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Oryza sativa
cluster # 14624 cluster # 14624       Sequences # 17       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14624#0 length = 1003 sequences # 3  
consensus_14624#1 length = 754 sequences # 10  
consensus_14624#2 length = 572 sequences # 1  
consensus_14624#3 length = 466 sequences # 1  
consensus_14624#4 length = 433 sequences # 1  
consensus_14624#5 length = 213 sequences # 1  

consensusID : consensus_14624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1003
fasta sequence
                              [ACAGGAATGTCGACATGCTAGCAGCAAGACGCAAAGAAAAGGAGTACTTTGAAAGTAGCCCAGATTATGGTCACTTGGCACATAAAATGGGTGCAGAGTACCTTGCTAAGCTTCTGTCTCAGCACTTAGAGGCTGTGATCAGAGCAAAAATTCCAAGTATTATAGCCATGATTAACAAAACAATTGATGAAATTGAAGCTGAGTTGGATCGCCTTGGTAGGCCAATTGGAGGTGATGCTGGGGCACAACTGTACACAATATTGGACATGTGTCGTGCGTTTGACCGAGTTTTTAAAGAGCACCTAGATGGCGGTCGGCCAGGTGGAGATCGTATTTATGGTGTCTTTGACCACCAATTACCAGCAGCACTGAAAAAGCTTCCATTTGATAAGCATCTTTCATTGCAAAATGTTCGGAAAGTCATTTCAGAGGCTGATGGTTATCAACCCCACTTGATTGCCCCTGAGCAAGGGTACAGAAGGCTTATAGATAGTTCGCTCCACTACTTCAGGGGTCCAGCGGAAGCTTCAGTTGATGCGGTTCATTTGGTCTTGAAGGAACTNGTTCGTAGATCGATTGCAGCAACAGAGGAAGTGAAGCGTTTCCCAACACTTCAGACAGATATAGCTGCTGCAGCANATGAAAGCCTGGAAAAGA-TTCGTGAGGATGGGTCG-AAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAACTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGAATAGGGGGCTAATAATAACAACTCCAGCCAATGACAGATTTCAGGACAACCCATTTAAGAGGAAATCGGGTCAAATGTATCATTCTTACATTTAACAGGGGTTTGTGAGAACATTGAGGAAACACATTTCCACAAAAGGCTGGGGTGCACTTGTCAAGTGGAAGGAGGCAAAAAAGAAACTTGGTTTTAACCGTTTTTTATGGCTATTGGTGGGAGGCAAGGAGAAAAAAACACCTTCANCGGCGAATG]

[+] EMBL BE040116             [ACAGGAATGTCGACATGCTAGCAGCAAGACGCAAAGAAAAGGAGTACTTTGAAAGTAGCCCAGATTATGGTCACTTGGCACATAAAATGGGTGCAGAGTACCTTGCTAAGCTTCTGTCTCAGCACTTAGAGGCTGTGATCAGAGCAAAAATTCCAAGTATTATAGCCATGATTAACAAAACAATTGATGAAATTGAAGCTGAGTTGGATCGCCTTGGTAGGCCAATTGGAGGTGATGCTGGGGCACAACTGTACACAATATTGGACATGTGTCGTGCGTTTGACCGAGTTTTTAAAGAGCACCTAGATGGCGGTCGGCCAGGTGGAGATCGTATTTATGGTGTCTTTGACCACCAATTACCAGCAGCACTGAAAAAGCTTCCATTTGATAAGCATCTTTCATTGCAAAATGTTCGGAAAGTCATTTCAGAGGCTGATGGTTATCAACCCCACTTGATTGCCCCTGAGCAAGGGTACAGAAGGCTTATAGATAGTTCGCTCCACTACTTCAGGGGTCCAGCGGAAGCTTCAGTTGATGCGGTTCATTTGGTCTTGAAGGAACTNGTTCGTAGATCGATTGCAGCAACAGAGGAAGTGAAGCGTTTCCCAACACTTCAGACAGATATAGCTGCTGCAGCANATGAAAGCCTGGAAAAGA TTCGTGAGGATGGGTCG AAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAACTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGAATAGGGGGCTAATAATAACAACTCCAGCCAATGACAGATTTCAGGACAACCCATTTAAGAGGAAATCGGGTCAAATGTATCATTCTTACATTTAACAGGGGTTTGTGAGAACATTGAGGAAACACATTTCCACAAAAGGCTGGGGTGCACTTGTCAAGTGGAAGGAGGCAAAAAAGAAACTTGGTTTTAACCGTTTTTTATGGCTATTGGTGGGAGGCAAGGAGAAAAAAACACCTTCANCGGCGAATG]
[+] EMBL CA753494             [ACAGGAATGTCGACATGCTAGCAGCAAGACGCAAAGAAAAGGAGTACTTTGAAAGTAGCCCAGATTATGGTCACTTGGCACATAAAATGGGTGCAGAGTACCTTGCTAAGCTTCTGTCTCAGCACTTAGAGGCTGTGATCAGAGCAAAAATTCCAAGTATTATAGCCATGATTAACAAAACAATTGATGAAATTGAAGCTGAGTTGGATCGCCTTGGTAGGCCAATTGGAGGTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS0738A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGGTTATCAACCCCACTTGATTGCCCCTGAGCAAGGGTACAGAAGGCTTATAGATAGTTCGCTCCACTACTTCAGGGGTCCAGCGGAAGCTTCAGTTGATGCGGTTCATTTGGTCTTGAAGGAACTTGTTCGTAGATCGATTGCAGCAACAGAGGAGTTGAAGCGTTTCCCAACACTTCAGACAGATATAGCTGCTGCAGCAAATGAAAGCCTGG AAAGATTTCGTGAGGAT GGTCGAAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAGCTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGATAAGGGGGCTAATAATAAC ACTCCAGCCAATGACAGATATCAGGACA                                                                                                                                                                                                         ]


