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Oryza sativa
cluster # 14620 cluster # 14620       Sequences # 17       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14620#0 length = 1268 sequences # 14  
consensus_14620#1 length = 813 sequences # 3  

consensusID : consensus_14620#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1268
fasta sequence
                              [AAGAGGATCGTCTCGGCTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGCGACGACCGCGGCTGGAACCAGCTCCACGTCGCCTCCCGCAAGGGCGACCTCAACCAGGTGAGGCGTCTCCTGGATGATGGCATGGATGTCAATGCACCTGCATGGGGGCCAAAATCACCTGGCGCTACCCCCCTGCATTTGGCTGCTCAGGGTGGACATGTTAAAATCATGGACGAGCTACTGGAGCGGGGTGCAAATATTGATGCTCGCACAAAAGGAGCTTGTGGATGGACCCC-T-CTACATATTGCTGCTAAGGAAAGGAACAAAAGAGCTGTCAGGTTTCTGATTGAGAATGGTGCATTC-TTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGA-AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGGGCTCGGAGAGCTAGAGGAAAGC-AATCTCCTCAGTCTGGCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTT-TACTTTGTGAAATTGGAACG-AATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTACTACACATTC-TTAATATCAGAAT-CAATATCCGGTTTGCGTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK103103             [AAGAGGATCGTCTCGGCTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGCGACGACCGCGGCTGGAACCAGCTCCACGTCGCCTCCCGCAAGGGCGACCTCAACCAGGTGAGGCGTCTCCTGGATGATGGCATGGATGTCAATGCACCTGCATGGGGGCCAAAATCACCTGGCGCTACCCCCCTGCATTTGGCTGCTCAGGGTGGACATGTTAAAATCATGGACGAGCTACTGGAGCGGGGTGCAAATATTGATGCTCGCACAAAAGGAGCTTGTGGATGGACCCC T CTACATATTGCTGCTAAGGAAAGGAACAAAAGAGCTGTCAGGTTTCTGATTGAGAATGGTGCATTC TTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGA AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGGGCTCGGAGAGCTAGAGGAAAGC AATCTCCTCAGTCTGGCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACG AATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTACTACACATTC TTAATATCAGAAT CAATATCCGGTTTGCGTCCTAt                          ]
[+] EMBL CF318947             [     GATCGTCTCGGCTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF322097             [     GATCGTCTCGGCTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCTGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK060523             [        CGTCTCGGCTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGCGACGACCGCGGCTGGAACCAGCTCCACGTCGCCTCCCGCAAGGGCGACCTCAACCAGGTGAGGCGTCTCCTGGATGATGGCATGGATGTCAATGCACCTGCATGGGGGCCAAAATCACCTGGCGCTACCCCCCTGCATTTGGCTGCTCAGGGTGGACATGTTAAAATCATGGACGAGCTACTGGAGCGGGGTGCAAATATTGATGCTCGCACAAAAGGAGCTTGTGGATGGACCCC T CTACATATTGCTGCTAAGGAAAGGAACAAAAGAGCTGTCAGGTTTCTGATTGAGAATGGTGCATTC TTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGA AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGGGCTCGGAGAGCTAGAGGAAAGC AATCTCCTCAGTCTGGCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACG AATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTACTACACATTC TTAATATCAGAAT CAATATCCG                                       ]
[+] EMBL CF317372             [               GCTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATATTCCCCCACCTCCCCCCTTGTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATGTCTATACTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTGTCAGCATGAGCCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB681105             [                     CGTCTTCTATCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGCGACGACCGCGGCTGGAACCAGCTCCACGTCGCCTCCCGCAAGGGCGACCTCAACCAGGTGAGGCGTCTCCTGGATGATGGCATGGATGTCAATGCACCTGCATGGGGGCCAAAATCACCTGGCGCTACCCCCCTGCATTTGGCTGCTCACGGTGGACATGTTAAAATCATGGACGAGCTACTGGAGCGGGGTGCAAATATTGATGCTCGCACAAAAGGAGCTTGTGGATGGACCCC T CTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB681106             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGCGACGACCGCGGCTGGAACCAGCTCCACGTCGCCTCCCGCAAGGGCGACCTCAACCAGGTGAGGCGTCTCCTGGATGATGGCATGGATGTCAATGCACCTGCATGGGGGCCAAAATCACCTGGCGCTACCCCCCTGCATTTGGCTGCTCAGGGTGGACATGTTAAAATCATGGACGAGCTACTGGAGCGGGGTGCAAATATTGATGCTCGCACAAAAGGAGCTTGTGGATGGACCCC T CTACATATTGCTGCTAAGGAAAGGAACAAAAGAGCTGTCAGGTTTCTGATTGAGAATGGTGCATTC TTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGA AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGGGCTCGGAGAGCTAGAGGAAAGC AATCTCCTCAGTCTGGCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACG AATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTACTACACATTC  GAATATCAGAAT CAATATCCGGTTTGCGTCCAAAAAAAAAga                  ]
[+] EMBL BI805635             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCTGCTCAGGGTGGACATGTT AAATCATGGACGA CTACTGGAGCGGGGTGCAAATATTGATGCTCGCAC AAAGGAGCTTGTGGATGGACCCC TGCTACATATTGCTGCTAAGGAAAGGAACCAAAGAGCTGTCAGGTTTCTGATTGAGAATGGTGCATTC TT CCCCCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGA AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGGGCTCGGAGAGCTAGAGGAAAGC CATCTCCTCAGTCTGGCCAAGAGGTCCATCTTGGATCAACNGAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACG AATTACCCTGTGAATCTTACATGCGACNTGGTACTAGCATGCCTTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCCTTGTGTTCTTACTACCCTGGTAGCATGTATTCTACTACACATTC TTAATATCAGAAT C ATATCCGGTTNGCGTCCCAAA                         ]
[-] EMBL CF318948             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGCTCAGGGTGGACATGTTAAAATCATGGACGAGCTACTGGAGCGGGGTGCAAATATTGATGCTCGCACAAAAGGAGCTTGTGGATGGACCCCTT CTACATATTGCTGCTAAGGAAAGGAACAAAAGAGCTGTCAGGTTTCTGATTGAGAATGGTGCATTC TTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGA AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGGGCTCGGAGAGCTAGAGGAAAGC AATCTCCTCAGTCTGGCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACG AATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTACTACACATTC TTAATATCAGAAT CAATATCCGGTTTGCGTCCTATGACAGTAAAAA               ]
[+] EMBL AU172364             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTNTGATTGAGAATGGTGCATTC TTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGA AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTNTGGGCTCGGAGAGCTAGAGGAAAGC AATCTCCTCAGTNTGGCAAAGAGGTCAATNTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACG AATTACCATGTGAATNTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTNTACTACACATTN TTAATATCAGAAT CAATATCCGGTTTGCGTCCAAAAAAAAAAAAA                ]
[+] EMBL BI810382             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATGGTCCATTC TTCCCACCGGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGA AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGAGCTCGGAGAGCTAGAGGAAAGC  ATCTCCTCAGTCT GCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACGCCATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTGCTACACATTC TTAATATCAGAATCCAATATCCGGTTTGCG   TAAAAAAAA                    ]
[+] EMBL BI797145             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTGCATTCTTTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGATTGGAATGGGCATATGAGATGATAGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTCTGAGCTCGGAGAGCTAGAGGAAAGCAAATCTCCTCAGTCTGGCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTTGTGCTTTGTGAAATTGGAACG AATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCCTTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTGCTACACATTCGTTAATATCAGAAT CAATATCCGGTTTGCGTACTAAAAAAAAA                   ]
[-] EMBL CF336837             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTTCAATCCTCCTCTCCATTACTGCTTTGGATTGGAATGGGCATATGAGATGA AGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACTTCTTTGGGCTCGGAGAGCTAAAGGAAAGC AATTTCCTCAGTTTGGCAAAAAGGTCAATCTTGGATCAACAAAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACG AATTACCATGTGAATTTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTTTACTACCCATTT TTAATATCAGAAT CAATATCCGGTTTGCGTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF324957             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTCAGTCTGGCAAAGAGGTCAATCTTGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTT TACTTTGTGAAATTGGAACG AATTACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGTTACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTACTACACATTC TTAATATCAGAAT CAATATCCGGTTTGCGTCCAAAAAAAAAAAAAAA              ]


