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Oryza sativa
cluster # 14634 cluster # 14634       Sequences # 17       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14634#0 length = 782 sequences # 1  
consensus_14634#1 length = 552 sequences # 9  
consensus_14634#2 length = 412 sequences # 1  
consensus_14634#3 length = 399 sequences # 2  
consensus_14634#4 length = 356 sequences # 3  
consensus_14634#5 length = 103 sequences # 1  

consensusID : consensus_14634#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 782
fasta sequence
                              [TTGCCCTACGTCGAGTCGACGCGACGAGATTTGCGGCGGCGATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGGTTGCAGTCAAATTTGCCGCTTGATCTGATAGAGAAATTGATGGGGGAAGAAGAAATGATTCTGTGGAGACTAAGGCCACAACTTTATCTACAGGAATTGCTGTTTGGCTGTGTCTACCATGCCTTATATAACTTTGTGATGATATTCATACCATTAAATATTTTGCCTGATGATTAATAGGCATATATTAGAAGAAAGTTTAGCAAAAACACAAACTTTGATTGACAGTTAAACTCGGTACATTGTACAATTCGGTAACTAATGCAAGTATACATCCCATTATTTGAATTTTGCAACATTTGATGGATAACATAATAAACTTTTAGTTATCGTAGTTGTGTAATATAATTTTGCTTTCACGAGATCCTGCTAGTTTTCTGCTCACTACCTTGATTTGCTTTACCCTGATGGGCTTTTTTGTAGTGAAGATGTATAATTTCCTGTTCTCTCCTAGGAGGAATATCTGATAAAATCTTTGACAGTTCAACATAACCAATATATGCCCATAAACTCACCATAGGAGCCCCTAGATACAGCCAAACAAATTCGCCATTTTGGATCAGTCAATTTATTTTTACCTGTACTTTGTGATATGGCCCTTGGGCAAG]

[+] EMBL CB647498             [TTGCCCTACGTCGAGTCGACGCGACGAGATTTGCGGCGGCGATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGGTTGCAGTCAAATTTGCCGCTTGATCTGATAGAGAAATTGATGGGGGAAGAAGAAATGATTCTGTGGAGACTAAGGCCACAACTTTATCTACAGGAATTGCTGTTTGGCTGTGTCTACCATGCCTTATATAACTTTGTGATGATATTCATACCATTAAATATTTTGCCTGATGATTAATAGGCATATATTAGAAGAAAGTTTAGCAAAAACACAAACTTTGATTGACAGTTAAACTCGGTACATTGTACAATTCGGTAACTAATGCAAGTATACATCCCATTATTTGAATTTTGCAACATTTGATGGATAACATAATAAACTTTTAGTTATCGTAGTTGTGTAATATAATTTTGCTTTCACGAGATCCTGCTAGTTTTCTGCTCACTACCTTGATTTGCTTTACCCTGATGGGCTTTTTTGTAGTGAAGATGTATAATTTCCTGTTCTCTCCTAGGAGGAATATCTGATAAAATCTTTGACAGTTCAACATAACCAATATATGCCCATAAACTCACCATAGGAGCCCCTAGATACAGCCAAACAAATTCGCCATTTTGGATCAGTCAATTTATTTTTACCTGTACTTTGTGATATGGCCCTTGGGCAAG]


>consensus_14634#0 TTGCCCTACGTCGAGTCGACGCGACGAGATTTGCGGCGGCGATGGCTCTCCCGGCGTCGA GCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCG CCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGGTTGCAG TCAAATTTGCCGCTTGATCTGATAGAGAAATTGATGGGGGAAGAAGAAATGATTCTGTGG AGACTAAGGCCACAACTTTATCTACAGGAATTGCTGTTTGGCTGTGTCTACCATGCCTTA TATAACTTTGTGATGATATTCATACCATTAAATATTTTGCCTGATGATTAATAGGCATAT ATTAGAAGAAAGTTTAGCAAAAACACAAACTTTGATTGACAGTTAAACTCGGTACATTGT ACAATTCGGTAACTAATGCAAGTATACATCCCATTATTTGAATTTTGCAACATTTGATGG ATAACATAATAAACTTTTAGTTATCGTAGTTGTGTAATATAATTTTGCTTTCACGAGATC CTGCTAGTTTTCTGCTCACTACCTTGATTTGCTTTACCCTGATGGGCTTTTTTGTAGTGA AGATGTATAATTTCCTGTTCTCTCCTAGGAGGAATATCTGATAAAATCTTTGACAGTTCA ACATAACCAATATATGCCCATAAACTCACCATAGGAGCCCCTAGATACAGCCAAACAAAT TCGCCATTTTGGATCAGTCAATTTATTTTTACCTGTACTTTGTGATATGGCCCTTGGGCA AG



