cluster # 14672

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Oryza sativa
cluster # 14672 cluster # 14672 Sequences # 17 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14672#0 length = 1049 sequences # 10
consensus_14672#1 length = 584 sequences # 5

consensus_14672#2 length = 502 sequences # 1
consensus_14672#3 length = 496 sequences # 1

consensusID : consensus_14672#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1049
fasta sequence

                              [CCCCGCGACAATCGCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC--TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAA-------AAAAAAAAAAAAAAAAAAGAGCGGCCCTCGTTCCGAA]

[+] EMBL AK069194             [CCCCGCGACAATCGCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC  TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAGAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGA                                                                               ]
[+] EMBL CB619443             [             GCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC  TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATTAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAAGAGACAGCGCTCGAGCATTCATCCA                                                                                                                                                                                                                                     ]
[+] EMBL CA754548             [                   AATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGTGGGGGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC  TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGGCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCNAGTNTCAGTCGCCGACGGTTGCCGAGAAAGGGTACGCCAATAACATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AK100647             [                                                                                                                                   TTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGCCGTGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC  TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATG                                                        ]
[-] EMBL CB619444             [                                                                                                                                                                                                                                                                                                                                                                                     GACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTTTTTCAGGGC  TCGATTTTATTTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTCCCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATTAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTTTGAAAACCCATGGGGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCCCACTGTTCCAAGGCTTGATGAGAAGAGTTTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACCCCCCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTg                                              ]
[+] EMBL AU057211             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC  TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACAC                                                                                                                                                                  ]
[+] EMBL BU673196             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tagctGGGCTATCGACTCTATCTGGCGCCCTTCCGGGCCTCCCAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACGGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAA       AAAAAAATAAAAAAAAAAGAGCGGCCCTCGTTCCGAA]
[+] EMBL AU057212             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAATTTGTC AAAAAAAAAAAAAAAAAAaa                 ]
[+] EMBL AU056351             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAA       TTTGAAAAA                            ]
[+] EMBL AU057736             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAATTTGTCTAAAAAAAAAAAA                         ]




>consensus_14672#0
CCCCGCGACAATCGCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGC
CGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAG
GATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCG
GAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCA
GGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGC
GCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGA
GTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTA
CATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGG
CTCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGT
TCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGC
CGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGA
CTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACG
TCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCG
TTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGA
AAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATT
CATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAA
GAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAA
AAAAAAAAAAGAGCGGCCCTCGTTCCGAA

consensusID : consensus_14672#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 584
fasta sequence

                              [CACCTAAATTACCTCACTAAAGGGAATAGCTGGGCCGCTCGACTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG-CCGACGGTTGCCGAGAA-GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTA-TAGAATCATATGTGG-ATCCATTCATCATACGTCATCCAA-AGGGCCACA-CTGTTCCAAGGCTTG-ATGAG-AAGAGTCTGGAAATCATGCTCCGTTTCCTCG-ATAAG-ATTGAGAAGG-AGACGGCGCTCGAGCATTCATCCACTGATGTTG-ACGA-AAAGGAAATGTACTTGTG-AAGGGT-AG-AAGATTAGTGTCCAGT-CCAG-ATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCC-TTATTTATGTGGTGGTACAAAGAGTTGA-AAACTATTGAATAATCAC-GCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA]

