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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1509 fasta sequence
[TCCTCGCGCAACAGCAGCGGGGCGGGGGCGGGGCGCGGCTTGGCGCGACGCCGAGTGGTGCATCCCGTGATTTCGCCGACGTCTTCGCCGCCCGCGGGGCGGGGGGCAGCAGCAGGAGGAGGAGGAGGAGGAGGGGGGAGGCATGGGGAACGCGAGCGGGCGGGAGGAGGACCCCGCGGCGGCGGCCGGGGAGGGGGACGTCGAGGACTCGTCGGTCCGGTCCTCGGAGCGCGGCTTCCCGCCGTACGGCGGAGGGGGCAACCACGTGCGGCGCGCGTGCTCGGTGGGCGTCGTCGGGGGCGGCGGGGGCGCCGGATCGCCGCCCGGGAGCCCCGGCCGCTCCCTCTCGCCGCGGATGTTCGTGCCCCAGACACCTGTGCCTCCACTCCAAAGAGCAGCTGATGTAACTCCAGTGTTCAACCGGATCTTAATGAATGAACAAGAAGAGGAATTTGATGGCCCCCCTCAAAAGGAAATTCCTGTCTTGATCGTGTGGACGCTTGGAGGAAAAAATGTATCTGTTGAAGGATCCTGGGATAACTGGAAATCAAGGAAACCCATGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGA-GGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC---GTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAACAAAAAGTAAAAAAGATGGCGAGGGATAAAGACCTGGAGGGGGGGCCGCGGCCCCAATGGGGCCTATAGGGAGGC]
[+] EMBL AK101800 [TCCTCGCGCAACAGCAGCGGGGCGGGGGCGGGGCGCGGCTTGGCGCGACGCCGAGTGGTGCATCCCGTGATTTCGCCGACGTCTTCGCCGCCCGCGGGGCGGGGGGCAGCAGCAGGAGGAGGAGGAGGAGGAGGGGGGAGGCATGGGGAACGCGAGCGGGCGGGAGGAGGACCCCGCGGCGGCGGCCGGGGAGGGGGACGTCGAGGACTCGTCGGTCCGGTCCTCGGAGCGCGGCTTCCCGCCGTACGGCGGAGGGGGCAACCACGTGCGGCGCGCGTGCTCGGTGGGCGTCGTCGGGGGCGGCGGGGGCGCCGGATCGCCGCCCGGGAGCCCCGGCCGCTCCCTCTCGCCGCGGATGTTCGTGCCCCAGACACCTGTGCCTCCACTCCAAAGAGCAGCTGATGTAACTCCAGTGTTCAACCGGATCTTAATGAATGAACAAGAAGAGGAATTTGATGGCCCCCCTCAAAAGGAAATTCCTGTCTTGATCGTGTGGACGCTTGGAGGAAAAAATGTATCTGTTGAAGGATCCTGGGATAACTGGAAATCAAGGAAACCCATGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGA GGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC GTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCA ]
[+] EMBL CB649796 [ CAGCACCTGGGCGGGGGCGGGGCGCGGCTTGGCGCGACGCCGAGTGGTGCATCCCGTGATTTCGCCGACGTCTTCGCCGCCCGCGGGGCGGGGGGCAGCAGCAGGAGGAGGAGGAGGAGGAGGGGGGAGGCATGGGGAACGCGAGCGGGCGGGAGGAGGACCCCGCGGCGGCGGCCGGGGAGGGGGACGTCGAGGACTCGTCGGTCCGGTCCTCGGAGCGCGGCTTCCCGCCGTACGGCGGAGGGGGCAACCACGTGCGGCGCGCGTGCTCGGTGGGCGTCGTCGGGGGCGGCGGGGGTACCGGATCCCAGGCCtcgacctt ]
[+] EMBL OSS14690A [ TGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGA GGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGNCCTTGGTCTAACCCA ]
[+] EMBL OSS15006A [ TGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCa ]
[-] EMBL CB649797 [ TTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGA GGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC GTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATA ]
[-] EMBL CB638631 [ CTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC GTTGTTATCGATGCTCA ]
[+] EMBL CA757085 [ ATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGGTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTGATTTTACTACTAACAAAAAGTAAAAAAGATGGCGAGGGATAAAGACCTGGAGGGGGGGCCGCGGCCCCAATGGGGCCTATAGGGAGGC]
[-] EMBL CF311955 [ AGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTC GTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTAaaaaa ]
consensusID : consensus_14650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 928 fasta sequence
