACCGAGGCCGTCTCTGANC TCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTTGAGCAATGGGGCAGCAAAAG ACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATTCTTGCTGAGGCTCATCCCTG ANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGCCNACTTTANTGACTGATCTG TTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTCNANTTTACAAAACTTTTAAA TTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTTTTNAATTTGCCCCTGGGGGA CGTTTTGGATTCCCTNAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1460#0      TAAAGAAGATGGTAAAATTTTAGATAAGCGTGTCACAGACCTTCAGTTGGAAGACTTCCT 60
consensus_1460#1      ------------------------------------------------------------
                                                                                  

consensus_1460#0      GCTATATGGCCCACAAAATGAGCAGGGAAAGGGTGGAAAACCCTTGCTACGGAAACTGAA 120
consensus_1460#1      ------------------------------------------------------------
                                                                                  

consensus_1460#0      AGATGGTCGGATAGTGAATTGGAATGTGCAGTCAGATGACCCTCTTTGCACACTTCAAGA 180
consensus_1460#1      ------------------------------------------------------------
                                                                                  

consensus_1460#0      AGCTTTCGAGAAGGTCAATCCTAGATTGGGCTTCAATATTGAGCTCAAATTTGATGACAA 240
consensus_1460#1      ------------------------------------------------------------
                                                                                  

consensus_1460#0      TCTTGAATACCAGGAGGAAGAGCTCACTTGTATCCTCCAGGCCATCCTGAAGGTTGTTTT 300
consensus_1460#1      ------------------------------------------------------------
                                                                                  

consensus_1460#0      TGAGTATGCCAAGGATCGGCCTATTATTTTCTCTAGCTTCCAGCCTGACGCTGCACAGGT 360
consensus_1460#1      ------------GATTCGGCACGAG-------CTAGCTTCCA-CCTGACGCTGCACAGGT 40
                                  *  *****            ********** *****************

consensus_1460#0      TATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAAT 420
consensus_1460#1      TATGCGAAAATTGCAAAGCACATACCCTGTTTACTTTTTGACTAATGGAGGCACAGAAAT 100
                      ************************************************************

consensus_1460#0      CTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGG 480
consensus_1460#1      CTACGCTGACGTTAGGAGGAACTCATTGGAAGAGGCCATCAAGCTATGCCTCGCCAGCGG 160
                      ************************************************************

consensus_1460#0      CATGCAAGGAATCGTGTCGGAGGCACGAGGAATTTTCAGGCACCCCGCTGCTGTACCAAA 540
consensus_1460#1      CATGCAAGGAATCGTGTCGGAGGCACGANGAATTTTCAGGCACCCCGCTGCTGTACCAAA 220
                      **************************** *******************************

consensus_1460#0      GATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGC 600
consensus_1460#1      GATCAAAGAGGCTAACCTCTCCCTACTGACTTATGGAACACTGAACAACGTACCGGAGGC 280
                      ************************************************************

consensus_1460#0      GGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCGACCTAGTGCAGGAGAT 660
consensus_1460#1      GGTGTACATGCAACATCTGATGGGGGTGAACGGTGTGATCGTCNACCTANTGCAGGAGAT 340
                      ******************************************* ***** **********

consensus_1460#0      CACCGAGGCCGTCTCTGAGCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTT 720
consensus_1460#1      CACCGAGGCCGTCTCTGANCTCATCACCGTCCCGGAGCCTGACCTGAACGCCGATAATTT 400
                      ****************** *****************************************

consensus_1460#0      GAGCAATGGGGCAGCAAAAGACGCCGCAACGCCACATTTCTCGCAGTGTGAAATCTCATT 780
consensus_1460#1      GAGCAATGGGGCAGCAAAAGACNCCGCAACGCCNCATTTCTCGCAGTGTGAAATCTCATT 460
                      ********************** ********** **************************

consensus_1460#0      CTTGCTGAGGCTCATCCCTGAGCTTGTGCAATAATCGATCCAGTTGCCTTGCTGGTCTGC 840
consensus_1460#1      CTTGCTGAGGCTCATCCCTGANCTTGTGCAATAATCNATCCANTTGCCTTGCTGGTCTGC 520
                      ********************* ************** ***** *****************

consensus_1460#0      AGACTTTAGTGACTGATCTGTATACAGGAAGAAGAGGAGAGACCCCTTGTGGAGGGTTAC 900
consensus_1460#1      CNACTTTANTGACTGATCTGTTTTCNGGAAGAANAAGANANACCCCNTGTGGAAGGTTTC 580
                        ****** ************ * * ******* * ** * ***** ****** **** *

consensus_1460#0      AAGTTTACAAAACTTTTAAATAGGTTGATGTACTAGAGCTAAGCCCTGG-TCCTGTTTTT 959
consensus_1460#1      NANTTTACAAAACTTTTAAATTNGTTGATGTTCTANAACTTAACCCCGGGTCCNGTTTTT 640
                       * ******************  ******** *** * ** * *** ** *** ******

consensus_1460#0      T--AATTTGCCCT--GGGGACGTTT-GGATTCATGATGGATCATGGATGATGCATCCTGT 1014
consensus_1460#1      TTNAATTTGCCCCTGGGGGACGTTTTGGATTCCCTNAA---------------------- 678
                      *  *********   ********** ******                            

consensus_1460#0      AGCAAGGAGTTGAAACAGTTGTTGTTACTGTTGTATCTGTAAGACTGTAACGACGACCTA 1074
consensus_1460#1      ------------------------------------------------------------
                                                                                  

consensus_1460#0      TTTGGGTGGAGTTGAATTGCAATGCGGAATTTGGCAAAAAAAAAAA 1120
consensus_1460#1      ----------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)