[+] EMBL BU673748             [CACCTAAATTACCTCACTAAAGGGAATAGCTGGGCCGCTCGACTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG CCGACGGTTGCCGAGAA GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTA TAGAATCATATGTGG ATCCATTCATCATACGTCATCCAA AGGGCCACA CTGTTCCAAGGCTTG ATGAG AAGAGTCTGGAAATCATGCTCCGTTTCCTCG ATAAG ATTGAGAAGG AGACGGCGCTCGAGCATTCATCCACTGATGTTG ACGA AAAGGAAATGTACTTGTG AAGGGT AG AAGATTAGTGTCCAGT CCAG ATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCC TTATTTATGTGGTGGTACAAAGAGTTGA AAACTATTGAATAATCAC GCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA]
[+] EMBL BU673307             [                    AGGGAATAGCTGGGCCGCTCGACTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG CCGACGGTTGCCGAGAA GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTA TAGAATCATATGTGGCATCCATTCATCATACGTCATCCAACAGGGCCACA CTGTTCCAAGGCTTGCATGAGCAAGAGTCTGGAAATCATGCTCCGTTTCCTCGCATAAGCATTGAGAAGGCAGCAGGCGCTCGAGCATTCATCCACTGCTGTTGCACCACAACGGAAATGTACTTGTGCAAGGGTCAGCACGATTCATGTCCAGTCCCAGCATAC CACCAAATTCATACTATAGCCAAGCATACTGTAGTACTTGTATCCTCCTTTATTTATGTGGTGGTACAAAGAGTTGACACACTATTGAATAATCACGGCAAAcaacttga                             ]
[+] EMBL CB966433             [                        AATAG TGGGCCG TCGACTCTATCTGGCGCCCTTCCGGG CT CAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATC AGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG CCGACGGTTGCCGAGAA GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTA TAGAATCATATGTGG ATCCATTCATCATACGTCATCCAA AGGGCCACA CTGTTCCAAGGCTTG ATGAG AAGAGTCTGGAAATCATGCTCCGTTTCCTCG ATAAG ATTGAGAAGG AGACGGCGCTCGAGCATTCATCCACTGATGTTG ACGA AAAGGAAATGTACTTGTG AAGGGT AG AAGATTAGTGTCCAGT CCAG ATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCC TTATTTATGTGGTGGTACAAAGAGTTGA AAACTATTGAATAATCAC GCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA]
[+] EMBL CB967169             [                                          CTCTATCTGGCGCCCTTCCGGGCCT CAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG CCGACGGTTGCCGAGAA GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAAACCATGGGGAAAAAGTTATTAAATTCTTTTTGGG TTCCATTCATCATACGTCATCCAA AGGGCCACA CTGTTCCAAGGCTTG ATGAG AAGAGTCTGGAAATCATGCTCCGTTTCCTCG ATAAG ATTGAGAAGG AGACGGCGCTCGAGCATTCATCCACTGATGTTG ACGA AAAGGAAATGTACTTGTG AAGGGT AG AAGATTAGTGTCCAGT CCAG ATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCC TTATTTATGTGGTGGTACAAAGAGTTGA AAACTATTGAATAATCAC GCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA]
[+] EMBL AA749618             [                                                                                                                                 GCGCCAAGTTTCAGTCGACCG  GGTTGCCGAGAACGGTG ACG CAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAACGTTA TAGAATCATATGTGG ATCCATTCATCATACGTCATCCAA A GGCCACAGCTGTTCCAAagg                                                                                                                                                                                                                                                                                                     ]




>consensus_14672#1
CACCTAAATTACCTCACTAAAGGGAATAGCTGGGCCGCTCGACTCTATCTGGCGCCCTTC
CGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAA
TCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACA
TCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAA
AGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTC
CAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGG
AGACGGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGG
TAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGT
TGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATC
ACGCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA

consensusID : consensus_14672#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [GTCTATAGTATGAATTTGGTGTGTATATGGACTGGACACTACTCTTCTACCCTTCACAAGCACATTTCCTTTTCGACAAGATCAGAGGATGAATGCTCGAGCGCCAACGTCCGAGCTGACCTGCGAGTCATACCCTTACGATAAAGCCAACCTCCGCTGGCCCGAGCGAGACAACAAGATTTATTTTTCACAGAGAACGGATTGGCACTCGCCTGATTATTCTCGCGTGCCGTGCTTTTTTCGACGCCCGAGAACTGCCTGGAACCCACCTGGATCAATACGCTGGTACCCACTGCCTCCCTGGAACTCTCATCTCGTGATTCTGTGCTCCAATTCTTGACTACACCATCGAGGCGCCGAGAGTGCACCCTACCTTTCCATTTCCTCCTATAGCCAATTCTTGATCCTTATGATTCAAGAGAATGGGTTCAGTTTACCCCCCTCACTTGGGTAAACGCCCTAGACATCTTCCACTGTCCCCTAGCCCTTTCTTCTCCTCCTC]