[ATTTCGGCACGAGATCAAGGCAAACCCATGCAGAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTCGATGTTCATGATTTTGTCCCTGAAAGTGTTGAAAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGAAAAGGATT-TCTCCAAGAACCACCGGTTC-TTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGG-CCCTTGGTCTAAC-CCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG-CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTG-TAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAACAAAAAAAAAAAAAAA]
[+] EMBL AA751769 [ATTTCGGCACGAGATCAAGGCAAACCCATGCAGAATCTGGGAAAGATCATTCGCTCCTGTTGATACTTCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGATCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTCGATGTTCATGATTTTGTCCCTGAAAGTGTTGAAAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGAAAAGGATT TCTCCAAGAACCACCGGTTC TTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGGCCCAGCACATA TCCTCAACCACCTCTTCATCGAGAAA GCTGGGGTGCCCATCCGCTGGTGGCCCCTTGGTCTAAC CCCCAGGTTTGA TC AATATG ]
[-] EMBL CA759977 [ CTAGGTACAGTATCCAGGCACCCAGGGAAAAGGATTCTCAAAAAGAGCCACCGGTTC TTCCATCCCAACTCCATCTGGGTG TCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGG CCCTTGGTCTAAC CCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTG TAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAACAAAAAAAAAAAAAAA]
[+] EMBL BI811050 [ GGTTCTTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGG CCCTTGGTCTAAC CCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGA GCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTAaaaaaaaa ]
[+] EMBL BM037735 [ TGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGG CCCTTGGTCTAAC CCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG CCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTGCTAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTTATAAAAAA ]
[+] EMBL BM418826 [ CACATAGTCCTCAACCACCTCTTCATCGAGAAA GCT GGGTGCCCATCCACT GTGG CCCTTGGTCTAACACCACA GTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCG CCCTGGTTTGTTTACCTCCGAGGGGCC AAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTG TAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACT TAAAAAA ]
[+] EMBL BQ905948 [ GAAAGGCTGGGGTGCCCATCCGCTGGTGG CCCTTGGTCTAAC CCACAGGTTTGAGTCC AATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTG TAGAAAATACCACTTAGAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATTCTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAA ]
consensusID : consensus_14650#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[TGACTGGACTGAAGGAGTAGAAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGGTTTGTTTACCCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTATCGATGCTCAAAGTATGAAATGTGTAGAA]
[+] EMBL CF311954 [TGACTGGACTGAAGGAGTAGAAACCTTCTTGATGTTCATGATTTTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTAGCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCACAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGGTTTGTTTACCCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATATCAGCATTTCGTTGTTATCGATGCTCAAAGTATGAAATGTGTAGAA]
