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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 872 fasta sequence
[AATTCGGCACGAGCTCACTAGAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC-GCGCCGTGTGCAACATG-AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA-CGTCGAACCCGACGACGAACCCGTC-GGCGGGC-TGC-TGC-TCGGCGCTGTCGCACGCCGACCTTAA-CTGCCTCTGCTCCTACAAGAACTCGCCG-TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC-TTGGGGTTTTTCT-TAAATATAAAAAGGATTATACAATAATTTTCAAATANATGAAGATCTGTGAAAAACACATCACGAGAAGACGCGGGGCGGGACCAGGGCGATCGGCACCCAATGAAGGCACATAACCCAACAATCGCCACAACACACAATATAGACG]
[+] EMBL CA755908 [AATTCGGCACGAGCTCACTAGAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCT ]
[+] EMBL AK105204 [ tttcataCTCACTAGAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC TTGGG ]
[+] EMBL AU184837 [ GAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTNACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGNGGTGGCCGTCNCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGNGGCGA CGTNGAACCCGACGAC ]
[+] EMBL AU164923 [ AGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGTGCTGGCTGTCCTCGTGGTGGCCGTCGCGGNGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATGNAGCAACGANGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAANCCGACGACGAACCCGTCGGGCGGGN TGC TGC TCGG ]
[+] EMBL AU184599 [ GATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTG ]
[+] EMBL AU198260 [ ATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTA ]
[+] EMBL CF197362 [ ATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGNTCCTCACCNNNCCAGCAGCCGACGGCAATGGnnnnnnn ]
[+] EMBL OSS15612A [ GCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGNCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTT GGCGGGCTTGCTTGCTTCGGCGCTGTCGCACGGCGACCTTAANTTGCCTCTGTTCCTACAAGAACTTGCCGTTGGTTNAGat ]
[+] EMBL AU173847 [ GCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCGGCGGCGGTGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGNCAAGATTTGCA ]
[+] EMBL OSC9441 [ CTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGAANTGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGC GNGGCGCTGCTGGCCGTGGCGCCG GCCGGCCCNGCGCTNGNTGCAACATG AGCAACGACGAGTTCATGAAGTGCCAGCCG GG NGCGGCGANCGTCGAACCCGACGACGAACCCGTC GGCGCNT NGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAG ]
[+] EMBL BE040629 [ TCACCTCTCCAGCAGCCGACGGCAATGGCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTGGCGCCGGCGCCGGCCC GCGCCGTGTGCAACATG AGCAACGACGAGTTCATGAATTGCCAGCCGGCGGCGGCGGCGA CGTCGAACCCGACGACGAACCCGTC GGCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCAAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAAAGGCTAGAACTGCTACAGGGATAGCCTAACTGAATGACAACTGTATGATCTTGACTCATGCTCGGGTAGAATGTGTATGTTCGTCTGTGAGAGGGTTATCATATGTGCGACGAAGGACCGAAATTAGTGCTTGTTGCATAGAAC AATGCCTAAT TACTTTGGAGTGTATCT TAAATATAAAAAGGATTATACAATAATTTTCAAATANATGAAGATCTGTGAAAAACACATCACGAGAAGACGCGGGGCGGGACCAGGGCGATCGGCACCCAATGAAGGCACATAACCCAACAATCGCCACAACACACAATATAGACG]
[+] EMBL BI807282 [ tGCTGTCCTC T GT GCCCTC C GCGCTTTTTGTCCTGGC CCGGC CC GCCC GC CCGTGTGC ACATG AGCAACGACGAGTTCATGAAGTGCCAGCC GC GCGTCGGCGA CGTCGAACCCGACGACGAACCCGTC GCGGGC TGC TGC TCGGCGCTGTCGCACGCCGACC TAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGC AC AAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC TTGGGGTTTTTCT AAAAaa ]
[+] EMBL AU198208 [ TCGGCGCTGTCGCACGCCGACCTTAA CTGCCTCTGCTCCTACAAGAACTCGCCG TGGCTCAGCATCTACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCGGCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAAGGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAATTAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC TTGGGGTTTTTCTATAAAaa ]
[+] EMBL AU070814 [ GCATAAAATGGCTAGAACTGCNACAGGGATAGCCTAGCTGTATGACAACTGTATGTTCTTGTCTTATGCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATAC TTGGGGTTTTTCT ATAAAAAAA ]