>consensus_14624#0 ACAGGAATGTCGACATGCTAGCAGCAAGACGCAAAGAAAAGGAGTACTTTGAAAGTAGCC CAGATTATGGTCACTTGGCACATAAAATGGGTGCAGAGTACCTTGCTAAGCTTCTGTCTC AGCACTTAGAGGCTGTGATCAGAGCAAAAATTCCAAGTATTATAGCCATGATTAACAAAA CAATTGATGAAATTGAAGCTGAGTTGGATCGCCTTGGTAGGCCAATTGGAGGTGATGCTG GGGCACAACTGTACACAATATTGGACATGTGTCGTGCGTTTGACCGAGTTTTTAAAGAGC ACCTAGATGGCGGTCGGCCAGGTGGAGATCGTATTTATGGTGTCTTTGACCACCAATTAC CAGCAGCACTGAAAAAGCTTCCATTTGATAAGCATCTTTCATTGCAAAATGTTCGGAAAG TCATTTCAGAGGCTGATGGTTATCAACCCCACTTGATTGCCCCTGAGCAAGGGTACAGAA GGCTTATAGATAGTTCGCTCCACTACTTCAGGGGTCCAGCGGAAGCTTCAGTTGATGCGG TTCATTTGGTCTTGAAGGAACTNGTTCGTAGATCGATTGCAGCAACAGAGGAAGTGAAGC GTTTCCCAACACTTCAGACAGATATAGCTGCTGCAGCANATGAAAGCCTGGAAAAGATTC GTGAGGATGGGTCGAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAACTACCTAACTG TAGAATTTTTCAGAAAACTCCCTACAGAACCAGAATAGGGGGCTAATAATAACAACTCCA GCCAATGACAGATTTCAGGACAACCCATTTAAGAGGAAATCGGGTCAAATGTATCATTCT TACATTTAACAGGGGTTTGTGAGAACATTGAGGAAACACATTTCCACAAAAGGCTGGGGT GCACTTGTCAAGTGGAAGGAGGCAAAAAAGAAACTTGGTTTTAACCGTTTTTTATGGCTA TTGGTGGGAGGCAAGGAGAAAAAAACACCTTCANCGGCGAATG



consensusID : consensus_14624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 754
fasta sequence
                              [CTTCAGTTGATGCGGTTCATTTGGTCTTGAAGGATCTTGTTCGTAGATCGATTGCAGCAACAGAGGAGTTGAAGCGTTTCCCAACACTTCAGACAGATATAGCTGCTGCAGCAAATGAAAGCCTGGAAAGATTTCGTGAGGATGGTCGAAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAGCTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGATAAGGGGGCTAATAATAACACTCCAGCCAATGACAGATATCAGGACAACCATTTAAGAAGAA-TCGGGTCAAATGTATCATCTTACATTAACATGGTTTGTGAGACATTGAGGAACACCATTCCAAAAGCTGTGGTGCACTGTCAAGTGAAGGAGGC-AAAAAGAAACTTGCTTAACCGTTTCTATGCTCATGTGGGAAG-CAAGGAGAAGAA-ACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCC-TTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACA-CACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCA-CATGGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGGCCATCTTGGCC]

