These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1784 fasta sequence [GCTGCCGGGGGCCGCCTCGTCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCACTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTTCCCCTCGCGCAGGGTGCAGCCGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAACGTCGCTGAGCACCGTCTCCGCCGCCCGCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCCCCTCGCGCTGCCGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAGGGGCTTCAAGGCGGACGCGGAG-AAAGCGAGGAGGTGAGTGCTCCTCTCCTCTTCCCTTCTCGGTTCTCTTATGTCTGCGAGGAACGGTGCCTCGTCGCCGTTGTCGCCGTCGTCCCGCTGGCTGGCACCGCCCTTTCCCCTCTCCCCGTCGAGTCATCCTCTCCGACGCGGCCCCTTCCTCCTCTTCATCGGATGGGGTGAGGAGCTCGGCAGCGGCAACGAGTTCGACCTCGGCAGACCGGGCAACGACGTATTTGCTATTATTGTGCAGAAGAAAGGGGACCGATATGTATGCAAATGCAGACTTGCAGAGAGAGAAAGAGAGAGAGCCATGGCGCATCGTTCCCCCTTTCATTTCACTTTACCTCTTGCATTTTTGCTGCATCTCTGGCCCTCAAGGCGGCTGCTGCTGCTTGGCCGGTGCGCCTCTTTAATTCGATATATCGATCGTTTCTTTTTCAATGATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGCCAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTGATGACAAAAGCTACAATTATTCAGTGTTGTCGTTCTCTCCTGCAGGAAAAATACCAAGAGTGCGATGACTTACCGTGGCACGCCGTGAAAAGCTGAGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAGTGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAATGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGAGGAGGTCAGAGCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAAC-AAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTACTAATCATGATTGTTGATGCTTGTGTATTCTTTTACTGTAATCGACTCAAGGGCTCAAGGCTGTTGTCTGCATTTTTTCTTGTGATGAACAAAGAATGGAAGACGCCATTGA] [+] EMBL AU162278 [GCTGCCGGGGGCCGCCTCGTCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCACTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTTCCCCTCGCGCAGGGTGCAGCCGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAANGTCGCTGAGCACCGTCTCCGCCGCCCGCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCCCCTCGCGCTGCNGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAAGGGNTTCAAGGCGGANGCGGAGAAAAGCGAGGANGTGA ] [+] EMBL CB639787 [GCTGCCGGGGGCCGCCTCGTCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCACTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTTCCCCTCGCGCAGGGTGCAGCCGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAACGTCGCTGAGCACCGTCTCCGCCGCCCGCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCCCCTCGCGCTGCCGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAGGGGCTTCAAGGCGGACGCGGAG AAAGCGAGGAGGTGAGTGCTCCTCTCCTCTTCCCTTCTCGGTTCTCTTATGTCTGCGAGGAATGGTGCCTCGTCGCCGTTGTCGCCGTCGTCCCGCTGGCTGGCACCGCCCTTTCCCCTCTCCCCGTCGAGTCATCCTCTCCGACGCGGCCCCTTCCTCCTCTTCATCGGATGGGGTGAGGAGCTCGGCAGCGGCAACGAGTTCGACCTCGGCAGACCGGGCAACGACGTATT ] [+] EMBL CB639762 [GCTGCCGGGGGCCGCCTCGTCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCACTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTTCCCCTCGCGCAGGGTGCAGCCGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAACGTCGCTGAGCACCGTCTCCGCCGCCCGCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCCCCTCGCGCTGCCGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAGGGGCTTCAAGGCGGACGCGGAG AAAGCGAGGAGGTGAGTGCTCCTCTCCTCTTCCCTTCTCGGTTCTCTTATGTCTGCGAGGAATGGTGCCTCGTCGCCGTTGTCGCCGTCGTCCCGCTGGCTGGCACCGCCCTTTCCCCTCTCCCCGTCGAGTCATCCTCTCCGACGCGGCCCCTTCCTCCTCTTCATCGGATGGGGTGAGGAGCTCGGCAGCGGCAACGAGTTCGACCTCGGCAGACCGGGCAACGACGTA ] [+] EMBL CB636293 [ TGCCGGGGGCCGCCTCGTCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCACTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTCCCCCTCGCGCAGGGTGCAGCCGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAACGTCGCTGAGCACCGTCTCCGCCGCCCGCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCCCCTCGCGCTGCCGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAGGGGCTTCAAGGCGGACGCGGAG AAAGCGAGGAGGTGAGTGCTCCTCTCCTCTTCCCTTCTCGGTTCTCTTATGTCTGCGAGGAACGGTGCCTCGTCGCCGTTGTCGCCGTCGTCCCGCTGGCTGGCACCGCCCTTTCCCCTCTCCCCGTCGAGTCATCCTCTCCGACGCGGCCCCTTCCTCCTCTTCATCGGATGGG ] [+] EMBL CB636399 [ TGCCGGGGGCCGCCTCGTCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCACTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTCCCCCTCGCGCAGGGTGCAGCCGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAACGTCGCTGAGCACCGTCTCCGCCGTCCGCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCCCCTCGCGCTGCCGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAGGGGCTTCAAGGCGGACGCGGAG AAAGCGAGGAGGTGAGTGCTCCTCTCCTCTTCCCTTCTCGGTTCTCTTATGTCTGCGAGGAACGGTGCCTCGTCGCCGTTGTCGCCGTCGTCCCGCTGGCTGGCACCGCCCTTTCCCCTCTCCACGTTGAGTCAT ] [+] EMBL AK073119 [ CTCGTCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCACTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTTCCCCTCGCGCAGGGTGCAGCCGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAACGTCGCTGAGCACCGTCTCCGCCGCCCGCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCCCCTCGCGCTGCCGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAGGGGCTTCAAGGCGGACGCGGAG AAAGCGAGGAGGTGAGTGCTCCTCTCCTCTTCCCTTCTCGGTTCTCTTATGTCTGCGAGGAACGGTGCCTCGTCGCCGTTGTCGCCGTCGTCCCGCTGGCTGGCACCGCCCTTTCCCCTCTCCCCGTCGAGTCATCCTCTCCGACGCGGCCCCTTCCTCCTCTTCATCGGATGGGGTGAGGAGCTCGGCAGCGGCAACGAGTTCGACCTCGGCAGACCGGGCAACGACGTATTTGCTATTATTGTGCAGAAGAAAGGGGACCGATATGTATGCAAATGCAGACTTGCAGAGAGAGAAAGAGAGAGAGCCATGGCGCATCGTTCCCCCTTTCATTTCACTTTACCTCTTGCATTTTTGCTGCATCTCTGGCCCTCAAGGCGGCTGCTGCTGCTTGGCCGGTGCGCCTCTTTAATTCGATATATCGATCGTTTCTTTTTCAATGATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGCCAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTGATGACAAAAGCTACAATTATTCAGTGTTGTCGTTCTCTCCTGCAGGAAAAATACCAAGAGTGCGATGACTTACCGTGGCACGCCGTGAAAAGCTGAGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAGTGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAATGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCTATTGAAAATCGTTATAAAAATGAGGAGGTCAGAGCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAAC AAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTACTAATCATGATTGTTGATGCTTGTGTATTCTTTTACTGTAATCGACTCAAGGGCTCAAGGCT ] [+] EMBL CB665756 [ TCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCACTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTTCCCCTCGCGCAGGGTGCAGCCGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAACGTCGCTGAGCACCGTCTCCGCCGCCCGCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCCCCTCGCGCTGCCGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAGGGGCTTCAAGGCGGACGCGGAG AAAGCGAGGAGGTGAGTGCTCCTCTCCTCTTCCCTTCTCGGTTCTCTTATGTCTGCGAGGAACGGTGCCTCGTCGCCGTTGTCGCCGTCGTCCCGCTGGCTGGCACCGCCCTTTCCCCTCTCCCCGTCGAGTCATCCTCTCCGACGCGGCCCCTTCCTCCTCTTCATCGGATGGGGTGAGGAGCTCGGCAGCGGCAACGAGTTCGACCTCGGCAGACCGGGCAACGACGTATTTGCTATTATTGTGCAGAAGAAAGGGGACCGATATGTATGCAAATGCAGACTTGCAGAGAGAGAAAGAGAGAGAGCCATGGCGCATCGTTCCCCCTTTCATTTCACTTTACCTCTTGCATTTTTGCTGCATCTCTGGCCCTCAAGGCGGCTGCTGCTGCTTGGCCGGTGCGCCTCTTTAATTCGATATATCGATCGTTTCTTTTTCAATGATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCAC ] [-] EMBL CB664817 [ AGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAGTGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAATGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGAGGAGGTCAGAGCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAAC AAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGCCATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTACTAATCATGATTGTTGATGCTTGTGTATTCTTTTACTGTAATCGACTCAAGGGCTCAAGGCTGTTGTCTGCATTTTTTCTTGTGATGAACAAAGAATGGAAGACGCCATTGA] [-] EMBL CB664856 [ GATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAGTGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAATGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGAGGAGGTCAGAGCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAAC AAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTACTAATCATGATTGTTGATGCTTGTGTATTCTTTTACTGTAATCGACTCAAGGGCTCAAGGCTGTTGTCTGCATTTTTTATGGTGATGAACAAAGAATGGAAGACGCCATgat] [-] EMBL CB636294 [ AATCGTTATAAAAATGAGGAGGTCAGAGCTCAAACCACGAGGGATCTTTTTAAGTGCATTGTTGACCACAGGATGGGTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAAC AAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAATCATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTACTAATCATGATTGTTGA ] [-] EMBL CB639276 [ TACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAACAAAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTACTAATCATGATTGTTGATGCTTGTGTATTCTTTTACTGTAATCGACTCAAGGGCTCAAGGCTGTTGTCTGC TTTTTTCTTGTGATGAACAAAGAATAAAAGAC ] [-] EMBL CB639060 [ GTTGATCGTGCCCTTTGGTCCCATGGAATCAACGAAAAAAATAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTGTTATACGATCCGACTTTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTACTAATCATGATTGTTGATGCTTGTGTA TCTTTTACTGTAATCGACTCAAGGGCTCAAGGCTGTTGTCTGC TTTTTTCTTGTGATGAACAAA ] consensusID : consensus_14646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1052 fasta sequence [TGATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGCCAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTGATGACAAAAGCTACAATTATTCAGTGTTGTCGTTCTCTCCTGCAGGAAAAATACCAAGAGGTATAACCTCTTTGTAAATCTATCCGCGGTCCATTCTTCATGGTGCCAATCCTCCCTTCTCAGAGGGTAATTCTTTTCTGATTCATATGGTGCGATGACTTACCGTGGCACGCCGTGAAAAGCTGAGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAGTGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAATGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGAGGAGGTCAGAGCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTAGTAATCATGATTGTTGATGCTTGTGTATTCTTTTAAAAAAAAGA] [+] EMBL CB664855 [TGATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGCCAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTGATGACAAAAGCTACAATTATTCAGTGTTGTCGTTCTCTCCTGCAGGAAAAATACCAAGAGGTATAACCTCTTTGTAAATCTATCCGCGGTCCATTCTTCATGGTGCCAATCCTCCCTTCTCAGAGGGTAATTCTTTTCTGATTCATATGGTGCGATGACTTACCGTGGCACGCCGTGAAAAGCTGAGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAGTGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAATGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGAGGAGGTCAGAGCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAAGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCA ] [+] EMBL CB664816 [ GATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGCCAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTGATGACAAAAGCTACAATTATTCAGTGTTGTCGTTCTCTCCTGCAGGAAAAATACCAAGAGGTATAACCTCTTTGTAAATCTATCCGCGGTCCATTCTTCATGGTGCCAATCCTCCCTTCTCAGAGGGTAATTCTTTTCTGATTCATATGGTGCGATGACTTACCGTGGCACGCCGTGAAAAGCTGAGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAGTGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAATGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGAGGAGGTCAGAGCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGGTCTCCAGCAAGAGC ] [-] EMBL CB665757 [ TCCTCCCTTCTCAGAGGGTAATTCTTTTCTGATTCATATGGTGCGATGACTTACCGTGGCACGCCGTGAAAAGCTGAGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAGTGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAATGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGAGGAGGTCAGAGCTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATCCCAGAGGTGCGGTTTTCACTTGAAAACCCTACTAGTAATCATGATTGTTGATGCTTGTGTATTCTTTTAAAAAAAAGA] consensusID : consensus_14646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [GCAGACTTGCAGAGAGAGAAAGAGAGAGAGCCATGGCGCATCGTTCCCCCTTTCATTTCACTTTACCTCTTGCATTTTTGCTGCATCTCTGGCCCTCAAGGCGGCTGCTGCTGCTTGGCCGGTGCGCCTCTTTAATTCGATATATCGATCGTTTCTTTTTCAATGATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGCCAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTAAGCTTTCTGCTCTTGTTGATTACTAGCACACATGAAAGAGTCATGAACTAGTGTTCTTTACTTCTGATTAAATTGATGTGATATTTGTGTAGGGTGATGACAAAAGCTACAATTATTCAGTGGTTGTCGTTCTCTCCTGCAGGTGACGTATTATGCAATTTACTGTTTGCTGTAGTTTTACAGCGCCACTGCTCACACTCTGCTTTTGAAAGCAATATGTCTAATGGATTACATAAGGGAAAGGTCTATTGC] [+] EMBL CF323656 [GCAGACTTGCAGAGAGAGAAAGAGAGAGAGCCATGGCGCATCGTTCCCCCTTTCATTTCACTTTACCTCTTGCATTTTTGCTGCATCTCTGGCCCTCAAGGCGGCTGCTGCTGCTTGGCCGGTGCGCCTCTTTAATTCGATATATCGATCGTTTCTTTTTCAATGATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGCCAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTAAGCTTTCTGCTCTTGTTGATTACTAGCACACATGAAAGAGTCATGAACTAGTGTTCTTTACTTCTGATTAAATTGATGTGATATTTGTGTAGGGTGATGACAAAAGCTACAATTATTCAGTGGTTGTCGTTCTCTCCTGCAGGTGACGTATTATGCAATTTACTGTTTGCTGTAGTTTTACAGCGCCACTGCTCACACTCTGCTTTTGAAAGCAATATGTCTAATGGATTACATAAGGGAAAGGTCTATTGC] consensusID : consensus_14646#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [AGAGCTTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU029639 [AGAGCTTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGGCTGCCAAATCATTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCCGAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCCCAAGAATGTTGATCCTGCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTAGAAACATTGCAAGGCACAAGGGTTCTCCAGCAAGAGCGGATTCTAGCGGGGTTTCAGATCACATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGCGTTGTCAAGCCTGACATTTTGTAGCAATATACAGATGAGCGAGTTTCTGCTGACAGTCTTAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 GCTGCCGGGGGCCGCCTCGTCCTCCGCCTCTCCCCGCCGCCTCCACCTCCTCCGCCGCCA 60 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 CTGTGTCGTCCCCGTCCCCGGCTGCCTCCGCCTCCGCCTTCCCCTCGCGCAGGGTGCAGC 120 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 CGTCTCCGCCTCCTCCACCGCCGTCGCCGTCAACGTCGCTGAGCACCGTCTCCGCCGCCC 180 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 GCGTTCCGCCACCGTCCCTCCGTGCCGTACTAAGAGTAGGTGTATATGCCTCTTCCTCCC 240 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 CCTCGCGCTGCCGCCTCGGCCTCCCCGTTGCGCCGTCGCTGTCGCCGAGCAGGGGCTTCA 300 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 AGGCGGACGCGGAGAAAGCGAGGAGGTGAGTGCTCCTCTCCTCTTCCCTTCTCGGTTCTC 360 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 TTATGTCTGCGAGGAACGGTGCCTCGTCGCCGTTGTCGCCGTCGTCCCGCTGGCTGGCAC 420 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 