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Oryza sativa
cluster # 14602 cluster # 14602       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14602#0 length = 1222 sequences # 15  
consensus_14602#1 length = 360 sequences # 1  
consensus_14602#2 length = 358 sequences # 1  

consensusID : consensus_14602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1222
fasta sequence
                              [TTCCTCGAGCACTGTTGGCCTACTGGAAAATGCAGAAATCAGATTGTCTGACCCTTTACAATACCAATCAATCGTCGATGCTGAATGGAATATCATTTATGACAAGTTGGATAAATGTGTCAAAAGTGGGGCAAAGATAGTCCTTTCTCGGTTGGCAATTGGTGATCTTGCAACACAGTATTTTGCAGACCGGGACATTTTCTGTGCTGGCCGTGTTGCAGAAGAGGATTTACAACGTGTTGCAGCAGCAACAGGTGGTACCGTTCAGACATCAGTGAATAATGTCATTGATGAGGTACTTGGTACTTGCGAAGTTTTCGAGGAAAGGCAAGTNGGCAATGAACGGTTCAATATATTTAGTGGTTGCCCTTCTGGTCAAACAGCAACCATAGTCCTTCGTGGTGGTGCAGATCAGTTCATCGA-GGAAGCAGAAAGGAGCCTCCACGATGCCATCATGATTGTTAGAAGAGCTCTTAAGAACTCAACAGTTGTACCTGGTGGTGGTGCTATTGATATGGAAAT-AAGCAAGTACCTCAGACAGCATG-CACGTACCATAGCTGGGAAGTCTCAATTCTTCGT-AAACTCATTTGCTAAAGCCCTCGAGGTTATT-CCAAGACAACTTTGTGACAATGCTGGATTTGATGCAACTGATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACACTGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAATGCTATAAATGCTGCAACTG-AAGCTGC-TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG-GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC-AATCTACG-CCACGTTTG-TTTAGCTTCGTC-GC-TC--GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA-TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG-TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAAAAAAAAAAAAAAAAAAGGCCACAT]