[+] EMBL CB000122             [CTTCAGTTGATGCGGTTCATTTGGTCTTGAAGGATCTTGTTCGTAGATCGATTGCAGCAACAGAGGAGTTGAAGCGTTTCCCAACACTTCAGACAGATATAGCTGCTGCAGCAAATGAAAGCCTGGAAAGATTTCGTGAGGATGGTCGAAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAGCTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGATAAGGGGGCTAATAATAACACTCCAGCCAATGACAGATATCAGGACAACCATTTAAGAAGAA TCGGGTCAAATGTATCATCTTACATTAACATGGTTTGTGAGACATTGAGGAACACCATTCCAAAAGCTGTGGTGCACTGTCAAGTGAAGGAGGC AAAAAGAAACTTGCTTAACCGTTTCTATGCTCATGTGGGAAG CAAGGAGAAGAA ACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCC TTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACA CACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCA CATGGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGGCCATCTTGG  ]
[+] EMBL AU175009             [                                                                                           GACAGATATAGCTGCTGCAGCAAATGAAAGCCTGGAAAGATTTCGTGAGGATGGTCGAAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAGCTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGATAAGGGGGCTAATAATAACACTCCAGCCAATGACAGATATCAGGACAACCATTTAAGAAGAA TCGGGTCAAATGTATCATCTTACATTAACATGGTTTGTGAGACATTGAGGAACACCATTCCAAAAGCTGTGGTGCACTGTCAAGTGAAGGAGGC AAAAAGAAACTTGCTTAACCGTTTCTATGCTCATGTGGGAAG CAAGGAGAAGAA ACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCC T                                                                                                                                                                                                                                                                     ]
[-] EMBL CF326145             [                                                                                                                                                                                                                                                           CCAGCCAATGACAGATATCAGGACAACCATTTAAGAAGAA TCGGGTCAAATGTATCATCTTACATTAACATGGTTTGTGAGACATTGAGGAACACCATTCCAAAAGCTGTGGTGCACTGTCAAGTGAAGGAGGC AAAAAGAAACTTGCTTAACCGTTTCTATGCTCATGTGGGAAG CAAGGAGAAGAA ACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCC TTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACA CACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCA CATGGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGGCCATCTTGGC ]
[-] EMBL CB964809             [                                                                                                                                                                                                                                                                           ATCAGGACAACCATTTAAGAATAATTCGGTTCAAATGTATCATCTTACATTAACATGGTTTGTGAGACATTGAGGAACACCATTCCAAAAGCTGTGGTGCACTGTCAAGTGAAAGAGGC AATAAGAAACTTGCTTAACCGTTTCTATGCTCATGTGGGAAG CAAGGAGAAGAA ACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCC TTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGCTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACA CACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCA CATGGAGATCCGTACACTATTCGTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGGCCATCTTGGC ]
[+] EMBL AU032990             [                                                                                                                                                                                                                                                                                                                                                           CATTCCAAAAGCTGTGGNGCACTGTCAAGTGAAGGAGGC AAAAAGAAACTNGCTTAACCGTTTATATGCTCATGTGGGAAG CAAGGAGAAGAA ACAGCTCAGCGCGATGTTGGATGAGGATCCCGNTTTGATGGAGAAGAGGGATTCCNTTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACA CACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCA CATGGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGGCCATCTTGG  ]
[+] EMBL BM419221             [                                                                                                                                                                                                                                                                                                                                                                               ACTGTCAAGTGAAGGAGGCNNAAAAGAAACTTGCTTAACCGTTTCTATGCTCATGTGGGAAGCCAAGGAGAAGAATACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCC TTAGTCAAGAGGCTAGAGCTGTACNAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACACCACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCACCATGGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTT GCCATCTTG   ]
[+] EMBL AU175008             [                                                                                                                                                                                                                                                                                                                                                                                                   AAAAAGAAACTTGCTTAACCGTTTCTATGCTCATGTGGGAAG CAAGGAGAAGAA ACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCC TTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACA CACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCA CATGGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGGCCATCTTGG  ]
[-] EMBL BU673108             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          cagGGTTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGCTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACA CACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCA CATGGAGATCCGTACACTATTCGTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTGGCCCATC TGGCC]
[+] EMBL CF331307             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACA CACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCA CATGGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGGCCATCTTGG  ]
[+] EMBL BI797024             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CATTTACGTCTGGATTCA CATGGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGGCCATCTTGG  ]