CGCCCTTTCCCCTCTCCCCGTCGAGTCATCCTCTCCGACGCGGCCCCTTCCTCCTCTTCA 480 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 TCGGATGGGGTGAGGAGCTCGGCAGCGGCAACGAGTTCGACCTCGGCAGACCGGGCAACG 540 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 ACGTATTTGCTATTATTGTGCAGAAGAAAGGGGACCGATATGTATGCAAATGCAGACTTG 600 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 CAGAGAGAGAAAGAGAGAGAGCCATGGCGCATCGTTCCCCCTTTCATTTCACTTTACCTC 660 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ------------------------------------------------------------ consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 TTGCATTTTTGCTGCATCTCTGGCCCTCAAGGCGGCTGCTGCTGCTTGGCCGGTGCGCCT 720 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ----------------------------------TGATGCCTTAGTTTTAATATTTTACA 26 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 CTTTAATTCGATATATCGATCGTTTCTTTTTCAATGATGCCTTAGTTTTAATATTTTACA 780 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 TTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGC 86 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 TTGTGTGTCTGTTAATTCATCGGCGATATGATCTCATGGCCGGCTGCACATTGGCTCTGC 840 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 CAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTGATGAC 146 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 CAGAATCGATTCATTCGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTGATGAC 900 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 AAAAGCTACAATTATTCAGTGTTGTCGTTCTCTCCTGCAGGAAAAATACCAAGAGGTATA 206 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 AAAAGCTACAATTATTCAGTGTTGTCGTTCTCTCCTGCAGGAAAAATACCAAGAG----- 955 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 ACCTCTTTGTAAATCTATCCGCGGTCCATTCTTCATGGTGCCAATCCTCCCTTCTCAGAG 266 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 ------------------------------------------------------------ consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 GGTAATTCTTTTCTGATTCATATGGTGCGATGACTTACCGTGGCACGCCGTGAAAAGCTG 326 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 -------------------------TGCGATGACTTACCGTGGCACGCCGTGAAAAGCTG 990 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 AGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAG 386 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 AGATTGGCAGATGGCTCATTGGGTGTGATGCCGGCATGTCGGTTCTCAATATTACTGGAG 1050 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 TGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAA 446 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 TGCAAAGGGGTGCGAGCAAGGCTACATTGGACAAGGCGGTGCAACTATGAGCCGGGAGAA 1110 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 TGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGA 506 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 TGAAGATGCTTTCATGGATATGCTGCTTCTAGATCCCATTGAAAATCGTTATAAAAATGA 1170 consensus_14646#2 ----------------------------GCAGACTTGCAGAGAGAGAAAGAGAGAGAGCC 32 consensus_14646#1 GGAGGTCAGAGCT-CAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGG 565 consensus_14646#3 -------AGAGCTTCAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGG 53 consensus_14646#0 GGAGGTCAGAGCT-CAAGCCACGAGGGATCTTTCTAAGTGCATTGTTGACCACAGGATGG 1229 consensus_14646#2 ATGGCGCATCGTTCCCCCTTTCATTTCACTTTACCTCTTGCATTTTTGCTGCATCTCTGG 92 * * * * * * ** * ****** *** *** consensus_14646#1 CTGCCAAATCA-TTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCC 624 