These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 872 fasta sequence [AATTCGGCACGAGCTCACTAGAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC-GCGCCGTGTGCAACATG-AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA-CGTCGAACCCGACGACGAACCCGTC-GGCGGGC-TGC-TGC-TCGGCGCTGTCGCACGCCGACCTTAA-CTGCCTCTGCTCCTACAAGAACTCGCCG-TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC-TTGGGGTTTTTCT-TAAATATAAAAAGGATTATACAATAATTTTCAAATANATGAAGATCTGTGAAAAACACATCACGAGAAGACGCGGGGCGGGACCAGGGCGATCGGCACCCAATGAAGGCACATAACCCAACAATCGCCACAACACACAATATAGACG] [+] EMBL CA755908 [AATTCGGCACGAGCTCACTAGAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCT ] [+] EMBL AK105204 [ tttcataCTCACTAGAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC TTGGG ] [+] EMBL AU184837 [ GAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTNACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGNGGTGGCCGTCNCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGNGGCGA CGTNGAACCCGACGAC ] [+] EMBL AU164923 [ AGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGTGCTGGCTGTCCTCGTGGTGGCCGTCGCGGNGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATGNAGCAACGANGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAANCCGACGACGAACCCGTCGGGCGGGN TGC TGC TCGG ] [+] EMBL AU184599 [ GATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTG ] [+] EMBL AU198260 [ ATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTA ] [+] EMBL CF197362 [ ATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGNTCCTCACCNNNCCAGCAGCCGACGGCAATGGnnnnnnn ] [+] EMBL OSS15612A [ GCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGNCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTT GGCGGGCTTGCTTGCTTCGGCGCTGTCGCACGGCGACCTTAANTTGCCTCTGTTCCTACAAGAACTTGCCGTTGGTTNAGat ] [+] EMBL AU173847 [ GCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGTGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGNCAAGATTTGCA ] [+] EMBL OSC9441 [ CTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGAANTGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGC GNGGCGCTGCTGGCCGTGGCGCCG GCCGGCCCNGCGCTNGNTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCG GG NGCGGCGANCGTCGAACCCGACGACGAACCCGTC GGCGCNT NGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAG ] [+] EMBL BE040629 [ TCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAATTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCAAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAAAGGCTAGAACTGCTACAGGGATAGCCTAACTGAATGACAACTGTATGATCTTGACTCATGCTCGGGTAGAATGTGTATGTTCGTCTGTGAGAGGGTTATCATATGTGCGACGAAGGACCGAAATTAGTGCTTGTTGCATAGAAC AATGCCTAAT TACTTTGGAGTGTATCT TAAATATAAAAAGGATTATACAATAATTTTCAAATANATGAAGATCTGTGAAAAACACATCACGAGAAGACGCGGGGCGGGACCAGGGCGATCGGCACCCAATGAAGGCACATAACCCAACAATCGCCACAACACACAATATAGACG] [+] EMBL BI807282 [ tGCTGTCCTC T GT GCCCTC C GCGCTTTTTGTCCTGGC CCGGC CC GCCC GC CCGTGTGC ACATG AGCAACGACGAGTTCATGAAGTGCCAGCC GC GCGTCGGCGA CGTCGAACCCGACGACGAACCCGTC GCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACC TAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGC AC AAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC TTGGGGTTTTTCT AAAAaa ] [+] EMBL AU198208 [ TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC TTGGGGTTTTTCTATAAAaa ] [+] EMBL AU070814 [ GCATAAAATGGCTAGAACTGCNACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC TTGGGGTTTTTCT ATAAAAAAA ] consensusID : consensus_14615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 229 fasta sequence [GATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGAA-TGGCGAAGGNGG-TGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGNGGNGCTGCTGGCCGTGGCGCCGGCGNTGNACCGTGNGTTGTNTAACANGAGCANCGACGAGTTCATGAAGTGCCAGCCGNNGGCGGNC] [+] EMBL OSR3291A [GATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGAA TGGCGAAGGNGG TGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGNGGNGCTGCTGGCCGTGGCGCCGGCGNTGNACCGTGNGTTGTNTAACANGAGCANCGACGAGTTCATGAAGTGCCAGCCGNNGGCGGNC] [+] EMBL OSC9171 [ AGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGNAANTGGCGAAGGCGGCTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGC GNGG GCTGCTGGCCGTGG ] consensusID : consensus_14615#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence [GCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTNCTTGTTGCATTGATCGCATGCCTAATATACTTGGGGTTTNTCTATNATCCANAAA] [+] EMBL AU031525 [GCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTNCTTGTTGCATTGATCGCATGCCTAATATACTTGGGGTTTNTCTATNATCCANAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14615#0 AATTCGGCACGAGCTCACTAGAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATC 60 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 ACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATG 120 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 GCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTG 180 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 GCGCCGGCGCCGGCCCGCGCCGTGTGCAACATGAGCAACGACGAGTTCATGAAGTGCCAG 240 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 CCGGCGGCGGCGGCGACGTCGAACCCGACGACGAACCCGTCGGCGGGCTGCTGCTCGGCG 300 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 CTGTCGCACGCCGACCTTAACTGCCTCTGCTCCTACAAGAACTCGCCGTGGCTCAGCATC 360 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 TACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCG 420 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 GCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAA 480 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 GGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAAT 540 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ---------------------------------------GATAGCCACCAGCTAGCTAGC 21 consensus_14615#0 TAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATG 600 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 TCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCC 81 consensus_14615#0 TTCTTGTCTTATGCTTGTGTGGAATGTGTA--TGTTTGTCTGTGAGAGTGTTGTCATGTG 658 consensus_14615#2 ------------GCTTGTGTGGAATGTGTA--TGTTTGTCTGTGAGAGTGTTGTCATGTG 46 consensus_14615#1 AGCAGCCGACGGAATGGCGAAGGNGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGN 141 * * * * *** ** **** * * * *** * consensus_14615#0 TGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATACTTG-GG 717 consensus_14615#2 TGTGTGGTTGGCCGGTTAATAGTNCTTGTTGCATTGATCGCATGCCTAATATACTTG-GG 105 consensus_14615#1 GGNGCTGCTGGCCGTGGCGCCGGCGNTGNACCGTGNGTTGTNTAACANGAGCANCGACGA 201 * * * ****** * ** * * * * * * * * consensus_14615#0 GTTTTTCTTAAATATAAAAAGGATTATACAATAATTTTCAAATANATGAAGATCTGTGAA 777 consensus_14615#2 GTTTNTCTATNATCCANAAA---------------------------------------- 125 consensus_14615#1 GTTCATGAAGTGCCAGCCGNNGGCGGNC-------------------------------- 229 *** * consensus_14615#0 AAACACATCACGAGAAGACGCGGGGCGGGACCAGGGCGATCGGCACCCAATGAAGGCACA 837 consensus_14615#2 ------------------------------------------------------------ consensus_14615#1 ------------------------------------------------------------ consensus_14615#0 TAACCCAACAATCGCCACAACACACAATATAGACG 872 consensus_14615#2 ----------------------------------- consensus_14615#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||