consensusID : consensus_14634#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 552
fasta sequence
                              [CCTCCTCCTTACCTTGCCCTAGGTCGAGTCGACGCGACGAGATTTGCGGCGGC-GATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCC---GCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAA-CTT--GGATGACCCTGCAAATAATATAAAAGACAGTC-ATGTTCCCTTGTTTGA-TTTTAATGTAGGTTTCT-CTTGCATGTAAACCCCA-GGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTAGCAG-TG--ATATAAATTCGTGGTCCTGAAAAAAGTTTGTCGTAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF327997             [CCTCCTCCTTACCTTGCCCTAGGTCGAGTCGACGCGACGAGATTTGCGGCGGC GATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCC   GCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAA CTT  GGATGACCCTGCAAATAATATAAAAGACAGTC ATGTTCCCTTGTTTGA TTTTAATGTAGGTTTCT CTTGCATGTAAACCCCA GGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTaaaaaaa                                                                                          ]
[+] EMBL C73386               [ CTCCTCCTTACCTTGCCCTAGGTCGAGTCGACGCGACGAGATTTGCGGCGGC GATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGNC   GCCACCTGGGGCGTCTTCGCCGGCACCG CGCCATCTACCTCGTCCAGCCATTTNANTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTNTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAA CTTN GGATGACCCTGCAAATAATATAAAAGCCAGTCAATGTTCCCTTGGTTGATTTTTAATGTAGGGTTCT TTTGCATGTAAACCCCAGGGGGGGGAATGAang                                                                                                                                              ]
[-] EMBL CF327996             [ CTCCTCCTTACCTTGCCCTAGGTCGAGTCGACGCGACGAGATTTGCGGCGGC GATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACNGACATNGCCGCCGCCCGGGCCACCTGGGG TTTTTCGCCGGCACCGCCGCCATTTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTTTGAGTGAAGAGAA CTT  GGATGACCCTGCAAATAATATAAAAGACAGTC ATGTTCCCTTGTTTGA TTTTAATGTAGGTTTCT CTTGCATGTAAACCCCA GGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTTTTGGTTaaaaaaaa                                                                                         ]
[+] EMBL AU163679             [  TCCTCCTTACCTTGCCCTAGGTCGAGTCGACGCGACGAGATTTGCGGCGGC GATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCC   GCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAA CTT  GGATGACCCTGCAAATAATATAAAAGACAGTC ATGTTCCCTTGTTTGA TTTTAATGTAGGTTTCT CTTGCATGTAAACCCCA GGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAAaaa                                                                                                            ]
[+] EMBL AK063800             [    CTCCTTACCTTGCCCTAGGTCGAGTCGACGCGACGAGATTTGCGGCGGC GATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCC   GCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAA CTT  GGATGACCCTGCAAATAATATAAAAGACAGTC ATGTTCCCTTGTTTGA TTTTAATGTAGGTTTCT CTTGCATGTAAACCCCA GGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTAGCAG TG  ATATAAATTCGT                                         ]
[+] EMBL OSC21711             [              TGCCCTAGGTCGAGTCGACGCGACGAGATTTGNGGCGGC GATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGNC   GCCACCTGGGGCGTCTTCGNCGGCACCGNCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGNATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTNAAGAGAA CTTTGGGATGA                                                                                                                                                                                                                                             ]
[+] EMBL BI804468             [            ccgGCCCTAGCTCGAGTCGACGCGACGAGATTTGC GCGGC GATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCC   GCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCCGAGTGAAGAGAACCTT  GGATGACCCTGCAAATAATATAAAAGACAGTC ATGTTCCCTTGTTTGA TTTTAATGTAGGTTTCTCCTTGCATGTAAACCCCA GGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTAGCAG TGTTATATAAATTCGTGGTCCTGAAAAAA                            ]
[+] EMBL BI803899             [                        CGAGTCGACGCGACGAGATTTGCGGCGGCAGATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCC   GCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCCGAGTGAAGAGAA CTT  GGATGACCCTGCAAATAATATAAAAGACAGTC ATGTTCCCTTGTTTGA TTTTAATGTAGGTTTCT CTTGCATGTAAACCCCA GGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTACCAGCTGTTATATAAATTCGTGGTCCTGAAAAAA                            ]
[+] EMBL AU058264             [                                                                                                                                                                                                                                                                  TGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAA CTT  GGATGACCCTGCAAATAATATAAAAGACAGTC ATGTTCCCTTGTTTGA TTTTAATGTAGGTTTCT CTTGCATGTAAACCCCA GGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTAGCAG TG  ATATAAATTCGTGGTCCTGATGATTGTTTGTCGTAAAAAAAAAAAAAAAAAAA]