consensusID : consensus_14615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 229 fasta sequence
[GATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGAA-TGGCGAAGGNGG-TGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGNGGNGCTGCTGGCCGTGGCGCCGGCGNTGNACCGTGNGTTGTNTAACANGAGCANCGACGAGTTCATGAAGTGCCAGCCGNNGGCGGNC]
[+] EMBL OSR3291A [GATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGAA TGGCGAAGGNGG TGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGNGGNGCTGCTGGCCGTGGCGCCGGCGNTGNACCGTGNGTTGTNTAACANGAGCANCGACGAGTTCATGAAGTGCCAGCCGNNGGCGGNC]
[+] EMBL OSC9171 [ AGCCACCAGCTAGCTAGCTCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGNAANTGGCGAAGGCGGCTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGC GNGG GCTGCTGGCCGTGG ]
consensusID : consensus_14615#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence
[GCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTNCTTGTTGCATTGATCGCATGCCTAATATACTTGGGGTTTNTCTATNATCCANAAA]
[+] EMBL AU031525 [GCTTGTGTGGAATGTGTATGTTTGTCTGTGAGAGTGTTGTCATGTGTGTGTGGTTGGCCGGTTAATAGTNCTTGTTGCATTGATCGCATGCCTAATATACTTGGGGTTTNTCTATNATCCANAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14615#0 AATTCGGCACGAGCTCACTAGAGATAGCCACCAGCTAGCTAGCTCCACCAGGTACCAATC 60
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 ACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCCAGCAGCCGACGGCAATG 120
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 GCGAAGGCGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGCGGCGCTGCTGGCCGTG 180
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 GCGCCGGCGCCGGCCCGCGCCGTGTGCAACATGAGCAACGACGAGTTCATGAAGTGCCAG 240
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 CCGGCGGCGGCGGCGACGTCGAACCCGACGACGAACCCGTCGGCGGGCTGCTGCTCGGCG 300
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 CTGTCGCACGCCGACCTTAACTGCCTCTGCTCCTACAAGAACTCGCCGTGGCTCAGCATC 360
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 TACAACATCGACCCCAACCGCGCCATGCAGCTGCCAGCCAAGTGTGGCCTCACCATGCCG 420
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 GCTAACTGCTAATAAGTTTGCTACTGTTTTACTGCCAAGATTTGCAGGCACTGCAACAAA 480
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 GGACATAACGTACGTAATATGTGTGCCTCCTACTCCTAGCTTGCGTTTGATATAGAAAAT 540
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ---------------------------------------GATAGCCACCAGCTAGCTAGC 21
consensus_14615#0 TAATAGCATAAAATGGCTAGAACTGCTACAGGGATAGCCTAGCTGTATGACAACTGTATG 600
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 TCCACCAGGTACCAATCACCTATAGTCACTAGCTAGCTCGATCCAGCTCCTCACCTCTCC 81
consensus_14615#0 TTCTTGTCTTATGCTTGTGTGGAATGTGTA--TGTTTGTCTGTGAGAGTGTTGTCATGTG 658
consensus_14615#2 ------------GCTTGTGTGGAATGTGTA--TGTTTGTCTGTGAGAGTGTTGTCATGTG 46
consensus_14615#1 AGCAGCCGACGGAATGGCGAAGGNGGTGGCGCTGGCTGTCCTCGTGGTGGCCGTCGCGGN 141
* * * * *** ** **** * * * *** *
consensus_14615#0 TGTGTGGTTGGCCGGTTAATAGTGCTTGTTGCATTGATCGCATGCCTAATATACTTG-GG 717
consensus_14615#2 TGTGTGGTTGGCCGGTTAATAGTNCTTGTTGCATTGATCGCATGCCTAATATACTTG-GG 105
consensus_14615#1 GGNGCTGCTGGCCGTGGCGCCGGCGNTGNACCGTGNGTTGTNTAACANGAGCANCGACGA 201
* * * ****** * ** * * * * * * * *
consensus_14615#0 GTTTTTCTTAAATATAAAAAGGATTATACAATAATTTTCAAATANATGAAGATCTGTGAA 777
consensus_14615#2 GTTTNTCTATNATCCANAAA---------------------------------------- 125
consensus_14615#1 GTTCATGAAGTGCCAGCCGNNGGCGGNC-------------------------------- 229
*** *
consensus_14615#0 AAACACATCACGAGAAGACGCGGGGCGGGACCAGGGCGATCGGCACCCAATGAAGGCACA 837
consensus_14615#2 ------------------------------------------------------------
consensus_14615#1 ------------------------------------------------------------
consensus_14615#0 TAACCCAACAATCGCCACAACACACAATATAGACG 872
consensus_14615#2 -----------------------------------
consensus_14615#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||