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Oryza sativa
cluster # 14632 cluster # 14632       Sequences # 17       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14632#0 length = 814 sequences # 9  
consensus_14632#1 length = 764 sequences # 5  
consensus_14632#2 length = 531 sequences # 2  
consensus_14632#3 length = 408 sequences # 1  

consensusID : consensus_14632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 814
fasta sequence
                              [CAAAGACTCGAGACTTCTCTACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCG-CGGA-CGGCGGAGAACTTCC-TGGCGCTGTGCGCGAGCGGCTACTACGA-CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC-TGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA-TGTCGA-TGGCGAACAGC-GGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCC-TCACCTCAACGGCCAC-TACACCGTGTTCGCCAA-GGTCATCCATGGATTCGAGGT-GCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGC-TCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGT-GGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGTGTGATCTATGGCTAAGTACATCAATTAAGCTAAAAAAAAAAAAAAA]

[+] EMBL CF291937             [CAAAGACTCGAGACTTCTCTACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCG CAGA CGGCGGAGAACTTCC TGGCGCTGTGCGCGAGCGGCTACTACGA CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC TGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA TGTCGA TGGCGAACAGC GGGCCCAACACCAACGGGATCCAGTTCTTCATCACCTACGCCAAGCAGCC TCACCTCAACGGCCAC TACACCGTGTTCGCCAA GGTCATCCATGGATTCGAGGT GCTCG                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK105360             [ AAAGACTCGAGACTTCTCTACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCG CGGA CGGCGGAGAACTTCC TGGCGCTGTGCGCGAGCGGCTACTACGA CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC TGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA TGTCGA TGGCGAACAGC GGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCC TCACCTCAACGGCCAC TACACCGTGTTCGCCAA GGTCATCCATGGATTCGAGGT GCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGC TCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGT GGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCA                                                                                                          ]
[+] EMBL AU065301             [           GACTTCTCTACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCG CGGA CGGCGGAGAACTTCC TGGCGCTGTGC CGAGCGGCTACTACGA CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC TGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA TGTCGA TGGCGAACAGC GGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCC TCACCTCAACGGCCAC TACACCGTGTTCGCCAA GGTCATCCATGGATTCGAGGT GCTCGACCT                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU065303             [           GACTTCTCTACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCG CGGA CGGCGGAGAACTTCC TGGCGCTGTGCGCGAGCGGCTACNACGA CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC TGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA TGTCGA TGGCGAACAGC GGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTTCACCTCAACGGCCACTTANACCGTGTTCGCCAA GGTCATCCATGGATTCGAGGT GCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGACCCCTCGCCGAGATCAGGC TCAACCGCGTNACCATCCACGNCAACCCTCTCGCCAACTAATCCTATCTACNCCATCTAGTTTAAAATCTTTGGA                                                                                                                                                                                                                                 ]
[+] EMBL CA754716             [                   TACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCG CGGA CGGCGGAGAACTTCC TGGCGCTGTGCGCGAGCGGCTACTACGA CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC TGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA TGTCGA TGGCGAACAGC GGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCC TCACCTCAACGGCCAC TACACCGTGTTCGCCAA GGTCATCCATGGATTCGAGGT GCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGC TCAACCGCGTCACCATCCACGCCAACCCTCTCGCC ACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGGATTCTGATTGCTTTTTTCTGTGTGGGATGTGTTGTGTTCTGCTGCTATCTGAATCT                                                                                                                                                                         ]
[+] EMBL BE040902             [                                        AACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCGNCGGA CGGCGGAGAACTTCC TGGCGCTGTGCGCGAGCGGCTACTACGA CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC TGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA TGTCGA TGGCGAACAGC GGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCC TCACCTCAACGGCCAC TACACCGTGTTCGCCAAGGGTCATCCATGGATTCGAGGTGGCTCGACCTCATGGAGAAAGCGCAAACGGNGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTTAAACCGCGT AACATNCACGCCAA CCTCTCGCC ACTAATNCTATCTA                                                                                                                                                                                                                                                          ]
[+] EMBL AU030008             [                                                AACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCG CGGA CGGGGAAGAACTTCC TGGCGCTGTGC CGAGCGGCTACTACGA CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCA CTCGATCTTGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTTATTGTCGATTNGCGAACAGCGGGGCCCAACACCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU078244             [                                                                                                                   GAGGTGTTNTGCGACCAGGC CNG CGGA CGGCGGA ANCTTCC T GCCCTGTNCGCGAGCGGNTACTACGA CGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC TGGGGGAAGAAGTTCGCCGACGANTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA TGTCGA TGGCGAACAGC GGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCC TCACCTCAACGGCCAC TACACCGTGTTCGCCAA GGTCATCCATGGATTCGAGGT GCTCGACCTCATGGNGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGC TCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGT GGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGTGTGATCTATGGCTAAGTACATCAATTAAGCTAAAAAAAAAAAAAAA]
[+] EMBL AU078243             [                                                                                                                   GAGGTGTTCTGCGACCAGGC CCG CGGACCGGCGGAGAACTTCCTTGGCGCTGTNCGCGAGCGGCTACTACGACCGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCCGACGGGCACGGGGAAGGGGGGCACCTCGATC TGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGCGGGGTGA TGTCGA TGGCGAACAGC GGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCC TCACCTCAACGGCCAC TACACCGTGTTCGCCAA GGTCATCCATGGATTCGAGGT GCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGC TCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGT GGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGTGTGATCTATGGCTAAGTACATCAATTAAGCTAAAAAAAAAAAAAAA]