consensus_14646#3 CTGCCAAATCA-TTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCC 112 consensus_14646#0 CTGCCAAATCA-TTACCCACGCCTGAGCAATATGCTGTTGAAAGGGAGTGCACTAAAGCC 1288 consensus_14646#2 CCCTCAAGGCGGCTGCTGCTGCTTGGCCGGTGCGCCTCTTTAATTCGATATATCGA--TC 150 * *** * * * ** ** * * ** * ** * * * * consensus_14646#1 GAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCC-CAAGAATGTTGATCC 683 consensus_14646#3 GAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCC-CAAGAATGTTGATCC 171 consensus_14646#0 GAACAATGGCTATGGGAGAGGTCACAACTCCAGGAGTCCCTGCC-CAAGAATGTTGATCC 1347 consensus_14646#2 GT---TTCTTTTTCAATGATGCCTTAGTTTTAATATTTTACATTGTGTGTCTGTTAATTC 207 * * * * ** * * * * * * * * **** ** * consensus_14646#1 T---GCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTA 740 consensus_14646#3 T---GCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTA 228 consensus_14646#0 T---GCCCTTTGGTCCCATGAAATCAACAAAAAAAAAACACGAGTTGGACATGTTTTGTA 1404 consensus_14646#2 ATCGGCGATATGATCTCATGG--CCGGCTGCACATTGGCTCT-GCCAGAATCGATTCATT 264 ** * ** ** **** * * * * * * * ** * ** * consensus_14646#1 GAAACATTGCAAGGCACAAGGGTTCTCCAGCA----AGAGCGGATTCTAGCGGGGTTTCA 796 consensus_14646#3 GAAACATTGCAAGGCACAAGGGTTCTCCAGCA----AGAGCGGATTCTAGCGGGGTTTCA 284 consensus_14646#0 GAAACATTGCAAGGCACAAGGGTTCTCCAGCA----AGAGCGGATTCTAGCGGGGTTTCA 1460 consensus_14646#2 CGAGTATTGCATAAGCTATATATGCTATGGCACTTCAGTAAGCTTTCTGCTCTTGTTGAT 324 * ****** * * ** *** ** * **** *** consensus_14646#1 GATCA-CATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGC 855 consensus_14646#3 GATCA-CATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGC 343 consensus_14646#0 GATCA-CATGCATAAAACAGATAGAGGCTAGACATTTCTAGGATTTCGTAACTGAACAGC 1519 consensus_14646#2 TACTAGCACACATGAAAGAGTCATGAACTAGTGTTCTTTA----CTTCTGATTAAATTGA 380 * * ** *** *** ** * **** * * ** * * * * ** * consensus_14646#1 GTTGTCAAGCCTGACATTTTGTAGCAATATACA-GATGAGCGAGTTTCTGCTGACAGTCT 914 consensus_14646#3 GTTGTCAAGCCTGACATTTTGTAGCAATATACA-GATGAGCGAGTTTCTGCTGACAGTCT 402 consensus_14646#0 GTTGTCAAGCCTGACATTTTGTAGCAATATACA-GATGAGCGAGTTTCTGCTGACAGTCT 1578 consensus_14646#2 TGTGATATTTGTGTAGGGTGATGACAAAAGCTACAATTATTCAGTGGTTGTCGTTCTCTC 440 ** * ** * * *** * * ** * *** ** * consensus_14646#1 TATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATC 974 consensus_14646#3 TAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 428 consensus_14646#0 TATACGATCCGACTCTGTACCACAGTCAGCCCGCCATCGGGTGCCTGCATCTTGATAATC 1638 consensus_14646#2 CTGCAGGTGACGTATTATGCAATTTACTGTTTGCTGTAGTTTTACAGCGCCACTG----C 496 * consensus_14646#1 CCAGAGGTGCGGTTTTCACTTGAAAACCCTACTAGTAATCATGATTGTTGATGCTTGTGT 1034 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 CCAGAGGTGCGGTTTTCACTTGAAAACCCTACTACTAATCATGATTGTTGATGCTTGTGT 1698 consensus_14646#2 TCACACTCTGCTTTTGAAAGCAATATGTCTAATGGATTACATAAGGGAAAGGTCTATTGC 556 consensus_14646#1 ATTCTTTTAAAAAAAAGA------------------------------------------ 1052 consensus_14646#3 ------------------------------------------------------------ consensus_14646#0 ATTCTTTTACTGTAATCGACTCAAGGGCTCAAGGCTGTTGTCTGCATTTTTTCTTGTGAT 1758 consensus_14646#2 ------------------------------------------------------------ consensus_14646#1 -------------------------- consensus_14646#3 -------------------------- consensus_14646#0 GAACAAAGAATGGAAGACGCCATTGA 1784 consensus_14646#2 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||