>consensus_14634#1 CCTCCTCCTTACCTTGCCCTAGGTCGAGTCGACGCGACGAGATTTGCGGCGGCGATGGCT CTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCC ACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTC GTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAA GTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTC TGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGT TTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATT GAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCT TTTTCTTGGTTTAGCAGTGATATAAATTCGTGGTCCTGAAAAAAGTTTGTCGTAAAAAAA AAAAAAAAAAAA



consensusID : consensus_14634#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence
                              [GAGTCGACGCGACGAGATTTGCGGCGGCGATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTAAAAAAAAAAAA]

[+] EMBL CA755291             [GAGTCGACGCGACGAGATTTGCGGCGGCGATGGCTCTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTAAAAAAAAAAAA]


>consensus_14634#2 GAGTCGACGCGACGAGATTTGCGGCGGCGATGGCTCTCCCGGCGTCGAGCTCCGGCCTCT TCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCCGCCACCT GGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGA AAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGC AACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCC TGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTG CATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTAAAAAAAAAAAA



consensusID : consensus_14634#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 399
fasta sequence
                              [ACGAGATTTGCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU077954             [ACGAGATTTGCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTAT                                       ]
[+] EMBL AU077955             [                                                                                                                                                                    GAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGNCCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14634#3 ACGAGATTTGCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCCACCGACA TCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTCGTCCAGC CATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCC AGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGA AGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTT TAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTAT TTCTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14634#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 356
fasta sequence
                              [GTCCAGGTCAGGGGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTAGCAGTGATATAAATTCGTGGTCCTGAAAAAAAAAA]

[+] EMBL CB001049             [GTCCAGGTCAGGGGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTAGCAGTGATATAAATTCGTGGTCCTGAAAAAAAAAA]
[+] EMBL CB001059             [GTCCAGGTCAGGGGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTAGCAGTGATATAAATTCGTGGTCCTGAAAAAAAAAA]
[+] EMBL C98355               [                                                                                        GCTGCAACTTTTGATACATTTACGTTTCCGGGATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGTTCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTAGCNGTGATATAAATTCGTGGTCCTGAAAAntt   ]


>consensus_14634#4 GTCCAGGTCAGGGGCCATTTGACTGGATTAAGAAAACTTTCTTTGAGAAACCCGAACCAG AGGCATAAGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACATTTACGTTTCCGGG ATGATTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGTCATGT TCCCTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATG ATTATATTGAGTTATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAG CGAAACCTTTTTCTTGGTTTAGCAGTGATATAAATTCGTGGTCCTGAAAAAAAAAA



consensusID : consensus_14634#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 103
fasta sequence
                              [TTTAGCAGTGTTATATAAATTCGTGGTCCTGATGATTGTTTGTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OS38042              [TTTAGCAGTGTTATATAAATTCGTGGTCCTGATGATTGTTTGTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14634#5 TTTAGCAGTGTTATATAAATTCGTGGTCCTGATGATTGTTTGTCGTAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14634#2      -------------------------GAGTCGACGCGACGAGATTTGCGGCGGCGATGGCT 35
consensus_14634#3      ------------------------------------------------------------
consensus_14634#1      CCTCCTCCTTACCTTGCCCTAGGTCGAGTCGACGCGACGAGATTTGCGGCGGCGATGGCT 60
consensus_14634#4      ------------------------------------------------------------
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      -------------TTGCCCTACGTCGAGTCGACGCGACGAGATTTGCGGCGGCGATGGCT 47
                                                                                   

consensus_14634#2      CTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCC 95
consensus_14634#3      ------ACGA-GATTTGCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCC 53
consensus_14634#1      CTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCC 120
consensus_14634#4      ------------------------------------------------------------
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      CTCCCGGCGTCGAGCTCCGGCCTCTTCCGCTTCATCTCTCCACGGCGCCGCCCCCAGTCC 107
                                                                                   

consensus_14634#2      ACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTC 155
consensus_14634#3      ACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTC 113
consensus_14634#1      ACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTC 180
consensus_14634#4      ---------------------------------------------------GTCCAGGTC 9
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      ACCGACATCGCCGCCGCCGCCACCTGGGGCGTCTTCGCCGGCACCGCCGCCATCTACCTC 167
                                                                                   

consensus_14634#2      GTCCAGCCATTTGACTGGATTAA-GAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATA 214
consensus_14634#3      GTCCAGCCATTTGACTGGATTAA-GAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATA 172
consensus_14634#1      GTCCAGCCATTTGACTGGATTAA-GAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATA 239
consensus_14634#4      AGG-GGCCATTTGACTGGATTAA-GAAAACTTTCTTTGAGAAACCCGAACCAGAGGCATA 67
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      GTCCAGGTTGCAGTCAAATTTGCCGCTTGATCTGATAGAGAAATTGATGGGGGAAGAAGA 227
                                                                                   