>consensus_14620#0 AAGAGGATCGTCTCGGCTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGA TGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAG CCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCT CACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGG CTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATAT TTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTC CCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCC TCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGG ATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGC GACGACCGCGGCTGGAACCAGCTCCACGTCGCCTCCCGCAAGGGCGACCTCAACCAGGTG AGGCGTCTCCTGGATGATGGCATGGATGTCAATGCACCTGCATGGGGGCCAAAATCACCT GGCGCTACCCCCCTGCATTTGGCTGCTCAGGGTGGACATGTTAAAATCATGGACGAGCTA CTGGAGCGGGGTGCAAATATTGATGCTCGCACAAAAGGAGCTTGTGGATGGACCCCTCTA CATATTGCTGCTAAGGAAAGGAACAAAAGAGCTGTCAGGTTTCTGATTGAGAATGGTGCA TTCTTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGA TTGGAATGGGCATATGAGATGAAGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACT TCTCTGGGCTCGGAGAGCTAGAGGAAAGCAATCTCCTCAGTCTGGCAAAGAGGTCAATCT TGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTTTACTTTGTGAAATTGGAACGAAT TACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGT TACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTACTA CACATTCTTAATATCAGAATCAATATCCGGTTTGCGTCCTAAAAAAAAAAAAAAAAAAAA AAAAAAAA