>consensus_14632#0 CAAAGACTCGAGACTTCTCTACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCT CGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGT GTTCTGCGACCAGGCGCCGCGGACGGCGGAGAACTTCCTGGCGCTGTGCGCGAGCGGCTA CTACGACGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCC GACGGGCACGGGGAAGGGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGACGAGTTCAG GGAGTCGCTCAAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACAC CAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACAC CGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGAC GGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAA CCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTG CTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACAC CGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCAT CTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGTGTGATCTATGGC TAAGTACATCAATTAAGCTAAAAAAAAAAAAAAA



consensusID : consensus_14632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 764
fasta sequence
                              [TACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCGCGGACGGGGAAGAACTTCCTGGCGCTGTGC-CGAGCGGCTACTACGACGGGCACGGGGAAGGGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGC-GGGGTGATG-TCGATGGCGAACAGCGGGCCCA-ACACCAACGGGAGCCAGTTCTTCATCACCT-ACGCCAAGCAGCCTCACCTCAACGGCCAC-TACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACC-GCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGTGTGATCTATGGCTAAGTACATC-ATTAAGCTACTAAAAACTCTGGTTCTATAATAATTGACTTTTTTAGCGGC]

[+] EMBL C97137               [TACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCGCGGACGGGGAAGAACTTCCTGGCGCTGTGCNCGAGCGGCTACTACGACGGGCACGGGGAAGGGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGC GGGGTGATG TCGATGGCGAACAGCGGGCCCA ACACCAACGGGAGCCAGTTCTTCATCACCT ACGCCAAGCAGCCTCACCTCAACGGCCAC TACACCGTGTTCGCCAAAGTCATCCATNGATTCGAGGTTCTCGACTTCATGGAGAANGCGCA ACGGGGNCCGGCGACC GCCCCTTCGCCGANATt                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU077514             [TACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCGCGGACGGCGGAGAACTTCCTGGCGCTGTGC GGAGCGGCTACTACGACGGGCACGGGGAAGGGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCACAACGCCCGC GGGGTGATG TCGATGGCGAACAGCGGGCCCA ACACCAACGGGAGCCAGTTCTTCATCACCT ACGCCAAGCAGCCTCACCTCAACGGCCAC TACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACC                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI800407             [                                                                                                                                                                                                                                                ctACGCCCGCGGGGGTGATGCTCGATGGCGAACAGC GGCCCAGACACC ACGGGA CCA TTCTTCATCACCTGACGCCAAGCAGCCTCACCTCAACGGCCACTTACACCGTGTTC CCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCAGCCCCCTC CCGAGATCAGGCTCAACCGCGTCACCATCCACGCC ACCCTCTCGCC ACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTTTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTAC AACTGAGTCTGTAACTGATATCCC AAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGTGTGATCTATGGCTAAGTACATC ATTAAGCTACTAAAAA                                  ]
[+] EMBL AU078239             [                                                                                                                                                                                                                                                         C GGGGTGATG TCGATGGCGAACAGCGGGCCCA ACACCAACGGGAGCCAGTTCTTCATCACCT ACGCCAAGCAGCCTCACCTCAACGGCCAC TACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACC GCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAAaaa                                                                              ]
[-] EMBL AU225738             [                                                                                                                                                                                                                                                                                                                                                               GTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACC GCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGTGTGATCTATGGCTAAGTACATCAATTAAGCTACTACTCCCTCTGGTTCTATAATAATTGACTTTTTTAGCGGC]