consensusID : consensus_14650#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[CCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCNCAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTNTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCNCAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU096674 [CCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCATCCCAACTCCATCTGGGTGTTCTCAACTCNCAGAACTCTGATGAAAGTTGTGCACGGCCCCAGCACATAGTCCTCAACCACCTNTTCATCGAGAAAGGCTGGGGTGCCCATCCGCTGGTGGCCCTTGGTCTAACCCNCAGGTTTGAGTCCAAATATGTAACCGTCGTCCTGTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAACTCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGAGTATTTCCGATAACTTGCAGGAACTTTGGTTGGTGTTGTACATGATGTACCATCATGATGTCTGGCGCCCTGGTTTGTTTACCTCCGAGGGGCCAAAGCATCATGAGTTTTTACAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14650#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence
[TCTTTTTCCCATGAGGTAAACACGTCTGCACACGCGAGACCCTTCTTGTGGCGCTTTGGGCTGTCTTGATACACACATAGANTGTTACCCCCACTTCACTGAGAGTCCTCGGCGCCCCTGGCTTTGTTATACACCTCTCCGAGAGGGGCCCACAAGCCACTTCCACTTGGAGGGTTTTTTTTTATACCCCACATATTTCCACGCCACATTTTCCCGGCGTTGTGGTTTCGNTTANTTCCAGAATGGGGCTTCCACAGGGGATATCTGAAACNTGCGTGTATGGAGAAATTACCCCACCTTAGAACCCGCTGGAAATCCCACCACGAGAATCTTAGGTGCCCACGAGTTAGATCCTTGTGATCCCACTAGAGTTCTTAATTATTTTGAACCGATGCCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAA]
[+] EMBL BQ908921 [TCTTTTTCCCATGAGGTAAACACGTCTGCACACGCGAGACCCTTCTTGTGGCGCTTTGGGCTGTCTTGATACACACATAGANTGTTACCCCCACTTCACTGAGAGTCCTCGGCGCCCCTGGCTTTGTTATACACCTCTCCGAGAGGGGCCCACAAGCCACTTCCACTTGGAGGGTTTTTTTTTATACCCCACATATTTCCACGCCACATTTTCCCGGCGTTGTGGTTTCGNTTANTTCCAGAATGGGGCTTCCACAGGGGATATCTGAAACNTGCGTGTATGGAGAAATTACCCCACCTTAGAACCCGCTGGAAATCCCACCACGAGAATCTTAGGTGCCCACGAGTTAGATCCTTGTGATCCCACTAGAGTTCTTAATTATTTTGAACCGATGCCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCATTTTACTACTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 TCCTCGCGCAACAGCAGCGGGGCGGGGGCGGGGCGCGGCTTGGCGCGACGCCGAGTGGTG 60
consensus_14650#1 ------------------------------------------------------------
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 CATCCCGTGATTTCGCCGACGTCTTCGCCGCCCGCGGGGCGGGGGGCAGCAGCAGGAGGA 120
consensus_14650#1 ------------------------------------------------------------
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 GGAGGAGGAGGAGGGGGGAGGCATGGGGAACGCGAGCGGGCGGGAGGAGGACCCCGCGGC 180
consensus_14650#1 ------------------------------------------------------------
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 GGCGGCCGGGGAGGGGGACGTCGAGGACTCGTCGGTCCGGTCCTCGGAGCGCGGCTTCCC 240
consensus_14650#1 ------------------------------------------------------------
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 GCCGTACGGCGGAGGGGGCAACCACGTGCGGCGCGCGTGCTCGGTGGGCGTCGTCGGGGG 300
consensus_14650#1 ------------------------------------------------------------
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 CGGCGGGGGCGCCGGATCGCCGCCCGGGAGCCCCGGCCGCTCCCTCTCGCCGCGGATGTT 360
consensus_14650#1 ------------------------------------------------------------
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 CGTGCCCCAGACACCTGTGCCTCCACTCCAAAGAGCAGCTGATGTAACTCCAGTGTTCAA 420
consensus_14650#1 ------------------------------------------------------------
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 CCGGATCTTAATGAATGAACAAGAAGAGGAATTTGATGGCCCCCCTCAAAAGGAAATTCC 480
consensus_14650#1 ------------------------------------------------------------
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 TGTCTTGATCGTGTGGACGCTTGGAGGAAAAAATGTATCTGTTGAAGGATCCTGGGATAA 540