[+] EMBL AK109357             [TTCCTCGAGCACTGTTGGCCTACTGGAAAATGCAGAAATCAGATTGTCTGACCCTTTACAATACCAATCAATCGTCGATGCTGAATGGAATATCATTTATGACAAGTTGGATAAATGTGTCAAAAGTGGGGCAAAGATAGTCCTTTCTCGGTTGGCAATTGGTGATCTTGCAACACAGTATTTTGCAGACCGGGACATTTTCTGTGCTGGCCGTGTTGCAGAAGAGGATTTACAACGTGTTGCAGCAGCAACAGGTGGTACCGTTCAGACATCAGTGAATAATGTCATTGATGAGGTACTTGGTACTTGCGAAGTTTTCGAGGAAAGGCAAGTGGGCAATGAACGGTTCAATATATTTAGTGGTTGCCCTTCTGGTCAAACAGCAACCATAGTCCTTCGTGGTGGTGCAGATCAGTTCATCGA GGAAGCAGAAAGGAGCCTCCACGATGCCATCATGATTGTTAGAAGAGCTCTTAAGAACTCAACAGTTGTACCTGGTGGTGGTGCTATTGATATGGAAAT AAGCAAGTACCTCAGACAGCATG CACGTACCATAGCTGGGAAGTCTCAATTCTTCGT AAACTCATTTGCTAAAGCCCTCGAGGTTATT CCAAGACAACTTTGTGACAATGCTGGATTTGATGCAACTGATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACACTGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL C26673               [                          AAAATGCAGAAATCAGATTGTCTGACCCTTTACAATACCAATCAATCGTCGATGCTGAATGGAATATCATTTATGACAAGTTGGATAAATGTGTCAAAAGTGGGGCAAAGATAGTCCTTTCTCGGTTGGCAATTGGTGATCTTGCAACACAGTATTTTGCAGACCGGGACATTTTCTGTGCTGGCCGTGTTGCAGAAGAGGATTTACAACGTGTTGCAGCAGCAACAGGTGGTACCGTTCAGACATCAGTGAATAATGTCATTGATGAGGTACTTGGTACTTGCGAAGTTTTCGAGGAAAGGCAAGTNGGCAATGAACGGTTCA  ATATTTAGTGGTTGCCCTTCTGGTCAAACAGCAACCATAGTCCTTCGTGGTGGTGCAGATCAGTTCATCGG GGAAGCAGNAAGGAGCCTCCACGGTGCCATCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSC109751            [                                                                                               TTTATGACAAGTTGGATAAATGTGTCAAAAGTGGGGCAAAGATAGTCCTTTCTCGGTTGGCAATTGGTGATCTTGCAACACAGTATTTTGCAGACCGGGACATTTTCTGTGCTGGCCGTGTTGCAGAAGAGGATTTACAACGTGTTGCAGCAGCAACAGGTGGTACCGTTCAGACATCAGTGAATAATGTCATTGATGAGGTACTTGGTACTTGCGAAGTTTTCGAGGAAAGGCAAGTNGGCAATGAACGGTTCAATATATTTAGTGGTTGCCCTTCTGGTCAAACAGCAACCATAGTCCTTCGTGGTGGTGCAGATCAGTTCATCGAGGGAAGCAG AAGGAGCCTCCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU093991             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               gGATATGGAAATAAAGCAAGTACCTCAGACAGCATGCCACGTACCATAGCTGGNAAGTCTCAATTCTTCGTAAAACTCATTTGCTAAAGCCCTCGAGGTTATTCCCAAGACAACTTTGTGACAATGCTGGATTTGATGCAACTGATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACACTGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAA                        ]
[+] EMBL AU100726             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATC CACGTACCATAGCTGGGAAATCTCAATTCTTCGT AAACTCATTTGCTAAA CCCTCGAGGTTATN CCAAGACAACTTTGTGACAATGCTGGATTTGATGCAACTGATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACACTGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATC  CAAAAAAA                      ]
[+] EMBL AU056200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TAGCTGGGAAGTCTCAATTCTTCGT AAACTCATTTGCTAAAGCCCTCGAGGTTATC CCAAGACAACTTTGTGACAATGCTGGATTTGATGCAACTGATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACACTGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAAAAAAAAAAA               ]
[-] EMBL CF306105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAACTTTGTGACAATGCTGGATTTGATGCAACTGATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACACTGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAAAAATAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGAAAAACTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCGATGGGTATTC                                         ]
[+] EMBL OS2014A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACTTTGTGACAATGCTGGNTTTGATGCAACTGATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGNCATCAACACTGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGNTCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGNTGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGNTGCGGCTGCTAGCGCGNTGGCTGGCCGTGGCGGNGGNGCGATGCGGTGGCCGTCGTGGCAGGGGCATca                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU092141             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GATGTACTCAATAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACACCAACACTGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAAAAAAAAAAAAA             ]
[+] EMBL AU222813             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGTTGTGAAGATCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATNTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAAAAAAA                   ]
[-] EMBL CF305829             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGTTGTGAAGATCAATGCTATAAATGCTGCAACTG AAGCTGC TTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTC                                         ]
[+] EMBL BI799773             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               aAACTGAAAGCTGCTTTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGCCCGTGGCGGAGGAGCAATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATCAAATCTACG CCACG TTG TTAAGCTTCGTCAGCATCGTGTGTGGTTCAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGGTTTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTaaaaaaa                             ]
[+] EMBL AU092371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGCTGNCCGTGGCGGAGGAGCGATGCGG GGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTA TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAAAAAAAAAAAA              ]
[+] EMBL AU033006             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 anCGATGCGG GCCCNTGGTGGAAGGGGCATGAGGAGGCGGTAATC AATCTACGCCCACGTTTGNTTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTATTTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGG TTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAAAAAAAAAAAAA             ]
[+] EMBL CA764218             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GGCGGTAATC AATCTACG CCACGTTTG TTTAGCTTCGTC GC TC  GTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTCTGCTCTTTATCGAAGTTTTTCCTGACGCTACATGCATGCCCTGCTCGATGTA TTCCCAATTGTGCTTGTCAGGTTCGTGAAAACATGGCAAATATTTTTGTGATGGTTTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAA                           ]


