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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 768 fasta sequence
[AGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGGCGGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT-CCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGTTTAGATCGGTAACGTTAAAAAA]
[+] EMBL AU162621 [AGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGA ]
[+] EMBL AK070778 [ CTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGAGGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGACGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGGCGGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT CCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGT ]
[+] EMBL AU162628 [ GGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT CCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTATGGCTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGT ]
[+] EMBL AU071132 [ GGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT CCGCGCCGTGCTCGCCTCGCTCGGCGACGA CTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTGTGG ]
[+] EMBL AU071083 [ GGCGGACGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAGCT CCGCGCCGTGCTCGCCTCGCTCGGCGACGA CTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTGTGG ]
[+] EMBL AU071136 [ CGAGGGCGAGCTGAAGGAGACGTTCGCGGTGTTCGACGCCGACGGGGACGGGAGGATCTCCGCCGAGGAACTCCCGCGCCGTGCTCGCGTCGCTCGGCGACGAGCTCTGCTCCGTCGACGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGACGGGTTCGTCTGCTTCGACGAGTTCGCCCGCATGATGATGTAT GNTGCGCGTGATTATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCTGTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTGTACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGTTTAGATCGGTAACGTTAAAAAA]
consensusID : consensus_14654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 431 fasta sequence
[ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT-CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG-CGGCCGTGACGCGGGA-GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC-AAGGAGGAGC-TGG-CCGCGA-TGC-TCGCCG-AGGCGGATT-AC-GCC-GGGG-AGC-TCGTGCTTTG-AGGAG-ATCG-CGGCCGCAA-CGCGG-TGGAGCTTCAANTTTTGTTNCCTTTAAGTNAAGGGTTAAA]
[+] EMBL AU197355 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TTG CCGCGA TGCTTCGCCG AGGCGGATT AC GCC GGGG AGCTTCGTGCTTTG AGGAG ATCG CGGCCGCAA CGCGG TGGAGCTTCAANTTTTGTTNCCTTTAAGTNAAGGGTTAAA]
[+] EMBL AU164381 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGCTTGG CCGCGA TGCTTCGCCGAAGGCGGATT ACGGCC GGGG AGCTTCGTNCTTNGAAGGAG ATCGNGGGCCGCAACCGNGGTTGGAGCTTCAAGTTTTtg ]
[+] EMBL AU164382 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGGCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTNCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAAGGAGGAGCTTGG NCGCGA TGT TCGCCG AGGCGGATTAAC GGC GGGGAAGCTTCGTGCTTNGAAGGAGAATCG GGGnc ]
[+] EMBL AU164356 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TTG CCGCGATTNT TNGCCG AGGCGGATT AN GCCGGGGG AG TNGTGC TTG AGGAG ATCG CGGCCGCA ]
[+] EMBL AU164334 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGGTCGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TGG CCGCGA TGC TCGCCG AGGCGGATT AC GCC GGGG AGC TCGTGCT ]
[+] EMBL AU197282 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TGG CCGCGA TGC TCGCCG AGGCGGATT AC GCC GGGG AGC TCGTGC ]
[+] EMBL AU164374 [ATTTCTAAAGACATCGCCATGATGAAG TTGCGCATTTGTTCCGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGNAGGNGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCNCCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCT CTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGG CCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TGGACCGCGA TGC TCGCCG AGGCGGATT AC GCC GGGG AGC TCGTGCT ]
[+] EMBL AU164328 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGCGGGA GGACCTGGAGGTGGNCCTGCGGAGGATCGTGTCGAGC AAGGAGGAGC TTG CCGCGA TTCTTTGCCG AGGCGG ]
[+] EMBL AU164391 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCNGCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGNCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTCCTNCGGCACCAAGAAGCCGGCGGCGG CGGCCGTGACGTGGGA GGACCTGGAGGTGGCCCTNCGGAGGATCGTNTCGAGC AAGGAGGAGC TGG CCGCGA TNT TCGCCG A ]