>consensus_14624#1 CTTCAGTTGATGCGGTTCATTTGGTCTTGAAGGATCTTGTTCGTAGATCGATTGCAGCAA CAGAGGAGTTGAAGCGTTTCCCAACACTTCAGACAGATATAGCTGCTGCAGCAAATGAAA GCCTGGAAAGATTTCGTGAGGATGGTCGAAAGACAGTTATTCGTCTTGTTGAGATGGAGG CCAGCTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGATAAGGGGGCTA ATAATAACACTCCAGCCAATGACAGATATCAGGACAACCATTTAAGAAGAATCGGGTCAA ATGTATCATCTTACATTAACATGGTTTGTGAGACATTGAGGAACACCATTCCAAAAGCTG TGGTGCACTGTCAAGTGAAGGAGGCAAAAAGAAACTTGCTTAACCGTTTCTATGCTCATG TGGGAAGCAAGGAGAAGAAACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGG AGAAGAGGGATTCCTTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCG ACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACAT CTGCGACACACAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCACAT GGAGATCCGTACACTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTT GTCAGACAAGTATATTTCCTTGGCCATCTTGGCC



consensusID : consensus_14624#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence
                              [CTCTTTTAATGGAGCCCACTCCTTACCTTAGATTTTCAAGAACNCCTCAGACCAATAAGGGCCTAATAATACACTCCACCTTGCCAGATATCAGCCACCCATTTAAGAAGAATCGGGTCAAAATGTATCATCTTACATTAAACATGTTTGTGAGACCATTTGAGGGAACACCATTCCAAACTGTGGTGCACTGTCAAGTGAAGGAGCCAAAAGAAACTTGCTTAACCTTTCTATGCTCATGTGGGAAGCAAGGAGAAGAAACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCCTTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACACCCAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCACATGGAGATCCGTACACTATTCTTTCTTTCTTTCTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGCCATCTTG]

[+] EMBL BI806416             [CTCTTTTAATGGAGCCCACTCCTTACCTTAGATTTTCAAGAACNCCTCAGACCAATAAGGGCCTAATAATACACTCCACCTTGCCAGATATCAGCCACCCATTTAAGAAGAATCGGGTCAAAATGTATCATCTTACATTAAACATGTTTGTGAGACCATTTGAGGGAACACCATTCCAAACTGTGGTGCACTGTCAAGTGAAGGAGCCAAAAGAAACTTGCTTAACCTTTCTATGCTCATGTGGGAAGCAAGGAGAAGAAACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATGGAGAAGAGGGATTCCTTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATCGACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACATCTGCGACACCCAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCACATGGAGATCCGTACACTATTCTTTCTTTCTTTCTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACAAGTATATTTCCTTGCCATCTTG]


>consensus_14624#2 CTCTTTTAATGGAGCCCACTCCTTACCTTAGATTTTCAAGAACNCCTCAGACCAATAAGG GCCTAATAATACACTCCACCTTGCCAGATATCAGCCACCCATTTAAGAAGAATCGGGTCA AAATGTATCATCTTACATTAAACATGTTTGTGAGACCATTTGAGGGAACACCATTCCAAA CTGTGGTGCACTGTCAAGTGAAGGAGCCAAAAGAAACTTGCTTAACCTTTCTATGCTCAT GTGGGAAGCAAGGAGAAGAAACAGCTCAGCGCGATGTTGGATGAGGATCCCGCTTTGATG GAGAAGAGGGATTCCTTAGTCAAGAGGCTAGAGCTGTACAAATCTGCCCGGAACGAGATC GACTCAGTCGCGTGGAAATGATCGGTTAGCGAAGTCACAGCTGGAAGAGATAGACATACA TCTGCGACACCCAGATCATTGCCGTAGAATGCTCTAATTCCATTTACGTCTGGATTCACA TGGAGATCCGTACACTATTCTTTCTTTCTTTCTTTCTTTCATGCGAGTGTCCTTTCTACC TTGTCAGACAAGTATATTTCCTTGCCATCTTG