>consensus_14602#0 TTCCTCGAGCACTGTTGGCCTACTGGAAAATGCAGAAATCAGATTGTCTGACCCTTTACA ATACCAATCAATCGTCGATGCTGAATGGAATATCATTTATGACAAGTTGGATAAATGTGT CAAAAGTGGGGCAAAGATAGTCCTTTCTCGGTTGGCAATTGGTGATCTTGCAACACAGTA TTTTGCAGACCGGGACATTTTCTGTGCTGGCCGTGTTGCAGAAGAGGATTTACAACGTGT TGCAGCAGCAACAGGTGGTACCGTTCAGACATCAGTGAATAATGTCATTGATGAGGTACT TGGTACTTGCGAAGTTTTCGAGGAAAGGCAAGTNGGCAATGAACGGTTCAATATATTTAG TGGTTGCCCTTCTGGTCAAACAGCAACCATAGTCCTTCGTGGTGGTGCAGATCAGTTCAT CGAGGAAGCAGAAAGGAGCCTCCACGATGCCATCATGATTGTTAGAAGAGCTCTTAAGAA CTCAACAGTTGTACCTGGTGGTGGTGCTATTGATATGGAAATAAGCAAGTACCTCAGACA GCATGCACGTACCATAGCTGGGAAGTCTCAATTCTTCGTAAACTCATTTGCTAAAGCCCT CGAGGTTATTCCAAGACAACTTTGTGACAATGCTGGATTTGATGCAACTGATGTACTCAA TAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACAC TGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAA TGCTATAAATGCTGCAACTGAAGCTGCTTGCCTTATTCTCAGCGTGGATGAGACAGTTAA AAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCGCGATGGCTGGCCGTGG CGGAGGAGCGATGCGGGGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATCAATCTACGC CACGTTTGTTTAGCTTCGTCGCTCGTGTGGTTTAAATTTAGGAGTAGGTTATTTGCAGTC TGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCGATGTATTTCCAAT TGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGGTTGCCTACTAGCTT TTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCCTCAAAAAAA AAAAAAAAAAAAAAGGCCACAT



consensusID : consensus_14602#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence
                              [TGCTTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAATCCCAAGGTCTGAAAGTGCCCAAGTTGATCCGCTGTCTAGCCGATGCTGCCGTGCGGAGGACCAATGCGGGCCGTGTTGGAAGGGCATGAGGAGCCGGTAATCAAATCTACGCCACGTTGTTAAGCTTCGTCGCTCGTGTGTGGTTCAAATTTAGGAGTAGGTTATTCCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCAGATGTATTTCCCATTGTGCTTGTCAGATTCGTGAAAACATGCAAATATTTTTGTGATGGTTTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAA]

[+] EMBL BI808604             [TGCTTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAATCCCAAGGTCTGAAAGTGCCCAAGTTGATCCGCTGTCTAGCCGATGCTGCCGTGCGGAGGACCAATGCGGGCCGTGTTGGAAGGGCATGAGGAGCCGGTAATCAAATCTACGCCACGTTGTTAAGCTTCGTCGCTCGTGTGTGGTTCAAATTTAGGAGTAGGTTATTCCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCAGATGTATTTCCCATTGTGCTTGTCAGATTCGTGAAAACATGCAAATATTTTTGTGATGGTTTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAA]


>consensus_14602#1 TGCTTGCCTTATTCTCAGCGTGGATGAGACAGTTAAAATCCCAAGGTCTGAAAGTGCCCA AGTTGATCCGCTGTCTAGCCGATGCTGCCGTGCGGAGGACCAATGCGGGCCGTGTTGGAA GGGCATGAGGAGCCGGTAATCAAATCTACGCCACGTTGTTAAGCTTCGTCGCTCGTGTGT GGTTCAAATTTAGGAGTAGGTTATTCCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCT ACATGCATGCCCTGCTCAGATGTATTTCCCATTGTGCTTGTCAGATTCGTGAAAACATGC AAATATTTTTGTGATGGTTTGCCTACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAA



consensusID : consensus_14602#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence
                              [CATCAAAGTTGATAGGTGGCGAGAAAGAATTTTTTGCATCTATGGTTGTGGATGCTGTTCTTGCCATTAGCAATGATGACAGACTTAACCTTCTTGGAATAAAAAAGGTTCCTGGAGGCACCATGAGAGATTCCTTCCTTGTTAACGGTGTTGCCTTCAAGAAGACATTTTCCTATGCTGGATTTGAGCAACAGCCAAAGAAGTTCTTGAGTCCAAAGATTCTTTTGCTGAACATAGAACTAGAATTGAAATCTGAGAAAGAAAATGCAGAAATCAGATTGTCTGACCCTTTACAATACCAATCAATCGTCGATGCTGAATGGAATATCATTTATGACAAGTTGGATAAATTGTGTCA]

[+] EMBL OSC25171             [CATCAAAGTTGATAGGTGGCGAGAAAGAATTTTTTGCATCTATGGTTGTGGATGCTGTTCTTGCCATTAGCAATGATGACAGACTTAACCTTCTTGGAATAAAAAAGGTTCCTGGAGGCACCATGAGAGATTCCTTCCTTGTTAACGGTGTTGCCTTCAAGAAGACATTTTCCTATGCTGGATTTGAGCAACAGCCAAAGAAGTTCTTGAGTCCAAAGATTCTTTTGCTGAACATAGAACTAGAATTGAAATCTGAGAAAGAAAATGCAGAAATCAGATTGTCTGACCCTTTACAATACCAATCAATCGTCGATGCTGAATGGAATATCATTTATGACAAGTTGGATAAATTGTGTCA]


>consensus_14602#2 CATCAAAGTTGATAGGTGGCGAGAAAGAATTTTTTGCATCTATGGTTGTGGATGCTGTTC TTGCCATTAGCAATGATGACAGACTTAACCTTCTTGGAATAAAAAAGGTTCCTGGAGGCA CCATGAGAGATTCCTTCCTTGTTAACGGTGTTGCCTTCAAGAAGACATTTTCCTATGCTG GATTTGAGCAACAGCCAAAGAAGTTCTTGAGTCCAAAGATTCTTTTGCTGAACATAGAAC TAGAATTGAAATCTGAGAAAGAAAATGCAGAAATCAGATTGTCTGACCCTTTACAATACC AATCAATCGTCGATGCTGAATGGAATATCATTTATGACAAGTTGGATAAATTGTGTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14602#0      TTCCTCGAGCACTGTTGGCCTACTGGAAAATGCAGAAATCAGATTGTCTGACCCTTTACA 60
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      ATACCAATCAATCGTCGATGCTGAATGGAATATCATTTATGACAAGTTGGATAAATGTGT 120
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      CAAAAGTGGGGCAAAGATAGTCCTTTCTCGGTTGGCAATTGGTGATCTTGCAACACAGTA 180
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      TTTTGCAGACCGGGACATTTTCTGTGCTGGCCGTGTTGCAGAAGAGGATTTACAACGTGT 240
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      TGCAGCAGCAACAGGTGGTACCGTTCAGACATCAGTGAATAATGTCATTGATGAGGTACT 300
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      TGGTACTTGCGAAGTTTTCGAGGAAAGGCAAGTNGGCAATGAACGGTTCAATATATTTAG 360
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      TGGTTGCCCTTCTGGTCAAACAGCAACCATAGTCCTTCGTGGTGGTGCAGATCAGTTCAT 420
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      CGAGGAAGCAGAAAGGAGCCTCCACGATGCCATCATGATTGTTAGAAGAGCTCTTAAGAA 480
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      CTCAACAGTTGTACCTGGTGGTGGTGCTATTGATATGGAAATAAGCAAGTACCTCAGACA 540
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      GCATGCACGTACCATAGCTGGGAAGTCTCAATTCTTCGTAAACTCATTTGCTAAAGCCCT 600
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      CGAGGTTATTCCAAGACAACTTTGTGACAATGCTGGATTTGATGCAACTGATGTACTCAA 660
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      TAAGCTCCGACAGAAACATGCATCTGGTGAAGGTGCTAATTTTGGTGTGGACATCAACAC 720
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      TGGTGGAATTGCTGATTCCTTTGCTAACTTTGTCTGGGAACCTGCTGTTGTGAAGATCAA 780
consensus_14602#1      ------------------------------------------------------------
consensus_14602#2      ------------------------------------------------------------
                                                                                   

