These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14600#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1452 fasta sequence [CCTCCTCCCTCCTACAACCCCAATCCCCCTTCTTCTTCTTCTTCTTGTACTTGTTGTTCTTGCTCTTGTTCCAGTGTTGCAGCAGCAGCAGCAGCAGCGGAGGCGCAAGAAGACGAGCTAGAGAGAGAGAATCAGAGGAGAGCTTGGGTGAGATGGGTGAGTGCAGAGGAGGAGGAGGAGGAGGAGATGGGCTGATCAAGCTGTTCGGGAAGACGATCCCGGTGCAGCCGGATGCCAAGGATGTTCAGCAGCATAGTGGCAGTAGCAGCAGCTCAACCGAATCCGACGTCCAAGAAACCGCCGCTGTCGCCGTCGCCGACCCCTCCCCGCGGTCGGAGGTCGTCGACGGCGAGAGCCCGCCGCAGCCGGGCGGCGAGGCGGCGAGCCATCAGCAGCAGCAGAAGGAGATGAAGCTGAAGAAGCCGGACAAGATCCTGCCATGCCCGCGGTGCAGCAGCATGGACACCAAGTTCTGCTACTTCAACAACTACAACGTCAACCAGCCTCGCCACTTCTGCAAGCACTGCCAGCGCTACTGGACCGCCGGCGGCGCCATGCGCAACGTCCCCGTCGGCGCCGGCGTACTGGGGCTGCATGATTCCACCTCCTGGAGCTTGGAGCCTCCCATGGCCGGCCACAGTCCAGTCTCAGGCCATCTCATCATCATCACCACCTACAAGTGCTACACCTTCAGTCTCCTCCTTCACACTAGGCAAGCATCCCAGAGAGGGTGGTGATCATGAGGCAAGAGATCACCATGGCAATGGTAAAGTGTGGGTGCCGAAGACGATCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCA-GGAGGGATCTTGAAGGCCATCTTGCA-AGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG-AACA-CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA-CTTGTGGAGATATA-GTTGTAACCA-TAGGTAGCA-TGTAAATACTATTTAGAAAATAG-CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG-CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCATTTCTTCAGCAATCTGTTGTAATATTGTTGCAAGCTTCAGTCTGAAGAATAGTTTCAGTGTGCAACTAATTGCACCATAAAAAAAAA] [+] EMBL AK068588 [CCTCCTCCCTCCTACAACCCCAATCCCCCTTCTTCTTCTTCTTCTTGTACTTGTTGTTCTTGCTCTTGTTCCAGTGTTGCAGCAGCAGCAGCAGCAGCGGAGGCGCAAGAAGACGAGCTAGAGAGAGAGAATCAGAGGAGAGCTTGGGTGAGATGGGTGAGTGCAGAGGAGGAGGAGGAGGAGGAGATGGGCTGATCAAGCTGTTCGGGAAGACGATCCCGGTGCAGCCGGATGCCAAGGATGTTCAGCAGCATAGTGGCAGTAGCAGCAGCTCAACCGAATCCGACGTCCAAGAAACCGCCGCTGTCGCCGTCGCCGACCCCTCCCCGCGGTCGGAGGTCGTCGACGGCGAGAGCCCGCCGCAGCCGGGCGGCGAGGCGGCGAGCCATCAGCAGCAGCAGAAGGAGATGAAGCTGAAGAAGCCGGACAAGATCCTGCCATGCCCGCGGTGCAGCAGCATGGACACCAAGTTCTGCTACTTCAACAACTACAACGTCAACCAGCCTCGCCACTTCTGCAAGCACTGCCAGCGCTACTGGACCGCCGGCGGCGCCATGCGCAACGTCCCCGTCGGCGCCGGCGTACTGGGGCTGCATGATTCCACCTCCTGGAGCTTGGAGCCTCCCATGGCCGGCCACAGTCCAGTCTCAGGCCATCTCATCATCATCACCACCTACAAGTGCTACACCTTCAGTCTCCTCCTTCACACTAGGCAAGCATCCCAGAGAGGGTGGTGATCATGAGGCAAGAGATCACCATGGCAATGGTAAAGTGTGGGTGCCGAAGACGATCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCA GGAGGGATCTTGAAGGCCATCTTGCA AGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG AACA CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATT ] [+] EMBL CB664097 [ CCTACAACCCCAATCCCCCTTCTTCTTCTTCTTCTTGTACTTGTTGTTCTTGCTCTTGTTCCAGTGTTGCAGCAGCAGCAGCAGCAGCGGAGGCGCAAGAAGACGAGCTAGAGAGAGAGAATCAGAGGAGAGCTTGGGTGAGATGGGTGAGTGCAGAGGAGGAGGAGGAGGAGGAGATGGGCTGATCAAGCTGTTCGGGAAGACGATCCCGGTGCAGCCGGATGCCAAGGATGTTCAGCAGCATAGTGGCAGTAGCAGCAGCTCAACCGAATCCGACGTCCAAGAAACCGC ] [-] EMBL CB664098 [ TCTCCTCCTTCACACTAGGCAAGCATCCCAGAGAGGGTGGTGATCATGAGGCAAGAGATCACCATGGCAATGGTAAAGTGTGGGTGCCGAAGACGATCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGTTTTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCA GGAGGGATCTTGAAGGCCATCTTGCA AGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG AACA CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCAT ] [+] EMBL BM420743 [ AGAGGCGGCGACAAGGTGGACGATAACAACGACGACGATGGCACCAGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCCAAGAGGGACGGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCACGGAGGGATCTTGAAGGCCATCTTGCANAGA TTTTTTTTTTTTGCCTTCATCCTTTCTGCTGCTTCTGAACTG AACACCGAAGTTAGTAGCCTGACAGTACTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTACCTTGTGGAGATATACGTTGTAACCACTAGGTAGCACTGTAAATACTATTTAGAAAATAGCCTGTTTAAATGGATATAGCTAGTATTT GGTTTGGAGCCCCGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATC ATTAGATGGAATATATGGCTTGAGGTATTTCATTTCTTCAaaaaaaa ] [+] EMBL CA764286 [ CAACGACGACGATGGCACCAGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACGGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCA GGAGGGATCTTGAAGGCCATCTTGCA AGA TTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG AACA CGAAGTTAGTAGCCTGACAGTACTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATT ] [+] EMBL AA753623 [ agnGGACAGC AGACGGGGAA AT CGGNGAT AAGAG TT NCG TTTTG AAACCAA CCCNTNG GGTTACCNNATCCG GA CTTTCA GGNGGNAT TTGAA GCCATNTTGCA AGA TTTTTTTTTTTTGCCTTCATCCTNTCTGCTGCTTCTGAACTGAAACA CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCATTTCTTCAGCAATCTGTTGTAATATTGTTGCAAGCTTCAGTCTGAAGAATAGTTTCAGTGTGCAACTAATTGCACCATAAAAAAAAA] [+] EMBL AU172725 [ AGGGATCTTGAAGGCCATCTTGCA AGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTG AACA CGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGACATAGCTA CTTGTGGAGATATA GTTGTAACCA TAGGTAGCA TGTAAATACTATTTAGAAAATAG CTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAG CCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCATTTCTTCAGCAATCTGTTGTAATATTGTTGCAAGCTTCAGTCTGAAGAATAGTTTCAGTGTGCAACTAATTGCACCATAAAAAAAA ] consensusID : consensus_14600#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 919 fasta sequence [CCCCCGGCCAAATTGAAACTCTTGTCGTCCTCACCTGGAAGGAACCCCCCGAACACACGCAGCCATGGCGAAGCCTAGCGGCGGCGGCCTCCTCGACCTGGAGCACCACTTCGCCTTCTACGGCGCGTACCACAGCAACGCCGTCAACGTCTTCATCCACACGCTCTTCGTCTGGCCCATCTTCCTCACCGCGCTCCTCCTCCTCCACCTCGCCGCCCCCTCCGCGCACGCCGCGGCCGCCGGCGCCGCCGTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCGCCGCCCTCGCCGCCCGCCTCGGCTTCT-CCGCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTT-GAGAAGCGAGCGCCTGCCCTCCTT-GACAATCTT-GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA-CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT-AGAC-GGAACTGTGTTAACATGTCGCT-GCCAACATATTGCCTTA-TTTA-TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTCTTTTTACGGTGGTCTCTTCTGTACTGGTACTCTACTATAAGCTGGAAAAATATA] [+] EMBL AK070066 [CCCCCGGCCAAATTGAAACTCTTGTCGTCCTCACCTGGAAGGAACCCCCCGAACACACGCAGCCATGGCGAAGCCTAGCGGCGGCGGCCTCCTCGACCTGGAGCACCACTTCGCCTTCTACGGCGCGTACCACAGCAACGCCGTCAACGTCTTCATCCACACGCTCTTCGTCTGGCCCATCTTCCTCACCGCGCTCCTCCTCCTCCACCTCGCCGCCCCCTCCGCGCACGCCGCGGCCGCCGGCGCCGCCGTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCGCCGCCCTCGCCGCCCGCCTCGGCTTCT CCGCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTT GAGAAGCGAGCGCCTGCCCTCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTCTTTTTACGGTGGTCTCTTCTGTACTGGTACTCTACTATAAGCTGGAAAAATATA] [+] EMBL CA755709 [ TCTTGTCGTCCTCACCTGGAAGGAACCCCCCGAACACACGCAGCCATGGCGAAGCCTAGCGGCGGCGGCCTCCTCGACCTGGAGCACCACTTCGCCTTCTACGGCGCGTACCACAGCAACGCCGTCAACGTCTTCATCCACACGCTCTTCGTCTGGCCCATCTTCCTCACCGCGCTCCTCCTCCTCCACCTCGCCGCCCCCTCCGCGCACGCCGCGGCCGCCGGCGCCGCCGTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCGGCGCCGCCCTCGCCGCCCGCCTCGGATTCTCCCCCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTTGGAGAAGCGAGCGCCTGCCCTCCTTGGAC ATCTTGGCCCCAGCTTTCTGGATGGCTCCGTTCTTCGTGGTACTAGAGGCTCTTCACCAGGTTGGTGGGGTACGAACGGTACCCCGGTTTTCACGCCCAAG GGAGAAGCTGATTGGCGAGGCCGGCAGGGAATGGCATGACCAGAAAGGCAAAAAaaaacac ] [-] EMBL AU160919 [ GTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCNCCGCCCTCGCCGCCCGCCTCGGCTTCT CCGCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAGTTCATTGGCCATGGTGTTTTT GAGAAGCGAGCGCCTGCCCTCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAA ] [-] EMBL BI809185 [ TCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCTGGCGCCCTCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCGCCGCCCTCGCCGCCCGCCTCGGCTTCT CCGCCGGATGGAAGGTGGTATTGGTAGCTCAGCTGTTCTG TGGACTATGCAGTTCA TGGCCATGGTGTTTTT GAGAAGCGAGCGCCTGCCCTCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTG TGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGA TTGGAAG TGG AA CCCCATACTG AGAGGCGTCTTAATCACGTGG CATTTGATA TTTGATTAAGACGGGAACTGTGTTAACA GTCGCTGGCCAAAATATTG CTTATTTTATTGTTGTACTATATTAA ] [+] EMBL AU057210 [ TTTT GAGAAGCGAGCGCCTGCCCTCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTCTTTTTAaaaa ] [-] EMBL AU160918 [ TCCTT GACAATCTT GTCCAAGCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGAAA ] [+] EMBL CB665798 [ CTTCA CAAGTTTGTTGGGTACGAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAAGGAATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCCCATACTGCAGAGGCGTCTTAATCACGTGGCCATTTGATATTTTGATT AGAC GGAACTGTGTTAACATGTCGCT GCCAACATATTGCCTTA TTTA TGTTGTAATATATAAAGAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGATGATGATTGTGAACTGTATTAGAAAATAAATACAGGA ] consensusID : consensus_14600#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [TCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCAGGAGGGATCTTGAAGGCCATCTTTGCAAGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTTGCTTCTTGAACTTGAACACGGAGTTAAGTAGGCCTTGACAATGCTNGATTTTTTTTTTGTTGAATCAAGACAAGGGGATTTTGTATTACTTAAGGGGGNTTTTTTGGGGGGAAGGTTATNGACAAAAGGTTAATTTTTTGGGGA] [+] EMBL OSC823 [TCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCACTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGCGTGCACAAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACATCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCGATCCGCGACCTTCCAGGAGGGATCTTGAAGGCCATCTTTGCAAGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTTGCTTCTTGAACTTGAACACGGAGTTAAGTAGGCCTTGACAATGCTNGATTTTTTTTTTGTTGAATCAAGACAAGGGGATTTTGTATTACTTAAGGGGGNTTTTTTGGGGGGAAGGTTATNGACAAAAGGTTAATTTTTTGGGGA] consensusID : consensus_14600#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [GGAGGGGGCGGCGAGGTGGAGGAGGAGGAGCGCGGTGAGGAAGATGGGCCAGACGAAGAGCGTGTGGATGAAGACGTTGACGGCGTTGCTGTGGTACGCGCCGTAGAAGGCGAAGTGGTGCTCCAGGTCGAGGAGGCCGCCGCCGCTAGGCTTCGCCATGGCTGCGTGTGTTCGGGGGGAAGTGTATGACATAGCTACTTGTGGAGATATAGTTGTAACCATAGGTAGCATGTAAATACTATTTAGAAAATAGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU082960 [GGAGGGGGCGGCGAGGTGGAGGAGGAGGAGCGCGGTGAGGAAGATGGGCCAGACGAAGAGCGTGTGGATGAAGACGTTGACGGCGTTGCTGTGGTACGCGCCGTAGAAGGCGAAGTGGTGCTCCAGGTCGAGGAGGCCGCCGCCGCTAGGCTTCGCCATGGCTGCGTGTGTTCGGGGGGAAGTGTATGACATAGCTACTTGTGGAGATATAGTTGTAACCATAGGTAGCATGTAAATACTATTTAGAAAATAGCTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14600#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [TTTTTTTTTTTAAAAAGACTTTCCTGTATTTATTTTCTAATACAGTTCACAATCATCATCAGAATTCTATATTCTCCAGTAACGTATACACATCAGACAAGAGAGTGCATAAAACTCTTTATATATTACAACATAAATAAGGCAATATGTTGGCAGCGACATGTTAACACAGTTCCGTCTAATCAAAATATCAAATGGCCACGTGATTAAGACGCCTCTGCAGTATGGGGGTTGCCAACTTCCAAATCACACTTCACGTCATCTTCTTCGNTTTCTTGTCCTCCCATTTCCTGCGGGGCCTCGTCAATCAGNTTCTTGCACTTTTGGNGTGAAAGCCAGGTTANGGTTCGT] [-] EMBL AU033162 [TTTTTTTTTTTAAAAAGACTTTCCTGTATTTATTTTCTAATACAGTTCACAATCATCATCAGAATTCTATATTCTCCAGTAACGTATACACATCAGACAAGAGAGTGCATAAAACTCTTTATATATTACAACATAAATAAGGCAATATGTTGGCAGCGACATGTTAACACAGTTCCGTCTAATCAAAATATCAAATGGCCACGTGATTAAGACGCCTCTGCAGTATGGGGGTTGCCAACTTCCAAATCACACTTCACGTCATCTTCTTCGNTTTCTTGTCCTCCCATTTCCTGCGGGGCCTCGTCAATCAGNTTCTTGCACTTTTGGNGTGAAAGCCAGGTTANGGTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14600#0 CCTCCTCCCTCCTACAACCCCAATCCCCCTTCTTCTTCTTCTTCTTGTACTTGTTGTTCT 60 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 ------------------------------------------------------------ consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 TGCTCTTGTTCCAGTGTTGCAGCAGCAGCAGCAGCAGCGGAGGCGCAAGAAGACGAGCTA 120 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 ------------------------------------------------------------ consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 GAGAGAGAGAATCAGAGGAGAGCTTGGGTGAGATGGGTGAGTGCAGAGGAGGAGGAGGAG 180 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 ------------------------------------------------------------ consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 GAGGAGATGGGCTGATCAAGCTGTTCGGGAAGACGATCCCGGTGCAGCCGGATGCCAAGG 240 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 ------------------------------------------------------------ consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 ATGTTCAGCAGCATAGTGGCAGTAGCAGCAGCTCAACCGAATCCGACGTCCAAGAAACCG 300 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 ---------------------------------------------------------CCC 3 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 CCGCTGTCGCCGTCGCCGACCCCTCCCCGCGGTCGGAGGTCGTCGACGGCGAGAGCCCGC 360 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 CCGGCCAAATTGAAACTCTTGTCGTCCTCACCTGGAAGGAACCCCCCGAACACACGCAGC 63 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 CGCAGCCGGGCGGCGAGGCGGCGAGCCATCAGCAGCAGCAGAAGGAGATGAAGCTGAAGA 420 