consensusID : consensus_14624#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence
                              [ACAGATATAGCTGCTGCACAAATGAAAGCCTGGAAAGATTTCGTGAGGATGGTCGAAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAGCTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGATAAGGGGGCTAATAATAACACTCCAGCCATGACAGATATCAGGACAACCATTTAAGAAGAATCGGTAACAATTCAACATTCTATTTTGTTTCTTTAATGGCAATTGATTGAGTCAACTGTTCTAAGACCTCAACACAGAGGTCACACGAAGTACTTAACAACTGACTTAATAAGCAGAATCTAAGATGTAACATAGGGTACTAGTGCCATTCACGTTCTGCTGAGTGCTGACACTAGCAACATGTCAAGATATGACCATATGTGAATTTCGATGACAACAATTATGCGAACTAATTTTTTAAATCGACAAGTATATTCATGACAAAAAAA]

[+] EMBL BI805007             [ACAGATATAGCTGCTGCACAAATGAAAGCCTGGAAAGATTTCGTGAGGATGGTCGAAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAGCTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACAGAACCAGATAAGGGGGCTAATAATAACACTCCAGCCATGACAGATATCAGGACAACCATTTAAGAAGAATCGGTAACAATTCAACATTCTATTTTGTTTCTTTAATGGCAATTGATTGAGTCAACTGTTCTAAGACCTCAACACAGAGGTCACACGAAGTACTTAACAACTGACTTAATAAGCAGAATCTAAGATGTAACATAGGGTACTAGTGCCATTCACGTTCTGCTGAGTGCTGACACTAGCAACATGTCAAGATATGACCATATGTGAATTTCGATGACAACAATTATGCGAACTAATTTTTTAAATCGACAAGTATATTCATGACAAAAAAA]


>consensus_14624#3 ACAGATATAGCTGCTGCACAAATGAAAGCCTGGAAAGATTTCGTGAGGATGGTCGAAAGA CAGTTATTCGTCTTGTTGAGATGGAGGCCAGCTACCTAACTGTAGAATTTTTCAGAAAAC TCCCTACAGAACCAGATAAGGGGGCTAATAATAACACTCCAGCCATGACAGATATCAGGA CAACCATTTAAGAAGAATCGGTAACAATTCAACATTCTATTTTGTTTCTTTAATGGCAAT TGATTGAGTCAACTGTTCTAAGACCTCAACACAGAGGTCACACGAAGTACTTAACAACTG ACTTAATAAGCAGAATCTAAGATGTAACATAGGGTACTAGTGCCATTCACGTTCTGCTGA GTGCTGACACTAGCAACATGTCAAGATATGACCATATGTGAATTTCGATGACAACAATTA TGCGAACTAATTTTTTAAATCGACAAGTATATTCATGACAAAAAAA



consensusID : consensus_14624#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence
                              [GGAACGCCCCTTCCCAAGCCTTTGGTGCACCTGTCAGGTGAAGGAGGCCCAAAAGAAACTTGTCTTAACCGGTTCTATGCTCATGTGGGAAGCCACAGGAGAAGAAACAGCTCAGCGCGATGTTGGATGAGGATCCCNCTTTGATGGAGAAGAGGGATTCCTTAGTCAAGAGGCTAGAGCTGTACCAATCTGCCCGGAACCGAGATCGACTCACGTCGCGTGGAAATGATCGGTTAGCGAAGTCACCACGCTGGAAGAGATAGACATACACTCTGCGACACACCAGATCACTTGCCGCTAGAATGCTCTAATTCCACTTTACGTCTGGATTCACCACTGGAGATCCGCTACACCTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACCAGTATATTTCCTTGGCCACTCTTGG]

[+] EMBL BM418542             [GGAACGCCCCTTCCCAAGCCTTTGGTGCACCTGTCAGGTGAAGGAGGCCCAAAAGAAACTTGTCTTAACCGGTTCTATGCTCATGTGGGAAGCCACAGGAGAAGAAACAGCTCAGCGCGATGTTGGATGAGGATCCCNCTTTGATGGAGAAGAGGGATTCCTTAGTCAAGAGGCTAGAGCTGTACCAATCTGCCCGGAACCGAGATCGACTCACGTCGCGTGGAAATGATCGGTTAGCGAAGTCACCACGCTGGAAGAGATAGACATACACTCTGCGACACACCAGATCACTTGCCGCTAGAATGCTCTAATTCCACTTTACGTCTGGATTCACCACTGGAGATCCGCTACACCTATTCTTTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACCAGTATATTTCCTTGGCCACTCTTGG]