[+] EMBL CA754561             [GTCTATAGTATGAATTTGGTGTGTATATGGACTGGACACTACTCTTCTACCCTTCACAAGCACATTTCCTTTTCGACAAGATCAGAGGATGAATGCTCGAGCGCCAACGTCCGAGCTGACCTGCGAGTCATACCCTTACGATAAAGCCAACCTCCGCTGGCCCGAGCGAGACAACAAGATTTATTTTTCACAGAGAACGGATTGGCACTCGCCTGATTATTCTCGCGTGCCGTGCTTTTTTCGACGCCCGAGAACTGCCTGGAACCCACCTGGATCAATACGCTGGTACCCACTGCCTCCCTGGAACTCTCATCTCGTGATTCTGTGCTCCAATTCTTGACTACACCATCGAGGCGCCGAGAGTGCACCCTACCTTTCCATTTCCTCCTATAGCCAATTCTTGATCCTTATGATTCAAGAGAATGGGTTCAGTTTACCCCCCTCACTTGGGTAAACGCCCTAGACATCTTCCACTGTCCCCTAGCCCTTTCTTCTCCTCCTC]




>consensus_14672#2
GTCTATAGTATGAATTTGGTGTGTATATGGACTGGACACTACTCTTCTACCCTTCACAAG
CACATTTCCTTTTCGACAAGATCAGAGGATGAATGCTCGAGCGCCAACGTCCGAGCTGAC
CTGCGAGTCATACCCTTACGATAAAGCCAACCTCCGCTGGCCCGAGCGAGACAACAAGAT
TTATTTTTCACAGAGAACGGATTGGCACTCGCCTGATTATTCTCGCGTGCCGTGCTTTTT
TCGACGCCCGAGAACTGCCTGGAACCCACCTGGATCAATACGCTGGTACCCACTGCCTCC
CTGGAACTCTCATCTCGTGATTCTGTGCTCCAATTCTTGACTACACCATCGAGGCGCCGA
GAGTGCACCCTACCTTTCCATTTCCTCCTATAGCCAATTCTTGATCCTTATGATTCAAGA
GAATGGGTTCAGTTTACCCCCCTCACTTGGGTAAACGCCCTAGACATCTTCCACTGTCCC
CTAGCCCTTTCTTCTCCTCCTC

consensusID : consensus_14672#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [TCTATCTGGCGCCCTTCCGGGCTCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGCACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCGTCGGTTCACTTCCTCGAGTGACACTGCACTTTCTGCAAAACCCCATGGCGCAAACAGCTTATAGCACATCCATCATGTGGCATCCATTCATCATCACGTCATCCCAACAGGGCCCACACTGTTCCCAAGGCATTGCATGCAGCACAGCAGTCTGGCAAATCCATGCTCCAGTTTCCCTCGCATCAAGCATTGCAGCACAGGCAGCANGGCAGACTCGCAGCCATTCAATCCCACATGCATAGTTGCACAGCACAACAGGCAACATGTCACTATGTGCACAGGGTCAGCACGCATTCAGTAGTCCCCAGTCCCAGCATACAACCACCAAACATTCCATCACATCATCAG]

[+] EMBL CB965906             [TCTATCTGGCGCCCTTCCGGGCTCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGCACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCGTCGGTTCACTTCCTCGAGTGACACTGCACTTTCTGCAAAACCCCATGGCGCAAACAGCTTATAGCACATCCATCATGTGGCATCCATTCATCATCACGTCATCCCAACAGGGCCCACACTGTTCCCAAGGCATTGCATGCAGCACAGCAGTCTGGCAAATCCATGCTCCAGTTTCCCTCGCATCAAGCATTGCAGCACAGGCAGCANGGCAGACTCGCAGCCATTCAATCCCACATGCATAGTTGCACAGCACAACAGGCAACATGTCACTATGTGCACAGGGTCAGCACGCATTCAGTAGTCCCCAGTCCCAGCATACAACCACCAAACATTCCATCACATCATCAG]