consensusID : consensus_14620#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 813
fasta sequence
                              [CTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGCGACGACCGCGGCTGGAACTCAGCTCACGTCGCCTCCCGCAGGGGCGACCTAATCAAGTTGGGCGTTGGCTGGATGATGCGGTGATGGGAATGCACTTGCTGGGGGCCAAATCACTTGGGGTACCCCCTGGATATGCTTGTAAGGGGGCATGGTAAAACATGGACAATCTTTGGCCGGTGCGAAATATGTGTCGCCAAAGGGCTCTGGTTGCCCCTTTATTAGTGCTAGGGTGGTGGGAAGATGACGGATATATGGGATGAGTTATAGCGTGGTTGAGCACAGTGAAACA]

[+] EMBL AW155000             [CTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGCGACGACCGCGGCTGGAACTCAGCTCACGTCGCCTCCCGCAGGGGCGACCTAATCAAGTTGGGCGTTGGCTGGATGATGCGGTGATGGGAATGCACTTGCTGGGGGCCAAATCACTTGGGGTACCCCCTGGATATGCTTGTAAGGGGGCATGGTAAAACATGGACAATCTTTGGCCGGTGCGAAATATGTGTCGCCAAAGGGCTCTGGTTGCCCCTTTATTAGTGCTAGGGTGGTGGGAAGATGACGGATATATGGGATGAGTTATAGCGTGGTTGAGCACAGTGAAACA]
[+] EMBL C28963               [    TCGTCTTCTAGCTAGGGTTCGTAAGTNCTAGGGTTTGCAATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTNCTCTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA753693             [      GTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATTCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATTTTTCTCCTCACTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTTGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCAGCTCTCTCAGCATGAG                                                                                                                                                                                                                                                                                                                             ]


>consensus_14620#1 CTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGATGATCCCCAACTCCTC CTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAGCCGCGCGCGAGAGGAG AAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCTCACCCCATCGCCGTCT CCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGGCTTGAATCCCTTTGCT CCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATATTTCTCCTCGCTCGATC CATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTCCCGATTCGATTCGATT CGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCCTCCGTCGTCGCGGCCC TATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGGATGGTGCAATTCCGCA GCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGCGACGACCGCGGCTGGA ACTCAGCTCACGTCGCCTCCCGCAGGGGCGACCTAATCAAGTTGGGCGTTGGCTGGATGA TGCGGTGATGGGAATGCACTTGCTGGGGGCCAAATCACTTGGGGTACCCCCTGGATATGC TTGTAAGGGGGCATGGTAAAACATGGACAATCTTTGGCCGGTGCGAAATATGTGTCGCCA AAGGGCTCTGGTTGCCCCTTTATTAGTGCTAGGGTGGTGGGAAGATGACGGATATATGGG ATGAGTTATAGCGTGGTTGAGCACAGTGAAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14620#0      AAGAGGATCGTCTCGGCTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGA 60
consensus_14620#1      ----------------CTCGTCGTCTTCTAGCTAGGGTTCGTAAGTTCTAGGGTTTGCGA 44
                                       ********************************************

consensus_14620#0      TGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAG 120
consensus_14620#1      TGATCCCCAACTCCTCCTCCCTCTAGTATTTCGAGCGAATTCTCCAACACTTTCACCCAG 104
                       ************************************************************

consensus_14620#0      CCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCT 180
consensus_14620#1      CCGCGCGCGAGAGGAGAAGGAAGATAGATAGATAGATCGCTCCGCACATACTATGGTGCT 164
                       ************************************************************

consensus_14620#0      CACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGG 240
consensus_14620#1      CACCCCATCGCCGTCTCCACCGCCGATGCTCCCCAAGAAGCTCCGCGCGCTCGGTCCAGG 224
                       ************************************************************

consensus_14620#0      CTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATAT 300
consensus_14620#1      CTTGAATCCCTTTGCTCCCTTCGGCATGGGTAACTACTATTCCTCCTCTCGCTAATATAT 284
                       ************************************************************