>consensus_14624#4 GGAACGCCCCTTCCCAAGCCTTTGGTGCACCTGTCAGGTGAAGGAGGCCCAAAAGAAACT TGTCTTAACCGGTTCTATGCTCATGTGGGAAGCCACAGGAGAAGAAACAGCTCAGCGCGA TGTTGGATGAGGATCCCNCTTTGATGGAGAAGAGGGATTCCTTAGTCAAGAGGCTAGAGC TGTACCAATCTGCCCGGAACCGAGATCGACTCACGTCGCGTGGAAATGATCGGTTAGCGA AGTCACCACGCTGGAAGAGATAGACATACACTCTGCGACACACCAGATCACTTGCCGCTA GAATGCTCTAATTCCACTTTACGTCTGGATTCACCACTGGAGATCCGCTACACCTATTCT TTCTTTCTTTTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACCAGTATATTTCCT TGGCCACTCTTGG



consensusID : consensus_14624#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence
                              [GCCAAAATGGCCAAGGAAATATACTTGTCTGACAAGGTAAAAAGGACCCTCCCTTGAAAAAAAAAAAAAAGAAAGAATTGTGTCCGGATCTCCATGTGAATCCAAACGTAAATGGAATTAAAGCATTCTACGGCAATGATCTGGGGGTCCCAAATGTATGTTTATTTTTTCCAGCTGGGACTTCGCTAACCGATCATTTCCACCCGACTGAGT]

[+] EMBL CF331308             [GCCAAAATGGCCAAGGAAATATACTTGTCTGACAAGGTAAAAAGGACCCTCCCTTGAAAAAAAAAAAAAAGAAAGAATTGTGTCCGGATCTCCATGTGAATCCAAACGTAAATGGAATTAAAGCATTCTACGGCAATGATCTGGGGGTCCCAAATGTATGTTTATTTTTTCCAGCTGGGACTTCGCTAACCGATCATTTCCACCCGACTGAGT]


