These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1057 fasta sequence [ATCCATCCCCAACGCCATGGCCTCCACGCTCGCCTGGAGCTCCGCCGCCTCCTCCTCCGCCCCCTCCTCCCGCCTCCCGCCGCGCCGCTCCCCGTCGCTGGTCGTCGTCGCCCAGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG-AAAGGGGACACGCTT-AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG-CAAGGCAAC-GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT-GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA-GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT-GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT-ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC-TTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCATATAGTTTGATAGAGCTACTACAATATTT-GGGTTGGGTGGGCC-AAATGGC-CGT-GGCAGTCTGGTGGTCGTAGGTTGGGCCG-TTGGTCGCTGTATTATTAGGCCCAAACATAGGGATTTCAACACATTTTTTAATGAAAACTTTCATCTGAAAAAACCTTCGTTTGGAAAAAAA] [+] EMBL AK071751 [ATCCATCCCCAACGCCATGGCCTCCACGCTCGCCTGGAGCTCCGCCGCCTCCTCCTCCGCCCCCTCCTCCCGCCTCCCGCCGCGCCGCTCCCCGTCGCTGGTCGTCGTCGCCCAGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG AAAGGGGACACGCTT AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTT ] [+] EMBL AK104610 [ ATCCCCAACGCCATGGCCTCCACGCTCGCCTGGAGCTCCGCCGCCTCCTCCTCCGCCCCCTCCTCCCGCCTCCCGCCGCGCCGCTCCCCGTCGCTGGTCGTCGTCGCCCAGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG AAAGGGGACACGCTT AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTT ] [+] EMBL CF324797 [ ATCCCCAACGCCATGGCCTCCACGCTCGCCTGGAGCTCCGCCGCCTCCTCCTCCGCCCCCTCCTCCCGCCTCCCGCCGCGCCGCTCCCCGTCGCTGGTCGTCGTCGCCCAGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG AAAGGGGACACGCTT AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAG ] [+] EMBL AK058369 [ CCCAACGCCATGGCCTCCACGCTCGCCTGGAGCTCCGCCGCCTCCTCCTCCGCCCCCTCCTCCCGCCTCCCGCCGCGCCGCTCCCCGTCGCTGGTCGTCGTCGCCCAGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG AAAGGGGACACGCTT AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCAT ] [+] EMBL CF312951 [ CCCAACGCCATGGCCTCCACGCTCGCCTGGAGCTCCGCCGCCTCCTCCTCCGCCCCCTCCTCCCGCCTCCCGCCGCGCCGCTCCCCGTCGCTGGTCGTCGTCGCCCAGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG AAAGGGGACACGCTT AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAGGGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATCGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCT ] [+] EMBL AU096858 [ GCCATGGCCTCCACGCTCGCCTGGAGCTCCGCCGCCTCCTCCTCCGCCCCCTCCTCCCGCCTCCCGCCGCGCCGCTCCCCGTCGCTGGTCGTCGTCGCCCAGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG AAAGGGGACACGCTT AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACANGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAAGCACAGCAACTTGGCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAn ] [+] EMBL BF430686 [ CGCCTCCCGCCGCGCCGCTCCCCGTCCCTGGTCATCGTCGCCCAGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG AAAGGGGACACGCTC AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCCAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACA ] [+] EMBL CB000167 [ GCCGCGCCGCTCCCCGTCGCTGGTCGTCGTCGCCCTGGGCAAGGTCAAGAAGTATCGCCAGGTCATACTGACAGATGACATAGCAGAGGTGGGGAAG AAAGGGGACACGCTT AAAGTGAGGGCCGGGTTCTACCGCAACTTCCTTCTGCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGT ] [+] EMBL AU096859 [ AAGAAAAGGGGACACGCTTAAAAGTAAGGCCNGGGTTCTACNGCAATTTCCTTCTGCCAAAGGGCCAAGGCAACGGCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGANCAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAAaaaaa ] [+] EMBL AU174833 [ GCCAAAGGG CAAGGCAAC GCTGCTCACCCCAGAAGTACTCAAGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGT GTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGG ] [-] EMBL CF312952 [ GAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGGTAAAAGAAGAGGCACAGCAACTTGCCCGTGGTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAGCGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATA GGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATCGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCAaaaaa ] [+] EMBL AU174832 [ TGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCNCCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCATATAGTTTGATAGAGCTACTACAAaaaaa aaaa ] [+] EMBL OSS16391A [ TTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGGGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCATATAGTTTGATAGAGCTACTACAATATTT GGGTTGGGTGGGCCAAAATGGCACGT GGCAGTCTGGTGGTCGTAGGTTGGGCCG TTGGGCGCTGTNTTATTAGGC ] [+] EMBL OSS16382A [ TTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGGCTGACCGTATATGCGAAATAAGCCCTGAAGCTGCTTGATTGAATCTTTAGTGGATGGT GGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCATATAGGTTGATAGAGCTACTACAATATTTGGGGNTGGGTGGGCC AAATGGC CGT GGC ] [+] EMBL AU096856 [ TGGTNGGGCTTTGGATGAATTCTGATTTCACCAGAGATTTTTGCTGAAACTCCAAGGTGCAGTGTCACATCACGGGGCTTGGTCTTTACACATTGCCACTGTCCATCCTACCTGTAAAGTCAGTTTCTTGCACCTTTTTTTTTTTGACAAATTT ATTTGTGTTAATGTTATGGGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCATATAGTTTGATAGAGCTACTACAATATTT GGGTTNGGTGGGCCAAAATGGCACGTAGGCAGTCTGGTGGTCGTAGGTTGGGCCGCTTGGTCGCTGTATTATTAGGCCCAAACATAGGGATTTCAACACATTTTTTAATGAAAACTTTCATCTGAAAAAACCTTCGTTTGGAAAAAA ] [+] EMBL AU096854 [ AAATTTCATTTGTGTTAATGTTAT GGGTTAAATGGGCATGATGTAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTCNTTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCATATAGTTTGATAGAGCTACTACAATATTT GGGTTGGGTGGGCCAAAATGGCACGTAGGCAGTCTGGTGGTCGTAGGTTGGGCCGCTTGGTCGCTGTATTATTAGGCCCAAACATAGGGATTTCAACACATTTTTTAATGAAAACTTTCATCTGAAAAAACCTTCGTTTGGAAAAAAA] [+] EMBL AK060728 [ TAAACAACAAAGGGTTCAGAGTCTAGAGCAACTGATACTTGTC TTGTAATCTTGTTTAAAGGTGCACGTTCTTTATAGTCATATAGTTTGATAGAGCTACTACAATATTT GGGTTGGGTGGGCCAAAATGGCACGTAGGCAGTCTGGTGGTCGTAGGTTGGGCCGCTTGGTCGCTGTATTATTAGGCCCAAACATAGGGATTTCAACACATTTTTTAATGAAAACTTTCATCTGAAAAAAC ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||