>consensus_14672#3
TCTATCTGGCGCCCTTCCGGGCTCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGA
TCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGCACGGTTGCCGAGAAG
GCGTACGCCAATAACATCAAATGCCCCGTCGGTTCACTTCCTCGAGTGACACTGCACTTT
CTGCAAAACCCCATGGCGCAAACAGCTTATAGCACATCCATCATGTGGCATCCATTCATC
ATCACGTCATCCCAACAGGGCCCACACTGTTCCCAAGGCATTGCATGCAGCACAGCAGTC
TGGCAAATCCATGCTCCAGTTTCCCTCGCATCAAGCATTGCAGCACAGGCAGCANGGCAG
ACTCGCAGCCATTCAATCCCACATGCATAGTTGCACAGCACAACAGGCAACATGTCACTA
TGTGCACAGGGTCAGCACGCATTCAGTAGTCCCCAGTCCCAGCATACAACCACCAAACAT
TCCATCACATCATCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14672#0      CCCCGCGACAATCGCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGC 60
consensus_14672#1      ------------------------------------------------------------
consensus_14672#3      ------------------------------------------------------------
consensus_14672#2      ------------------------------------------------------------
                                                                                   

consensus_14672#0      CGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAG 120
consensus_14672#1      ------------------------------------------------------------
consensus_14672#3      ------------------------------------------------------------
consensus_14672#2      ------------------------------------------------------------
                                                                                   

consensus_14672#0      GATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCG 180
consensus_14672#1      ------------------------------------------------------------
consensus_14672#3      ------------------------------------------------------------
consensus_14672#2      ------------------------------------------------------------
                                                                                   

consensus_14672#0      GAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCA 240
consensus_14672#1      ------------------------------------------------------------
consensus_14672#3      ------------------------------------------------------------
consensus_14672#2      ------------------------------------------------------------
                                                                                   

consensus_14672#0      GGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGC 300
consensus_14672#1      ------------------------------------------------------------
consensus_14672#3      ------------------------------------------------------------
consensus_14672#2      ------------------------------------------------------------
                                                                                   

consensus_14672#0      GCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGA 360
consensus_14672#1      ------------------------------------------------------------
consensus_14672#3      ------------------------------------------------------------
consensus_14672#2      ------------------------------------------------------------
                                                                                   

consensus_14672#0      GTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTA 420
consensus_14672#1      ------------------------------------------------------------
consensus_14672#3      ------------------------------------------------------------
consensus_14672#2      ------------------------------------------------------------
                                                                                   

consensus_14672#0      CATCGAGGAATTGATGATTAAAGAAGGGCCTT--TTGATGGACTGATGGGTTTCTCTCAG 478
consensus_14672#1      --------------------------CACCTAAATTACCTCACTAAAGGGAATAGCTGGG 34
consensus_14672#3      ------------------------------------------------------------
consensus_14672#2      ------------------------------------------------------------
                                                                                   

consensus_14672#0      G-GCTCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAG 537
consensus_14672#1      CCGCTCGACTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAG 94
consensus_14672#3      ---------TCTATCTGGCGCCCTTCCGGGC--TCAAGAACAAGGGTTGGCCCTGACTAG 49
consensus_14672#2      --------GTCTATAGTATGAATTTG-GTGTGTATATGGACTGGACACTACTCTT-CTAC 50
                                *****     *   **  * *     * * **  *      * **  *** 

consensus_14672#0      AGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGT-TTCAGTCGCCG-ACG 595
consensus_14672#1      AGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGT-TTCAGTCGCCG-ACG 152
consensus_14672#3      AGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGT-TTCAGTCGCCGCACG 108
consensus_14672#2      CCTTCACAAGCACATTTCCTTTTCGACAAGATCAGAGGATGAATGCTCGAGCGCCA-ACG 109
                         ***  ***  **  * * *    *  * *  **  *   * *  **   ****  ***