consensus_14634#2      AGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACAT---TTACGTTTCCGGGATGA 271
consensus_14634#3      AGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACAT---TTACGTTTCCGGGATGA 229
consensus_14634#1      AGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACAT---TTACGTTTCCGGGATGA 296
consensus_14634#4      AGTCTGCCAGGCATATGGAAGGCTGCAACTTTTGATACAT---TTACGTTTCCGGGATGA 124
consensus_14634#5      --TTTAGCAGTGTTATATAAATTCGTGG-TCCTGATGATT---GTTTGTCGTAAAAAAAA 54
consensus_14634#0      AATGATTCTGTGGAGACTAAGGCCACAACTTTATCTACAGGAATTGCTGTTTGGCTGTGT 287
                         *    * *        **         *     *        *               

consensus_14634#2      TTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGT-CATGTTCC 330
consensus_14634#3      TTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGT-CATGTTCC 288
consensus_14634#1      TTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGT-CATGTTCC 355
consensus_14634#4      TTTCTGAGTGAAGAGAACTTGGATGACCCTGCAAATAATATAAAAGACAGT-CATGTTCC 183
consensus_14634#5      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 103
consensus_14634#0      CTACCATGCCTTATATAACTTTGTGATGATATTCATACCATTAAATATTTTGCCTGATGA 347
                                       *        *        * *  *  *** *             

consensus_14634#2      CTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATT 390
consensus_14634#3      CTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATT 348
consensus_14634#1      CTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATT 415
consensus_14634#4      CTTGTTTGATTTTAATGTAGGTTTCTCTTGCATGTAAACCCCAGGAGGGGAATGATGATT 243
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      TTAATAGGCATATATTAGAAGAAAGTTTAGCA---AAAACACAAACTTTGATTGACAGTT 404
                                                                                   

consensus_14634#2      ATATTGAGT-TA-----------AAAAAAAAAAA-------------------------- 412
consensus_14634#3      ATATTGAGT-TATTTCTCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------- 399
consensus_14634#1      ATATTGAGT-TATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCG 474
consensus_14634#4      ATATTGAGT-TATTTCTCATCTCAGCGAAACCTTTTTCTTGGTTTTTTCTCATCTCAGCG 302
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      AAACTCGGTACATTGTACAATTCGGTAACTAATGCAAGTATACATCCCATTATTTGAATT 464
                                                                                   

consensus_14634#2      ------------------------------------------------------------
consensus_14634#3      ------------------------------------------------------------
consensus_14634#1      AAACCTTTTTCTTGGTTTAGCAGTGATATAAATTCGTGGTCCTGAAAAAAGTTTGTCGTA 534
consensus_14634#4      AAACCTTTTTCTTGGTTTAGCAGTGATATAAATTCGTGGTCCTGAAAAAAAAAA------ 356
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      TTGCAACATTTGATGGATAACATAATAAACTTTTAGTTATCGTAGTTGTGTAATATAATT 524
                                                                                   

consensus_14634#2      ------------------------------------------------------------
consensus_14634#3      ------------------------------------------------------------
consensus_14634#1      AAAAAAAAAAAAAAAAAA------------------------------------------ 552
consensus_14634#4      ------------------------------------------------------------
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      TTGCTTTCACGAGATCCTGCTAGTTTTCTGCTCACTACCTTGATTTGCTTTACCCTGATG 584
                                                                                   

consensus_14634#2      ------------------------------------------------------------
consensus_14634#3      ------------------------------------------------------------
consensus_14634#1      ------------------------------------------------------------
consensus_14634#4      ------------------------------------------------------------
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      GGCTTTTTTGTAGTGAAGATGTATAATTTCCTGTTCTCTCCTAGGAGGAATATCTGATAA 644
                                                                                   

consensus_14634#2      ------------------------------------------------------------
consensus_14634#3      ------------------------------------------------------------
consensus_14634#1      ------------------------------------------------------------
consensus_14634#4      ------------------------------------------------------------
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      AATCTTTGACAGTTCAACATAACCAATATATGCCCATAAACTCACCATAGGAGCCCCTAG 704
                                                                                   

consensus_14634#2      ------------------------------------------------------------
consensus_14634#3      ------------------------------------------------------------
consensus_14634#1      ------------------------------------------------------------
consensus_14634#4      ------------------------------------------------------------
consensus_14634#5      ------------------------------------------------------------
consensus_14634#0      ATACAGCCAAACAAATTCGCCATTTTGGATCAGTCAATTTATTTTTACCTGTACTTTGTG 764
                                                                                   

consensus_14634#2      ------------------
consensus_14634#3      ------------------
consensus_14634#1      ------------------
consensus_14634#4      ------------------
consensus_14634#5      ------------------
consensus_14634#0      ATATGGCCCTTGGGCAAG 782
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)