>consensus_14624#5 GCCAAAATGGCCAAGGAAATATACTTGTCTGACAAGGTAAAAAGGACCCTCCCTTGAAAA AAAAAAAAAAGAAAGAATTGTGTCCGGATCTCCATGTGAATCCAAACGTAAATGGAATTA AAGCATTCTACGGCAATGATCTGGGGGTCCCAAATGTATGTTTATTTTTTCCAGCTGGGA CTTCGCTAACCGATCATTTCCACCCGACTGAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14624#0      ACAGGAATGTCGACATGCTAGCAGCAAGACGCAAAGAAAAGGAGTACTTTGAAAGTAGCC 60
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      ------------------------------------------------------------
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      ------------------------------------------------------------
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      CAGATTATGGTCACTTGGCACATAAAATGGGTGCAGAGTACCTTGCTAAGCTTCTGTCTC 120
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      ------------------------------------------------------------
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      ------------------------------------------------------------
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      AGCACTTAGAGGCTGTGATCAGAGCAAAAATTCCAAGTATTATAGCCATGATTAACAAAA 180
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      ------------------------------------------------------------
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      ------------------------------------------------------------
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      CAATTGATGAAATTGAAGCTGAGTTGGATCGCCTTGGTAGGCCAATTGGAGGTGATGCTG 240
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      ------------------------------------------------------------
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      ------------------------------------------------------------
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      GGGCACAACTGTACACAATATTGGACATGTGTCGTGCGTTTGACCGAGTTTTTAAAGAGC 300
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      ------------------------------------------------------------
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      -------------------CTTCAGTTGATGCGGTTCATTTGGTCTTGAAGGATCTTGTT 41
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      ACCTAGATGGCGGTCGGCCAGGTGGAGATCGTATTTATGGTGTCTTTGACCACCAATTAC 360
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      ------------------------------------------------------------
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      CGTAGATCGATTGCAGCAACAGAGGAGTTGAAGCGTTTCCCAACACTTCAGACAGATATA 101
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      CAGCAGCACTGAAAAAGCTTCCATTTGATAAGCATCTTTCATTGCAAAATGTTCGGAAAG 420
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      ------------------------------------------------------------
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      GCTGCTGCAGCAAATGAAAGCCTGGAAAGATTTCGTGAGGATGGTCGAAAGACAGTTATT 161
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      TCATTTCAGAGGCTGATGGTTATCAACCCCACTTGATTGCCCCTGAGCAAGGGTACAGAA 480
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      -----------------CTCTTTTAATGGAGCCCACTCCTTACCTTAGATTTTCAAGAAC 43
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      CGTCTTGTTGAGATGGAGGCCAGCTACCTAACTGTAGAATTTTTCAGAAAACTCCCTACA 221
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      GGCTTATAGATAGTTCGCTCCACTACTTCAGGGGTCCAGCGGAAGCTTCAGTTGATGCGG 540
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      NCCTCAGACCAATAAGGGCCTAATAATACACTCCACCTTGCCAGATATCAGC-CACCCAT 102
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      GAACCAGATAAGGGGGCTAATAATAACACTCCAGCCAATGACAGATATCAGGACAACCAT 281
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      TTCATTTGGTCTTGAAGGAACTNGTTCGTAGATCGATTGCAGCAACAGAGGAAGTGAAGC 600
consensus_14624#3      ------------------------------------------------------------
consensus_14624#2      TTAAGAAGAATCGGGTCAAAATGTATCATCTTACATTAAACATGTTTGTGAGACCATTTG 162
consensus_14624#4      ------------------------------------------------------------
consensus_14624#1      TTAAGAAGAATCGGGTCAAA-TGTATCATCTTACATTAACATGGTTTGTGAGAC-ATTGA 339
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      GTTTCCCAACACTTCAGACAGATATAGCTGCTG-CAGCANATGAAAGCCTGGAAAAGATT 659
consensus_14624#3      -----------------ACAGATATAGCTGCTG-CA-CAAATGAAAGCCTGGAAAGATTT 41
consensus_14624#2      AGGGAACACCATTCCAAAC-TGTGGTGCAC-TGTCAAGTGAAGGAG--CCAAAAGAAACT 218
consensus_14624#4      GGAACGCCCCTTCCCAAGCCTTTGGTGCACCTGTCAGGTGAAGGAGGCCCAAAAGAAACT 60
consensus_14624#1      GGAACAC-CATTCCAAAAGCTGTGGTGCAC-TGTCAAGTGAAGGAGG-CAAAAAGAAACT 396
consensus_14624#5      --------------------------------GCCAAAATGGCCAAG---GAAATATACT 25
                                                       * **        *       **     *

consensus_14624#0      CGTGAGGATGGGTCGAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAACTACCTAACT 719
consensus_14624#3      CGTGAGGATGGTCGAAAGACAGTTATTCGTCTTGTTGAGATGGAGGCCAGCTACCTAACT 101
consensus_14624#2      TG-CTTAACCT-TTCTATGC--TCATGTGGGAAGCAA----GGAGAAGAAACAGCTCAGC 270
consensus_14624#4      TGTCTTAACCGGTTCTATGC--TCATGTGGGAAGCCACA--GGAGAAGAAACAGCTCAGC 116
consensus_14624#1      TG-CTTAACCGTTTCTATGC--TCATGTGGGAAGCAA----GGAGAAGAAACAGCTCAGC 449
consensus_14624#5      TGTCTGACAAGGTAAAAAGGA--CCCTCCCTTGAAAAAAAAAAAAAAGAAAGAATTGTGT 83
                        *              *                          *    *   *  *    

consensus_14624#0      GTAGAATTTTTCAGAAAACTCCCTACAGAACCAGAATAGGGGGCTAATAATAACAACTCC 779
consensus_14624#3      GTAGAATTTTTCAGAAAACTCCCTACAGAACCAGATAAGGGGGCTAATAATAACA-CTCC 160
consensus_14624#2      GCGATGTTGGATGAGGATCCCGCTTT-GATGGAGAAGAGGGATTCCTTAGTCAAGAGGCT 329
consensus_14624#4      GCGATGTTGGATGAGGATCCCNCTTT-GATGGAGAAGAGGGATTCCTTAGTCAAGAGGCT 175
consensus_14624#1      GCGATGTTGGATGAGGATCCCGCTTT-GATGGAGAAGAGGGATTCCTTAGTCAAGAGGCT 508
consensus_14624#5      CCGGATCTCCATGTGAATCCAAACGTAAATGGAATTAAAGCATTCTACGGCAATGATCTG 143
                              *        * *         *   *    * *            *       