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 CATGGCGAAGCCTAGCGGCGGCGGCCTCCTCGACCTGGAGCACCACTTCGCCTTCTACGG 123 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 AGCCGGACAAGATCCTGCCATGCCCGCGGTGCAGCAGCATGGACACCAAGTTCTGCTACT 480 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 CGCGTACCACAGCAACGCCGTCAACGT-------CTTCATCCACACGCTCTTCGTCTGGC 176 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 TCAACAACTACAACGTCAACCAGCCTCGCCACTTCTGCAAGCACTGCCAGCGCTACTGGA 540 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 CCATCTTCCTCACCGCGCTCCTCCTCCTCCACCTCGCCGCCCCCTCCGCGCACGCCGCGG 236 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 CCGCCGGCGGCGCCATGCGCAACGTCCCCGTCGGCGCCGGCGTACTGGGGCTGCATGATT 600 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 CCGCCGGCGCCGCCGTCTACGGGGCCTTCTACCTCCTCCTCGACCGCCGCGCCGGCGCCC 296 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 CCACCTCCTGGAGCTTGGAGCCTCCCATGGCCGGCCACAGTCCAGTCTCAGGCCATCTCA 660 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 TCGCCGCGCTCCTCTGCTTCCTCTGCTGGGCCGCCAGCGCCGCCCTCGCCGCCCGCCTCG 356 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 TCATCATCACCACCTACAAGTGCTACACCTTCAGTCTCCTCCTTCACACTAGGCAAGCAT 720 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 GCTTCTCCGCCGGATGGAAG-GTGGTATTGGTAGCTCAGCTGTTCTGTTGGACTATGCAG 415 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 CCCAGAGAGGGTGGTGATCATGAGGCAAGAGATCACCATGGCAATGGTAAA---GTGTGG 777 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 TTCATTGGCCATGGTGTTTTTGAGAAGCGAGCGCCTGCCCTCCTTGACAATCTTGTCCAA 475 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 GTGCCGAAGACGATCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCA 837 consensus_14600#2 -------------TCCGGATCGACAACGCCGACGAGGTTGCCCGGAGCTCAATCCGGTCA 47 consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 GCTTTCTTGATGGCTCCATTCTTCGTGCTACTAGAGGCTCTTCACAAGTTTGTTGGGTAC 535 consensus_14600#4 -------------------------------TTTTTTTTTTTAAAAAGACTTTCCTGTAT 29 consensus_14600#0 CTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGC 897 consensus_14600#2 CTCTTCGCCTTCAGAGGCGGCGACAAGGCGGATGATAACAACGACGACGATGGCACCGGC 107 consensus_14600#3 ------------GGAGGGGGCGGCGAGGTGGAGGAGGAGGAGCGCGGTGAGGAAGATGGG 48 consensus_14600#1 GAACCGTATCCTGGCTTTCACGCCAAAGTGCAGAAGCTGATTGACGAGGCCCGCAA-GGA 594 consensus_14600#4 TTATTTTCTAATACAGTTCACAATCATCATCAGAATTCTATATTCTCCAGTAACGTATAC 89 * * * * * consensus_14600#0 GTGCAC-AAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACA 956 consensus_14600#2 GTGCAC-AAGCTCGCCACCACGGTGTTCGAGCCAAAGAGGGACAGCAAGACGGCGAAACA 166 consensus_14600#3 CCAGACGAAGAGCGTGTGGATGAAGACGTTGACGGCGTTGCTGTGGTACGCGCCGTAGAA 108 consensus_14600#1 ATGGGAGGACAAGAAAGCGAAGAAGATGACGTGAAGTGTGATTTGGAAGTTGGCAACCCC 654 consensus_14600#4 ACATCAGACAAGAGAGTGCATAAAACTCTTTATATATTACAACATAAATAAGGCAATATG 149 * * * * consensus_14600#0 TCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCG-ATCCG 1015 consensus_14600#2 TCCGGCGATCACGAGCTTGCCGCTCTTGCACACCAACCCCGTCGCGCTTACCCG-ATCCG 225 consensus_14600#3 ---GGCGAAGTGGTGCTC-CAGGTCGAGGAGGCCGCCGCCGCTAGGCTTCGCCATGGCTG 164 consensus_14600#1 CATACTGCAGAGGCGTCT--TAATCACGTGGCCATTTGATATTTTGATTAGACGGAACTG 712 consensus_14600#4 T-TGGCAGCGACATGTTA-------ACACAGTTCCGTCTAATCAAAATATCAAATGGCCA 201 * * * consensus_14600#0 CGACCTTCCAGGAGGGATCTTGAAGGCCATCTT-GCAAGATTTTTTTTTTTTTGCCTTCA 1074 consensus_14600#2 CGACCTTCCAGGAGGGATCTTGAAGGCCATCTTTGCAAGATTTTTTTTTTTTTGCCTTCA 285 consensus_14600#3 CGTGTGTTCGGGGGGAAG--TGTATGACAT-------AGCTACTTGTGGAGATATAGTTG 215 consensus_14600#1 TGTTAACATGTCGCTGCCAACATATTGCCT--------TATTTATGTTGTAATATATAAA 764 consensus_14600#4 CGTGATTAAGACGCCTCTGCAGTATGGGGGTTG---CCAACTTCCAAATCACACTTCACG 258 * * consensus_14600#0 TCCTCTCTGCT-GCTTCT-GAACT-GAACACGAAGTTA--GTAG--CCTGACAGTGCTG- 1126 consensus_14600#2 TCCTCTCTGCTTGCTTCTTGAACTTGAACACGGAGTTAA-GTAGGCCTTGACAATGCTNG 344 consensus_14600#3 TAACCATAGGTAGCATGT-AAATACTATTTAGAAAATA--GCTG--TTTAAAAAAAAAAA 270 consensus_14600#1 GAGTTTTATGCACTCTCTTGTCTGATGTGTATACGTTACTGGAGAATATAGAATTCTGAT 824 consensus_14600#4 TCATCTTCTTCGNTTTCTTGTCCTCCCATTTCCTGCGGG-GCCTCGTCAATCAGNTTCTT 317 * * * * consensus_14600#0 ATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGTGTATGA 1186 consensus_14600#2 ATTTTTTTTTTGTTGAATCAAGACAAGGGGATTTT-GTATTACTTAAGGGGGNTTTTTTG 403 consensus_14600#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANGAAAAAA 330 consensus_14600#1 GATGATTGTGAACTGTATTAGAAAATAAATACAGGAAAGTCTTTTTACGGTGGTCTCTTC 884 consensus_14600#4 GCACTTTTGGNGTGAAAGCCAGGTTANGGTTCGT-------------------------- 351 consensus_14600#0 CATAGCTACTTGTGGAGATATAGTTGTAACCATAGGTAGCATGTAAATACTATTTAGAAA 1246 consensus_14600#2 GGGGGAAGGTTATNGACAAAAGGTTAATTTTTTGGGGA---------------------- 441 consensus_14600#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------- 369 consensus_14600#1 TGTACTGGTACTCTACTATA-AGCTGGAAAAATATA------------------------ 919 consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 ATAGCTGTTTAAATGGATATAGCTAGTATTTGGGTTTGGAGCCAGGAGATAAGTAAGGCC 1306 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 ------------------------------------------------------------ consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 CCTGGTTTTGTAGATAAATAAGAATCAATTAGATGGAATATATGGCTTGAGGTATTTCAT 1366 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 ------------------------------------------------------------ consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 TTCTTCAGCAATCTGTTGTAATATTGTTGCAAGCTTCAGTCTGAAGAATAGTTTCAGTGT 1426 consensus_14600#2 ------------------------------------------------------------ consensus_14600#3 ------------------------------------------------------------ consensus_14600#1 ------------------------------------------------------------ consensus_14600#4 ------------------------------------------------------------ consensus_14600#0 GCAACTAATTGCACCATAAAAAAAAA 1452 consensus_14600#2 -------------------------- consensus_14600#3 -------------------------- consensus_14600#1 -------------------------- consensus_14600#4 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||