>consensus_14632#1 TACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCTCGCCGCCGCCGCCATGTCG GTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGTGTTCTGCGACCAGGCGCCG CGGACGGGGAAGAACTTCCTGGCGCTGTGCCGAGCGGCTACTACGACGGGCACGGGGAAG GGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCAAGCAC AACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACACCAACGGGAGCCAGTTC TTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACACCGTGTTCGCCAAGGTC ATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGC CCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAA TCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGA TGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCT GTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTT TGTGATTGTGTTTTCATGTTTCAACTGGCTGTGTGATCTATGGCTAAGTACATCATTAAG CTACTAAAAACTCTGGTTCTATAATAATTGACTTTTTTAGCGGC



consensusID : consensus_14632#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 531
fasta sequence
                              [ACTACGACGGGCACGGGGAAGGGGGGCACCTCGATNTGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCCAAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU077513             [ACTACGACGGGCACGGGGAAGGGGGGCACCTCGATNTGGGGGAAGAAGTTCGCCGACGAGTTCAGGGAGTCGCTCCAAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97138               [                                                                                                     CGATGGCGAACAG NGGCCCAACACCAACGGGAGCCCATTCTTCATCACTTACGCCAAGCAGCNTCACCTCAACGGCCACTACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14632#2 ACTACGACGGGCACGGGGAAGGGGGGCACCTCGATNTGGGGGAAGAAGTTCGCCGACGAG TTCAGGGAGTCGCTCCAAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCC CAACACCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCA CTACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGC GCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCA CGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTC TGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAA GAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTG ATGCATCTGCAGACTTGGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14632#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence
                              [CTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGTAGCGTATCGTT]

[-] EMBL CF291936             [CTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACACCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTTTAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGTAGCGTATCGTT]


>consensus_14632#3 CTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACACCGTGTTCGCCAAGGT CATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGACGGGGCCCGGCGACCG CCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCAACCCTCTCGCCAACTA ATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATTGCTTTTTTCTGTGTGG ATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACACCGTACAAACTGAGTC TGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCATCTGCAGACTTGGGTT TAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGTAGCGTATCGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14632#0      CAAAGACTCGAGACTTCTCTACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCT 60
consensus_14632#1      -------------------TACGCTTCTCCTCGCCGCCGAAACGAAGCAACCCGTCGCCT 41
consensus_14632#2      ------------------------------------------------------------
consensus_14632#3      ------------------------------------------------------------
                                                                                   

consensus_14632#0      CGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGT 120
consensus_14632#1      CGCCGCCGCCGCCATGTCGGTGACGCTGCACACGAATCTCGGGGACATCAAGTGCGAGGT 101
consensus_14632#2      ------------------------------------------------------------
consensus_14632#3      ------------------------------------------------------------
                                                                                   

consensus_14632#0      GTTCTGCGACCAGGCGCCGCGGACGGCGGAGAACTTCCTGGCGCTGTGCGCGAGCGGCTA 180
consensus_14632#1      GTTCTGCGACCAGGCGCCGCGGACGGGGAAGAACTTCCTGGCGCTGTGC-CGAGCGGCTA 160
consensus_14632#2      ------------------------------------------------------------
consensus_14632#3      ------------------------------------------------------------
                                                                                   