consensus_14624#0      AGCCAATGACAGATTTCAGGACAACCCATTTAAGAGGAAATCGGGTCAAATGTATCATTC 839
consensus_14624#3      AGCCA-TGACAGATATCAGGACAACC-ATTTAAGAAGAA-TCGGTAACAATTCAACATTC 217
consensus_14624#2      AGAGCTGTACAAATCTGCCCGGAAC-GAGATCGACTCA-GTCGCGTGGAAATGATCGGTT 387
consensus_14624#4      AGAGCTGTACCAATCTGCCCGGAACCGAGATCGACTCACGTCGCGTGGAAATGATCGGTT 235
consensus_14624#1      AGAGCTGTACAAATCTGCCCGGAAC-GAGATCGACTCA-GTCGCGTGGAAATGATCGGTT 566
consensus_14624#5      GG--GGTCCCAAATGTATGTTTATTTTTTCCAGCTGGGACTTCGCT--AACCGATCATTT 199
                        *       *  ** *      *                 *       **   * *  * 

consensus_14624#0      T------TACATTTAACAGGGGTTTGT-GAGAACATTGAGGAAACACATTTCCACAAAAG 892
consensus_14624#3      TATTTTGTTTCTTTAATGGCAATTGATTGAGTCAACTGTTCTAAGACCTCAACACAGAGG 277
consensus_14624#2      AGCGAAGT-CACA--GCTGGAAGAGATAGACATACA-TCTGCGACAC-CCAGATCA-TTG 441
consensus_14624#4      AGCGAAGT-CACCACGCTGGAAGAGATAGACATACACTCTGCGACACACCAGATCACTTG 294
consensus_14624#1      AGCGAAGT-CACA--GCTGGAAGAGATAGACATACA-TCTGCGACAC-ACAGATCA-TTG 620
consensus_14624#5      C--------CACCCGACTGAGT-------------------------------------- 213
                                         *                                         

consensus_14624#0      GC--TGGGGTGCACTTGTCAAGTGG------AAGGAGG--CAAAAAAGAAACTT-GGTTT 941
consensus_14624#3      TCA-CACGAAGTACTTAACAACTGACTTAATAAGCAGAATCTAAGATGTAACATAGGGTA 336
consensus_14624#2      CCG-TAGAATGCTCTAATT---CCA-TTTACGTCTGGATTCACA--TGGAG-ATCCG-TA 492
consensus_14624#4      CCGCTAGAATGCTCTAATT---CCACTTTACGTCTGGATTCACCACTGGAG-ATCCGCTA 350
consensus_14624#1      CCG-TAGAATGCTCTAATT---CCA-TTTACGTCTGGATTCACA--TGGAG-ATCCG-TA 671
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      TAACCGTTTTTTATGG-CTATTGGTGGGAGGCAAGGAGAAAA-----AAACACCTTCANC 995
consensus_14624#3      CTAGTGCCATTCACGTTCTGCTGAGTGCTGACACTAGCAACATGTCAAGATATGACCATA 396
consensus_14624#2      CAC-TATTCTTTCTTT-CTTTCTTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACA 550
consensus_14624#4      CACCTATTCTTTCTTT-CTTT-TTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACC 408
consensus_14624#1      CAC-TATTCTTTCTTT-CTTT-TTTCTTTCATGCGAGTGTCCTTTCTACCTTGTCAGACA 728
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      GGCGAATG---------------------------------------------------- 1003
consensus_14624#3      TGTGAATTTCGATGACAACAATTATGCGAACTAATTTTTTAAATCGACAAGTATATTCAT 456
consensus_14624#2      AGTATATTTCCTTG-CCA-TCTTG------------------------------------ 572
consensus_14624#4      AGTATATTTCCTTGGCCACTCTTGG----------------------------------- 433
consensus_14624#1      AGTATATTTCCTTGGCCA-TCTTGGCC--------------------------------- 754
consensus_14624#5      ------------------------------------------------------------
                                                                                   

consensus_14624#0      ----------
consensus_14624#3      GACAAAAAAA 466
consensus_14624#2      ----------
consensus_14624#4      ----------
consensus_14624#1      ----------
consensus_14624#5      ----------
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)