[+] EMBL AU070064 [ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTT CGGCTCTTCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGGTGAGCAGCAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCCTCGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGNCACCACGTCGAGATCCGTGTTGCCGACGTCGGCGGCGGCGTCCTNCTNCGGCAACAAGAAGCCGGCGGGGG CGGCCGTGACGGGGGAGGGACCTGGAGGTGGCCCT CGGAGGATCG ]
consensusID : consensus_14654#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence
[AGGAGACGTTTCGCGGGTGTTCGACGNCCGNCGGGGAACGGGAAGNATCTCCGCCGAGGAGCTCCGCGNCCGTGCTCGCCTCGCTTCGGGNACNAAGCTTTGTTCCGTCGNACAACTGCCGCCGAATGATCGGCGGCGTGGACACCGACGGCGNACGGGTTCGTCTGTTTCNACNAGTTCGCCCGCATGATGATGTGTGG]
[+] EMBL AU176506 [AGGAGACGTTTCGCGGGTGTTCGACGNCCGNCGGGGAACGGGAAGNATCTCCGCCGAGGAGCTCCGCGNCCGTGCTCGCCTCGCTTCGGGNACNAAGCTTTGTTCCGTCGNACAACTGCCGCCGAATGATCGGCGGCGTGGACACCGACGGCGNACGGGTTCGTCTGTTTCNACNAGTTCGCCCGCATGATGATGTGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14654#0 AGCTTGCACATTTGTTCGGCTCTTCTTCTTCTTCGTCTTCGTCTTCCTCCAAGAAGAGGA 60
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 ------------------------------------------------------------
consensus_14654#0 GGAAGAAGAGGAGGAGCGGCGCCAAGAGCTGCTCCTTCGGCTCCACCACGTCTTCGTCGT 120
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 ------------------------------------------------------------
consensus_14654#0 CGTCGTCGTTGGCGGCGTCATCATCCGATGATTCCGCCGCCACCACGCCGAGATCCGTGT 180
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 ------------------------------------------------------------
consensus_14654#0 TGCCGGCGTCGGCGGCGGCGTCCTCCTCCGGCACCAAAAAGCCGGCGGCGGTGGCCGTGA 240
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 ------------------------------------------------------------
consensus_14654#0 CGCGGGAGGACCTGGAGGTGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCG 300
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 ------------------------------------------------------------
consensus_14654#0 CGATGCTCGCCGAGGCGGAGTGCGCCGGGGAGCTCGTGCTGGAGGAGATCGCGGCCGCGG 360
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 ------------ATTTCTAAAGACATCGCCATGATGAAGCTTGCGCATTTGTTCGGCTCT 48
consensus_14654#0 CGGCGGACGAGGGCGAGCTGAAGGAGACGTT-CGCGG-TGTTCGACGCC-GACGGGGAC- 416
consensus_14654#2 ---------------------AGGAGACGTTTCGCGGGTGTTCGACGNCCGNCGGGGAAC 39
consensus_14654#1 TCTTCTTCGTCTTCCTCCTCCAAGAAGGAGAACAAGG-TGAGCAGCAAGAAGAGGAGGAG 107
* ** * ** ** * * ** *
consensus_14654#0 -GGG---AGGATCTCCGCCGAGGAGCTCCGCGCC-GTGCTCGCG-TCGCTC--GGCGACG 468
consensus_14654#2 GGGA---AGNATCTCCGCCGAGGAGCTCCGCGNCCGTGCTCGCC-TCGCTTCGGGNACNA 95
consensus_14654#1 CGGCGCCAAGAGCTGCTCCTTCG-GCTCCACCAC-GTCCTCGTCGTCGTTGGCGGCGTCA 165
** * * ** * ** * ***** * * ** **** *** * **
consensus_14654#0 AGCTCTGCTCCGTCGA-CGACTGCCGCCGCATGATCGGCGGCGTGGACACCGACGGCGA- 526
consensus_14654#2 AGCTTTGTTCCGTCGNACAACTGCCGCCGAATGATCGGCGGCGTGGACACCGACGGCGNA 155
consensus_14654#1 TCATCCGATGATTCCG-CCGCCACCACGCCGAGATCCGTGTTGCCGACGTCGGCGGCGG- 223
* * * ** * * ** * **** * * * *** ** *****
consensus_14654#0 CGGGTTCGTCTGCTTCGACGAGTTCGCCCGCA----TGATGATGTATGGCTGCGCGTGAT 582
consensus_14654#2 CGGGTTCGTCTGTTTCNACNAGTTCGCCCGCA----TGATGATGTGTGG----------- 200
consensus_14654#1 CGTCCTCCTCCGGCACCAAGAAGCCGGCGGCGGCGGCCGTGACGCGGGAGGACCTGGAGG 283
** ** ** * * * * ** * ** *** * *
consensus_14654#0 TATATATTGGTTACTAGGTTTTGATCGATGTACGTAATGCATGTTAATCGATCGTCTCCT 642
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 TGGCCCTGCGGAGGATCGTGTCGAGCAAGGAGGAGCTGGCCGCGATGCTCGCCGAGGCGG 343
consensus_14654#0 GTATGTACGTGTCGTTCATCTGCTGTTCATTGTCTCCACTGATTTCTTTTGTTCTCTTTG 702
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 ATTACGCCGGGGAGCTCGTGCTTTGAGGAGATCGCGGCCGCAACGCGGTGGAGCTTCAAN 403
consensus_14654#0 TACGTAGTACGAGTTTCACAGAAGAAATGAACAGAACGGTCAGTTTAGATCGGTAACGTT 762
consensus_14654#2 ------------------------------------------------------------
consensus_14654#1 TTTTGTTNCCTTTAAGTNAAGGGTTAAA-------------------------------- 431
consensus_14654#0 AAAAAA 768
consensus_14654#2 ------
consensus_14654#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||