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Oryza sativa
cluster # 1467 cluster # 1467       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1467#0 length = 1543 sequences # 2  

consensusID : consensus_1467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1543
fasta sequence
                              [CTTTCCCCGGTCTTGGAGGGTCTCATCCTTCCTTCCCCCTCCATTGCATGCATGCGCGTCGCGGTTACAATTAATTAAAACCGCAAGCGCATGCATCTTAATCGCCCCCATGCATCTCCGCCTAAATTAAATCGATCCATCCATCGCCTCGCGCAATTAACGATCCATCGATCGAATCGAAGCTCGCTAGATTTCGAGAGATCAATACATACATCTCATCAATTTGGGTTGCATTTGAGAGAGAGGAAGAGGAAGAGGAAGAGAGGAGGAGAAGAGCAAGGTAGCTAGGGTAGCTTGGGCATGGCCGGCCGCCGGTTGC-TGGTGGCAACGGCGG-TGGTGGCGGCGGCGGCGG-CGG-TGGTCGCGGCGGCGGCGCTGGAGGCGATCAACGTGACGACGGTGGCGTTCGAGGAGGGGTACACGCCGCTGTTCGGCTTCGACAACATCCTCCGCTCCGCCGACGACCGCACCGTCAGCCTCCTCCTCGACCGCTCCACCGGCTCTGGGTTCATGTCGTCGTCCATGTACCAGCACGGCTTCTTCAGCGCCTCCATCAAGCTCCCCTCCGACTACACCGCCGGCGTCGTCGTCGCCTTCTACACATCGAACGGCGACGTGATCGAGAAGCGGCACGACGAGCTGGACTTCGAGTTCCTGGGCAACATCCGCGGGAAGCCATGGCGGGTGCAGACGAACGTGTAGGGCAATGGCAGCGTGAGCCGGGGGAGGGAGGAGCGCTACCTGCTCCCCTTCGACCCGACCACGGAGTTCCACCGCTACTCCATCCTCTGGACGCGCGCCGCCATCGTCTTCTTCGTCGACGACGTCCCCATCCGCGAGGTCCGCCGCACGCCGGCGATGACCGGCGACTTCCCGTCCAAGCCCATGTCCATCTACGCCACCGTCTGGGACGCCTCCACCTGGGCCACCTCCGGCGGCCGCTACCGCGTCAACTACCGGTACGGGCCGTTCGTGGCGTCGTTCACCGACCTCGCCCTCCTCGGCTGCCGCGTCGGCGACCCCATCGGCCAGATGCTCTCCTCCGCCGCCTGCACCGCCGCCGAGGACGCGCTGCTCGCCTACGACCTCGCCGTGATGACGCTGGAGAAGCAGCAGGCGATGCGGCGGTTCAGGGAGCAGAACATGGTGTACTCCTACTGCTACGACACGCTGCGGTACCCGGCGCCGTTCCTGGAGTGCGACGTCGTGGAGTCCGAGCGCCGCCGGTTCAAGGGCAGCGGCCACCTCCGCCTCGCCTTCCGCCGCCGCCGCCGCACCCGCCCCGGATCCCGGCCGGCGAGGCCCACCAGGGCCGCCGACATGTAGCGCAGCACATAATCATATTTGTTTCATCATTTCATCGTCGCGCCTTCGAGTCGTGGGATGATCGAAACGGGAGCAAAAGAAAAAAAAAATAACGGACACACGCAACGACCAATTGGGCCCACGAGGAAAGGAGAAAGCGGCCAGGCCCAATTTGGAAGTTGAAGGCCCATTCCAAATTGGGCCTGAATTCTAGTGGTTGATCCAAATGTCATCTTTAATT]