consensus_14620#0      TTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTC 360
consensus_14620#1      TTCTCCTCGCTCGATCCATCTTCCCCCACCTCCCCCCTTCTCAAACAATTAATCCCCTTC 344
                       ************************************************************

consensus_14620#0      CCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCC 420
consensus_14620#1      CCGATTCGATTCGATTCGGTTCGGTTCGCTTTCGGACTCGGTTTCAATTTCGATTCTCCC 404
                       ************************************************************

consensus_14620#0      TCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGG 480
consensus_14620#1      TCCGTCGTCGCGGCCCTATTCTAGCCGCCCCCTCCCCTCCGCTCGATTGCCTGCCTCCGG 464
                       ************************************************************

consensus_14620#0      ATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGC 540
consensus_14620#1      ATGGTGCAATTCCGCAGCTCTCTCAGCATGAGCCGGGCACGGACCCGCCACGGCGATGGC 524
                       ************************************************************

consensus_14620#0      GACGACCGCGGCTGGAACCAGCTCCACGTCGCCTCCCGCAAGGGCGACCTCAACCAGGTG 600
consensus_14620#1      GACGACCGCGGCTGGAACTCAGCTCACGTCGCCTCCCGCAGGGGCGACCT-AATCAAGTT 583
                       ******************      **************** ********* ** ** ** 

consensus_14620#0      AGGCGTCTCCTGGATGATGGCATGGATGTCAATGCACCTGCATGGGGGCCAAAATCACCT 660
consensus_14620#1      GGGCGTTGGCTGGATGATGCGGTG-ATGGGAATGCACTTGC-TGGGGGCCAAA-TCACTT 640
                        *****   **********   ** ***  ******* *** *********** **** *

consensus_14620#0      GGCGCTACCCCCCTGCATTTGGCTGCTCAGGGTGGACATGTTAAAATCATGGACGAGCTA 720
consensus_14620#1      GGGGTA--CCCCCTGGATATGCTTGT---AAGGGGGCATGGTAAAA-CATGGACAATCT- 693
                       ** *    ******* ** **  **      * ** **** ***** ******* * ** 

consensus_14620#0      CTGGAGCGGGGTGCAAATATTGATGCTCGCACAAAAGGAGCTTGTGGATGGACCCCTCTA 780
consensus_14620#1      -TTGGCCGGTGCG-AAATAT--GTG-TCGC-CAAAGGGCTCTGGTTG-----CCCCTT-- 740
                        * *  *** * * ******   ** **** **** **  ** ** *     *****   

consensus_14620#0      CATATTGCTGCTAAGGAAAGGAACAAAAGAGCTGTCAGGTTTCTGATTGAGAATGGTGCA 840
consensus_14620#1      --TATTAGTGCTAGGGTGGTGGGAAGATGACGGAT---ATATGGGATGAGTTATAGCGTG 795
                         ****  ***** **    *   * * **    *    * *  ***     ** * *  

consensus_14620#0      TTCTTGCCACCTGACATGAATGACCACAGGTTCAATCCTCCTCTCCATTACTGCTCTGGA 900
consensus_14620#1      GTTGAGCACAGTGAAACA------------------------------------------ 813
                        *   **    *** *                                            

consensus_14620#0      TTGGAATGGGCATATGAGATGAAGCGCATGCAAGACGAAAGTGATTCGACCGGTGAAACT 960
consensus_14620#1      ------------------------------------------------------------
                                                                                   

consensus_14620#0      TCTCTGGGCTCGGAGAGCTAGAGGAAAGCAATCTCCTCAGTCTGGCAAAGAGGTCAATCT 1020
consensus_14620#1      ------------------------------------------------------------
                                                                                   

consensus_14620#0      TGGATCAACAGAGTTTGTAAACATCAAGGGTCACGTTTACTTTGTGAAATTGGAACGAAT 1080
consensus_14620#1      ------------------------------------------------------------
                                                                                   

consensus_14620#0      TACCATGTGAATCTTACATGCGACATGGTACTAGCATGCATTGCGATGTTGTTGTGGGGT 1140
consensus_14620#1      ------------------------------------------------------------
                                                                                   

consensus_14620#0      TACTTGTGTTTTCGATAATTGCATTGTGTTCTTACTACACTGGTAGCATGTATTCTACTA 1200
consensus_14620#1      ------------------------------------------------------------
                                                                                   

consensus_14620#0      CACATTCTTAATATCAGAATCAATATCCGGTTTGCGTCCTAAAAAAAAAAAAAAAAAAAA 1260
consensus_14620#1      ------------------------------------------------------------
                                                                                   

consensus_14620#0      AAAAAAAA 1268
consensus_14620#1      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)