consensus_14650#1 -----------------------------------------------------ATTTCGG 7
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 CTGGAAATCAAGGAAACCCATGCAGAAATCTGGGAAAGATCATTCGCTCCTGTTGATACT 600
consensus_14650#1 CACGAGATCAAGGCAAACCCATGCAGAATCTGGGAAAGATCATTCGCTCCTGTTGATACT 67
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 TCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGA 660
consensus_14650#1 TCCATCGGGAGTTTATCGTTACAGATTTGTTGTAGATGGAGAAAGGAAATGTCTTCCTGA 127
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ----------------TGACTGGACTGAAGGAGTAGAAACCTTCTT-GATGTTCATGATT 43
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 TCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTT-GATGTTCATGATT 719
consensus_14650#1 TCTTCCTTGTGAAACTGATATCATGGGCAACGCTGTTAACCTTCTTCGATGTTCATGATT 187
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 TTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTA 103
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 TTGTCCCTGAAAGTGTTGAGAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTA 779
consensus_14650#1 TTGTCCCTGAAAGTGTTGAAAGTGTGGCAGAATTTGAGCCTCCCCCATCCCCAGATTCTA 247
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 GCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCAT 163
consensus_14650#3 ------------------CCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCAT 42
consensus_14650#0 GCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCAAAAGAGCCACCGGTTCTTCCAT 839
consensus_14650#1 GCTACAGTATCCAGGCACCCGAGGAAAAGGATTTCTCCAA-GAACCACCGGTTCTTCCAT 306
consensus_14650#4 --------TCTTTTTCCCATGAGGTAAACACGTCTGCACACGCGAGACCCTTCTTGTGGC 52
**** *** * * * * *** * *
consensus_14650#2 -CCCAACTCCATCTGGGTGTTCTCA------ACTCACAGAACTCTGATGAAAGTTGTGCA 216
consensus_14650#3 -CCCAACTCCATCTGGGTGTTCTCA------ACTCNCAGAACTCTGATGAAAGTTGTGCA 95
consensus_14650#0 -CCCAACTCCATCTGGGTGTTCTCA------ACTCACAGAACTCTGATGAAAGTTGTGCA 892
consensus_14650#1 -CCCAACTCCATCTGGGTGTTCTCA------ACTCACAGAACTCTGATGAAAGTTGTGCA 359
consensus_14650#4 GCTTTGGGCTGTCTTGATACACACATAGANTGTTACCCCCACTTCACTGAGAGTCCTCGG 112
* * *** * * * ** * * *** *** *** *
consensus_14650#2 CGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCC-CATCC 275
consensus_14650#3 CGGCCCCAGCACATAGTCCTCAACCACCTNTTCATCGAGAAAGGCTGGGGTGCC-CATCC 154
consensus_14650#0 CGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCC-CATCC 951
consensus_14650#1 CGGCCCCAGCACATAGTCCTCAACCACCTCTTCATCGAGAAAGGCTGGGGTGCC-CATCC 418
consensus_14650#4 CGCCCCTGGCT-----TTGTTATACACCTCTCC---GAGAGGGGCCCACAAGCCACTTCC 164
** *** ** * * * ***** * * **** *** *** * ***
consensus_14650#2 GCTGGTGG---CCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCT 332
consensus_14650#3 GCTGGTGG---CCCTTGGTCTAACCCNCAGGTTTGAGTCCAAATATGTAACCGTCGTCCT 211
consensus_14650#0 GCTGGTGG---CCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCT 1008
consensus_14650#1 GCTGGTGG---CCCTTGGTCTAACCCACAGGTTTGAGTCCAAATATGTAACCGTCGTCCT 475
consensus_14650#4 ACTTGGAGGGTTTTTTTTTATACCCCACATATTTCCACGCCA-CATTTTCCCGGCGT--- 220
** * * ** * ** *** ** *** * * ** * *** ***
consensus_14650#2 GTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAAC 392
consensus_14650#3 GTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAAC 271