[+] EMBL AK073018             [CTTTCCCCGGTCTTGGAGGGTCTCATCCTTCCTTCCCCCTCCATTGCATGCATGCGCGTCGCGGTTACAATTAATTAAAACCGCAAGCGCATGCATCTTAATCGCCCCCATGCATCTCCGCCTAAATTAAATCGATCCATCCATCGCCTCGCGCAATTAACGATCCATCGATCGAATCGAAGCTCGCTAGATTTCGAGAGATCAATACATACATCTCATCAATTTGGGTTGCATTTGAGAGAGAGGAAGAGGAAGAGGAAGAGAGGAGGAGAAGAGCAAGGTAGCTAGGGTAGCTTGGGCATGGCCGGCCGCCGGTTGC TGGTGGCAACGGCGG TGGTGGCGGCGGCGGCGG CGG TGGTCGCGGCGGCGGCGCTGGAGGCGATCAACGTGACGACGGTGGCGTTCGAGGAGGGGTACACGCCGCTGTTCGGCTTCGACAACATCCTCCGCTCCGCCGACGACCGCACCGTCAGCCTCCTCCTCGACCGCTCCACCGGCTCTGGGTTCATGTCGTCGTCCATGTACCAGCACGGCTTCTTCAGCGCCTCCATCAAGCTCCCCTCCGACTACACCGCCGGCGTCGTCGTCGCCTTCTACACATCGAACGGCGACGTGATCGAGAAGCGGCACGACGAGCTGGACTTCGAGTTCCTGGGCAACATCCGCGGGAAGCCATGGCGGGTGCAGACGAACGTGTAGGGCAATGGCAGCGTGAGCCGGGGGAGGGAGGAGCGCTACCTGCTCCCCTTCGACCCGACCACGGAGTTCCACCGCTACTCCATCCTCTGGACGCGCGCCGCCATCGTCTTCTTCGTCGACGACGTCCCCATCCGCGAGGTCCGCCGCACGCCGGCGATGACCGGCGACTTCCCGTCCAAGCCCATGTCCATCTACGCCACCGTCTGGGACGCCTCCACCTGGGCCACCTCCGGCGGCCGCTACCGCGTCAACTACCGGTACGGGCCGTTCGTGGCGTCGTTCACCGACCTCGCCCTCCTCGGCTGCCGCGTCGGCGACCCCATCGGCCAGATGCTCTCCTCCGCCGCCTGCACCGCCGCCGAGGACGCGCTGCTCGCCTACGACCTCGCCGTGATGACGCTGGAGAAGCAGCAGGCGATGCGGCGGTTCAGGGAGCAGAACATGGTGTACTCCTACTGCTACGACACGCTGCGGTACCCGGCGCCGTTCCTGGAGTGCGACGTCGTGGAGTCCGAGCGCCGCCGGTTCAAGGGCAGCGGCCACCTCCGCCTCGCCTTCCGCCGCCGCCGCCGCACCCGCCCCGGATCCCGGCCGGCGAGGCCCACCAGGGCCGCCGACATGTAGCGCAGCACATAATCATATTTGTTTCATCATTTCATCGTCGCGCCTTCGAGTCGTGGGATGATCGAAACGGGAGCAAAAGAAAAAAAAAATAACGGACACACGCAACGACCAATTGGGCCCACGAGGAAAGGAGAAAGCGGCCAGGCCCAATTTGGAAGTTGAAGGCCCATTCCAAATTGGGCCTGAATTCTAGTGGTTGATCCAAATGTCATCTTTAATT]