consensus_14632#0      CTACGACGGCACCATCTTCCACCGCAACATCAAGGGGTTCATGATCCAGGGCGGCGACCC 240
consensus_14632#1      CTACGACGG--------------------------------------------------- 169
consensus_14632#2      -------------------------------------------------------ACTAC 5
consensus_14632#3      ------------------------------------------------------------
                                                                                   

consensus_14632#0      GACGGGCACGGGGAAGGGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGACGAGTTCAG 300
consensus_14632#1      -----GCACGGGGAAGGGGGGCACCTCGATCTGGGGGAAGAAGTTCGCCGACGAGTTCAG 224
consensus_14632#2      GACGGGCACGGGGAAGGGGGGCACCTCGATNTGGGGGAAGAAGTTCGCCGACGAGTTCAG 65
consensus_14632#3      ------------------------------------------------------------
                                                                                   

consensus_14632#0      GGAGTCGCTC-AAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACA 359
consensus_14632#1      GGAGTCGCTC-AAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACA 283
consensus_14632#2      GGAGTCGCTCCAAGCACAACGCCCGCGGGGTGATGTCGATGGCGAACAGCGGGCCCAACA 125
consensus_14632#3      ------------------------------------------------------------
                                                                                   

consensus_14632#0      CCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACA 419
consensus_14632#1      CCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACA 343
consensus_14632#2      CCAACGGGAGCCAGTTCTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACA 185
consensus_14632#3      ----------------CTTCATCACCTACGCCAAGCAGCCTCACCTCAACGGCCACTACA 44
                                       ********************************************

consensus_14632#0      CCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGA 479
consensus_14632#1      CCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGA 403
consensus_14632#2      CCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGA 245
consensus_14632#3      CCGTGTTCGCCAAGGTCATCCATGGATTCGAGGTGCTCGACCTCATGGAGAAGGCGCAGA 104
                       ************************************************************

consensus_14632#0      CGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCA 539
consensus_14632#1      CGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCA 463
consensus_14632#2      CGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCA 305
consensus_14632#3      CGGGGCCCGGCGACCGCCCCCTCGCCGAGATCAGGCTCAACCGCGTCACCATCCACGCCA 164
                       ************************************************************

consensus_14632#0      ACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATT 599
consensus_14632#1      ACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATT 523
consensus_14632#2      ACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATT 365
consensus_14632#3      ACCCTCTCGCCAACTAATCCTATCTACTCCATCTAGTTTAAAATCTTTGGAATTCTGATT 224
                       ************************************************************

consensus_14632#0      GCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACA 659
consensus_14632#1      GCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACA 583
consensus_14632#2      GCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACA 425
consensus_14632#3      GCTTTTTTCTGTGTGGATGTGTTGTGTTCTGCTGCTATCTGAATCTTTGTTGCAAGAACA 284
                       ************************************************************

consensus_14632#0      CCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCA 719
consensus_14632#1      CCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCA 643
consensus_14632#2      CCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCA 485
consensus_14632#3      CCGTACAAACTGAGTCTGTAACTGATATCCCAAAAAGTGTTTGGCTTCACGATTGATGCA 344
                       ************************************************************

consensus_14632#0      TCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGT--GTGATCTAT 777
consensus_14632#1      TCTGCAGACTTGGGTTTTGTGATTGTGTTTTCATGTTTCAACTGGCTGT--GTGATCTAT 701
consensus_14632#2      TCTGCAGACTTGGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------- 531
consensus_14632#3      TCTGCAGACTTGGGTTTAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGTAGCGTAT 404
                       *****************    *          *                           

consensus_14632#0      GGCTAAGTACATCAATTAAGCTAAAAAAAAAAAAAAA----------------------- 814
consensus_14632#1      GGCTAAGTACATCA-TTAAGCTACTAAAAACTCTGGTTCTATAATAATTGACTTTTTTAG 760
consensus_14632#2      ------------------------------------------------------------
consensus_14632#3      CGTT-------------------------------------------------------- 408
                                                                                   

consensus_14632#0      ----
consensus_14632#1      CGGC 764
consensus_14632#2      ----
consensus_14632#3      ----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)