consensus_14602#0      TGCTATAAATGCTGCAACTGAAGCTGCTTGCCTTATTCTCAGCGTG-GATGAGACAGTTA 839
consensus_14602#1      ------------------------TGCTTGCCTTATTCTCAGCGTG-GATGAGACAGTTA 35
consensus_14602#2      ------------------------------CATCAAAGTTGATAGGTGGCGAGAAAG--- 27
                                                     * * *   *      * *  **** **   

consensus_14602#0      AAAATCCCAAGTCTGAAAGTGCGCAAGGTGATGCGGCTGCTAGCG-CGATGGCTGGCCGT 898
consensus_14602#1      AAATCCCAAGGTCTGAAAGTGCCCAAGTTGATCCGCTGTCTAGC--CGATGCT--GCCGT 91
consensus_14602#2      AATTTTTTGCATCTATGGTTGTGGATGCTGTTCTTGCCATTAGCAATGATGAC-AGACTT 86
                       **         ***     **   * * ** *        ****   ****    * * *

consensus_14602#0      GGCGGAGGAGCGATGCGGGGCCGTGGTGGAAGGGGCATGAGGAGGCGGTAATCAA-T--C 955
consensus_14602#1      G-CGGAGGACCAATGCGGG-CCGTGTTGGAAGGG-CATGAGGAGCCGGTAATCAAAT--C 146
consensus_14602#2      AACCTTCTTGGAATAAAAAAGGTTCCTGGAGGCACCATGAGAGATTCCTTCCTTGTTAAC 146
                         *         **         *  **** *   ******       *       *  *

consensus_14602#0      TACGCCACGTTTGTTTAGCTTCGTCGCTCGTGTG--GTTTAAATTTAGGAGTAGGTTATT 1013
consensus_14602#1      TACGCCACGTT-GTTAAGCTTCGTCGCTCGTGTGTGGTTCAAATTTAGGAGTAGGTTATT 205
consensus_14602#2      GGTGTTGCCTTCAAGAAGACATTTTCCTATGCTGGATTTGAGCAACAGCCAAAGAAGTTC 206
                          *   * **     **     *  **    **   ** *     **    **    * 

consensus_14602#0      TGCAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTC-GATGTA 1072
consensus_14602#1      C-CAGTCTGCTCTTTATCGAAGTTTTTCGTGACGCTACATGCATGCCCTGCTCAGATGTA 264
consensus_14602#2      TTGAGTCCAAAGATTCTTTT-GCTGAACATAGAACTAGAATTGAAATCTGAGAAAGAAAA 265
                          ****      ** *    * *   * *    *** *        ***         *

consensus_14602#0      TTTCCAATTGTGCTTGTCAGATTCGTGAAAACATGGCAAATATTTTTGTGATGGTT-GCC 1131
consensus_14602#1      TTTCCCATTGTGCTTGTCAGATTCGTGAAAACATG-CAAATATTTTTGTGATGGTTTGCC 323
consensus_14602#2      TGCAGAAATCAGATTGTCTGACCCTTTACAATAC--CAATCAATCGT-CGATGCTGAATG 322
                       *     * *  * ***** **  * * * ** *   ***  * *  *  **** *     

consensus_14602#0      TACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAATCAATGGGTATTCTTCTTGATCC 1191
consensus_14602#1      TACTAGCTTTTGTAACTTCACATGTTGACTGTTTCAA----------------------- 360
consensus_14602#2      GAATATCATTTATGACAAGTTGGATAAATTGTGTCA------------------------ 358
                        * ** * *** * **        *  * *** ***                        

consensus_14602#0      TCAAAAAAAAAAAAAAAAAAAAAGGCCACAT 1222
consensus_14602#1      -------------------------------
consensus_14602#2      -------------------------------
                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)