[+] EMBL C73205               [                     CTCATCCTTCCTTCCCCCTCCATTGCATGCATGCNCGTCG GGTTACAATTAATTAAAACCGCAAGCGCATGCATCTTAATCGCCCCCATGCATCTCCGCCTAANTTAAATCGATCCATCCATCGCCTCGCGCAATTAACGATCCATCGATCGANTCGAAGCTCGCTAGATTTCGAGAGATCAATACATACATCTCATCAATTTGGGTTGCATTTGAGAGAGAGGAAGAGGAAGAGGAAGAGAGGAGGAGNAGAGCAAGGTAGCTAGGGTAGCTTGGGCATGGCCGGCCGCCGGTTNCTTGGTGGC ACGGCGGTTGGTTGCGGCGGCGGCGGCCGGTTGGTC NGGCGGCGGCGTTGGAGG GATCAACGTTACGACGGTGGCG TCGANGAGGGGTACACGCCGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_1467#0 CTTTCCCCGGTCTTGGAGGGTCTCATCCTTCCTTCCCCCTCCATTGCATGCATGCGCGTC GCGGTTACAATTAATTAAAACCGCAAGCGCATGCATCTTAATCGCCCCCATGCATCTCCG CCTAAATTAAATCGATCCATCCATCGCCTCGCGCAATTAACGATCCATCGATCGAATCGA AGCTCGCTAGATTTCGAGAGATCAATACATACATCTCATCAATTTGGGTTGCATTTGAGA GAGAGGAAGAGGAAGAGGAAGAGAGGAGGAGAAGAGCAAGGTAGCTAGGGTAGCTTGGGC ATGGCCGGCCGCCGGTTGCTGGTGGCAACGGCGGTGGTGGCGGCGGCGGCGGCGGTGGTC GCGGCGGCGGCGCTGGAGGCGATCAACGTGACGACGGTGGCGTTCGAGGAGGGGTACACG CCGCTGTTCGGCTTCGACAACATCCTCCGCTCCGCCGACGACCGCACCGTCAGCCTCCTC CTCGACCGCTCCACCGGCTCTGGGTTCATGTCGTCGTCCATGTACCAGCACGGCTTCTTC AGCGCCTCCATCAAGCTCCCCTCCGACTACACCGCCGGCGTCGTCGTCGCCTTCTACACA TCGAACGGCGACGTGATCGAGAAGCGGCACGACGAGCTGGACTTCGAGTTCCTGGGCAAC ATCCGCGGGAAGCCATGGCGGGTGCAGACGAACGTGTAGGGCAATGGCAGCGTGAGCCGG GGGAGGGAGGAGCGCTACCTGCTCCCCTTCGACCCGACCACGGAGTTCCACCGCTACTCC ATCCTCTGGACGCGCGCCGCCATCGTCTTCTTCGTCGACGACGTCCCCATCCGCGAGGTC CGCCGCACGCCGGCGATGACCGGCGACTTCCCGTCCAAGCCCATGTCCATCTACGCCACC GTCTGGGACGCCTCCACCTGGGCCACCTCCGGCGGCCGCTACCGCGTCAACTACCGGTAC GGGCCGTTCGTGGCGTCGTTCACCGACCTCGCCCTCCTCGGCTGCCGCGTCGGCGACCCC ATCGGCCAGATGCTCTCCTCCGCCGCCTGCACCGCCGCCGAGGACGCGCTGCTCGCCTAC GACCTCGCCGTGATGACGCTGGAGAAGCAGCAGGCGATGCGGCGGTTCAGGGAGCAGAAC ATGGTGTACTCCTACTGCTACGACACGCTGCGGTACCCGGCGCCGTTCCTGGAGTGCGAC GTCGTGGAGTCCGAGCGCCGCCGGTTCAAGGGCAGCGGCCACCTCCGCCTCGCCTTCCGC CGCCGCCGCCGCACCCGCCCCGGATCCCGGCCGGCGAGGCCCACCAGGGCCGCCGACATG TAGCGCAGCACATAATCATATTTGTTTCATCATTTCATCGTCGCGCCTTCGAGTCGTGGG ATGATCGAAACGGGAGCAAAAGAAAAAAAAAATAACGGACACACGCAACGACCAATTGGG CCCACGAGGAAAGGAGAAAGCGGCCAGGCCCAATTTGGAAGTTGAAGGCCCATTCCAAAT TGGGCCTGAATTCTAGTGGTTGATCCAAATGTCATCTTTAATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)