consensus_14672#0      GTTGCCGAGAAGGCGTACGC-CAATAACATCA-AATGCCCC-TCGGTTCACTTCCTCG-G 651
consensus_14672#1      GTTGCCGAGAAGGCGTACGC-CAATAACATCA-AATGCCCC-TCGGTTCACTTCCTCG-G 208
consensus_14672#3      GTTGCCGAGAAGGCGTACGC-CAATAACATCA-AATGCCCCGTCGGTTCACTTCCTCGAG 166
consensus_14672#2      ---TCCGAGCTGACCTGCGAGTCATACCCTTACGATAAAGCCAACCTCCGCTGGCCCGAG 166
                           *****  * * * **    *** * * *  **    *     * * **  * ** *

consensus_14672#0      TGACACTG-ACTTTCTGAAAA--CCCATGGCGAAAA--GCTTATAGAAT---CAT-ATGT 702
consensus_14672#1      TGACACTG-ACTTTCTGAAAA--CCCATGGCGAAAA--GCTTATAGAAT---CAT-ATGT 259
consensus_14672#3      TGACACTGCACTTTCTGCAAAACCCCATGGCGCAAACAGCTTATAGCACATCCATCATGT 226
consensus_14672#2      CGAGACAACAAGATTTATTTT---TCACAGAGAACG--GATTG--GCAC--TCGCCTGAT 217
                        ** **   *   * *         **  * * *    * **   * *    *      *

consensus_14672#0      GG-ATCCATTCATCAT-ACGTCATCCAAA---GGGCCACACTGTTCC-AAGGCTTGATGA 756
consensus_14672#1      GG-ATCCATTCATCAT-ACGTCATCCAAA---GGGCCACACTGTTCC-AAGGCTTGATGA 313
consensus_14672#3      GGCATCCATTCATCATCACGTCATCCCAACAGGGCCCACACTGTTCCCAAGGCAT--TGC 284
consensus_14672#2      TATTCTCGCGTGCCGT-GCTTTTTTCGAC----GCCCGAGAACTGCCTGGAACCCACCTG 272
                             *      * *  * *  * * *     * **      * **     *       

consensus_14672#0      GAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGA 816
consensus_14672#1      GAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACGGCGCTCGA 373
consensus_14672#3      ATGCAGCACAGCAGTCTGGCA--AATCCATGCTCCAGTTTCCCTCGCATCAAGCATTGCA 342
consensus_14672#2      GATCAATACGCTGGTACCCACTGCCTCCCTGGAACTCTCATCTCGTGATTCTGTGCTCCA 332
                           *         *          * * *                 *    *   *  *

consensus_14672#0      GCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTG 876
consensus_14672#1      GCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTG 433
consensus_14672#3      GCA--CAGGCAGCANGGCAGACTCGCAGCCATTCAATCCCACATGCATAGTTGCACAGCA 400
consensus_14672#2      ATTCTTGACTA-CACCATCGAGGCGCCGAGAGTGCACCCTACCTTTCCATTTCCTC---- 387
                                 *        **      *  * *  *            *           

consensus_14672#0      TC-CAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATC 935
consensus_14672#1      TC-CAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATC 492
consensus_14672#3      CAACAGGCAACATGT-CACTATGTGCACAGGGTCAGCACGCATTCAGTAG--------TC 451
consensus_14672#2      CTATAGCCAATTCTTGATCCTTATG-ATTCAAGAGA-ATGGGTTCAGTTT-------ACC 438
                           ** * *        *    *  *          * *  * * **           *

consensus_14672#0      CTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAAT 995
consensus_14672#1      CTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAAT 552
consensus_14672#3      CCCAGTCCCAGCATACAACCACCAAACATT-----CCATCACATCATCAG---------- 496
consensus_14672#2      CCCCTCACTTGGGTAAACGCCCTAGACATCTTCCACTGTCCCCTAGCCCTTTCTTCTCCT 498
                       * *          *       * *    *      *  *    *   *            

consensus_14672#0      GGATGTGTACTCTTTAAAAAAAAAAAAAAAAAAAAGAGCGGCCCTCGTTCCGAA 1049
consensus_14672#1      GGATGTGTACTCTTTAAAAAAAAAAAAAAAAA---------------------- 584
consensus_14672#3      ------------------------------------------------------
consensus_14672#2      CCTC-------------------------------------------------- 502