consensus_14650#0 GTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAAC 1068
consensus_14650#1 GTATAAGCCCATTGAACGATAGCATAGTCGCCCCCATGAAGTCGAAGTTAGCTTGACAAC 535
consensus_14650#4 -TGTGGTTTCGNTTANTTCCAGAATGGG-GCTTCCACAGGGGATATCTGAAACNTGCG-T 277
* * * * * ** ** * ** *** * * * * *
consensus_14650#2 TCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGA 452
consensus_14650#3 TCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGA 331
consensus_14650#0 TCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGA 1128
consensus_14650#1 TCACTGCGGAACCAACAAGGGCGAGGCCTCGCTTCCTGTAAAAGCACTTCAGGTTCAGGA 595
consensus_14650#4 GTATGGAGAAATTACCCCACCTTAGAACCCGCTGGAAATCCCACCACGAGAATCTTAGGT 337
* * * ** * * ** * **** * * *** * * ***
consensus_14650#2 GTATTTCCGATAACTTGCAGGAACTTTGGTTGGGTGTTGTACATGATGTACCATCATGAT 512
consensus_14650#3 GTATTTCCGATAACTTGCAGGAACTTTGGTTGG-TGTTGTACATGATGTACCATCATGAT 390
consensus_14650#0 GTATTTCCGATAACTTGCAGGAACTTTGGTTGG-TGTTGTACATGATGTACCATCATGAT 1187
consensus_14650#1 GTATTTCCGATAACTTGCAGGAACTTTGGTTGG-TGTTGTACATGATGTACCATCATGAT 654
consensus_14650#4 GCCCACGAGTTAGATCCTTGTGATCCCACTAGA--GTTCTTAATTATTTTGAACC--GAT 393
* * ** * * * * * *** * ** ** * * * ***
consensus_14650#2 GTCTGGCGCCCTGGGTTTGTTTACCCTCCGAGGGGCCAAAGCATCATGAGTTTTTACATA 572
consensus_14650#3 GTCTGGCGCCCTGG-TTTGTTTACC-TCCGAGGGGCCAAAGCATCATGAGTTTTTACAAA 448
consensus_14650#0 GTCTGGCGCCCTGG-TTTGTTTACC-TCCGAGGGGCCAAAGCATCATGAGTTTTTACATA 1245
consensus_14650#1 GTCTGGCGCCCTGG-TTTGTTTACC-TCCGAGGGGCCAAAGCATCATGAGTTTTTACATA 712
consensus_14650#4 GCCTGTTGTTTGTTCTTAATGTAAT------AAAAACAGAGGTGCTCATTTTACTACTAA 447
* *** * ** * ** ** ** * ** *** *
consensus_14650#2 TCAGCATTTCGTTGTT---ATCGATGCTCAAAGTATGAAATGTGTAGAA----------- 618
consensus_14650#3 AAAAAAAAAAAAAAAA---AAAA------------------------------------- 468
consensus_14650#0 TCAGCATTTCGTTGTT---ATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTA 1302
consensus_14650#1 TCAGCATTTCGTTGTTGTTATCGATGCTCAAGGTATGAAATGTGTAGAAAATACCACTTA 772
consensus_14650#4 AAAAAAAA---------------------------------------------------- 455
* *
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 GAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATT 1362
consensus_14650#1 GAACCGTGGAAATCCACAGAAATCTTAGGTGCCAGAGTTAGATCTTGTGATCCATAGATT 832
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 CTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCA 1422
consensus_14650#1 CTTAATTATTTTGAACGATGCTGTTGTTTGTTCTTAATGTAATAAAAACAGAGGTGCTCA 892
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ------------------------------------------------------------
consensus_14650#3 ------------------------------------------------------------
consensus_14650#0 TTTTACTACTAACAAAAAGTAAAAAAGATGGCGAGGGATAAAGACCTGGAGGGGGGGCCG 1482
consensus_14650#1 TTTTACTACTAAAAAAAAAACAAAAAAAAAAAAAAA------------------------ 928
consensus_14650#4 ------------------------------------------------------------
consensus_14650#2 ---------------------------
consensus_14650#3 ---------------------------
consensus_14650#0 CGGCCCCAATGGGGCCTATAGGGAGGC 1509
consensus_14650#1 ---------------------------
consensus_14650#4 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||