These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1049 fasta sequence [CCCCGCGACAATCGCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC--TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAA-------AAAAAAAAAAAAAAAAAAGAGCGGCCCTCGTTCCGAA] [+] EMBL AK069194 [CCCCGCGACAATCGCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAGAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGA ] [+] EMBL CB619443 [ GCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATTAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAAGAGACAGCGCTCGAGCATTCATCCA ] [+] EMBL CA754548 [ AATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGCCGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAGGATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGTGGGGGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGGCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCNAGTNTCAGTCGCCGACGGTTGCCGAGAAAGGGTACGCCAATAACATCAA ] [+] EMBL AK100647 [ TTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCGGAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCAGGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGCGCCGTTCCCCGCCGAGGGGAAGTCCGACGCCGTGGGCATCTTCGACCCGCCCTACTACGAGTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATG ] [-] EMBL CB619444 [ GACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTACATCGAGGAATTGATGATTAAAGAAGGGCCTTTTGATGGACTGATGGGTTTTTTTCAGGGC TCGATTTTATTTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTCCCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATTAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTTTGAAAACCCATGGGGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCCCACTGTTCCAAGGCTTGATGAGAAGAGTTTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACCCCCCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTg ] [+] EMBL AU057211 [ AGGGCCTTTTGATGGACTGATGGGTTTCTCTCAGGGC TCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACAC ] [+] EMBL BU673196 [ tagctGGGCTATCGACTCTATCTGGCGCCCTTCCGGGCCTCCCAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACGGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAA AAAAAAATAAAAAAAAAAGAGCGGCCCTCGTTCCGAA] [+] EMBL AU057212 [ CAGTCGCCGACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTATAGAATCATATGTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAATTTGTC AAAAAAAAAAAAAAAAAAaa ] [+] EMBL AU056351 [ GTGGATCCATTCATCATACGTCATCCAAAGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAA TTTGAAAAA ] [+] EMBL AU057736 [ AGGGCCACACTGTTCCAAGGCTTGATGAGAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGAGCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTGTCCAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAATGGATGTGTACTCTTTAATTTGTCTAAAAAAAAAAAA ] consensusID : consensus_14672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 584 fasta sequence [CACCTAAATTACCTCACTAAAGGGAATAGCTGGGCCGCTCGACTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG-CCGACGGTTGCCGAGAA-GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTA-TAGAATCATATGTGG-ATCCATTCATCATACGTCATCCAA-AGGGCCACA-CTGTTCCAAGGCTTG-ATGAG-AAGAGTCTGGAAATCATGCTCCGTTTCCTCG-ATAAG-ATTGAGAAGG-AGACGGCGCTCGAGCATTCATCCACTGATGTTG-ACGA-AAAGGAAATGTACTTGTG-AAGGGT-AG-AAGATTAGTGTCCAGT-CCAG-ATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCC-TTATTTATGTGGTGGTACAAAGAGTTGA-AAACTATTGAATAATCAC-GCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA] [+] EMBL BU673748 [CACCTAAATTACCTCACTAAAGGGAATAGCTGGGCCGCTCGACTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG CCGACGGTTGCCGAGAA GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTA TAGAATCATATGTGG ATCCATTCATCATACGTCATCCAA AGGGCCACA CTGTTCCAAGGCTTG ATGAG AAGAGTCTGGAAATCATGCTCCGTTTCCTCG ATAAG ATTGAGAAGG AGACGGCGCTCGAGCATTCATCCACTGATGTTG ACGA AAAGGAAATGTACTTGTG AAGGGT AG AAGATTAGTGTCCAGT CCAG ATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCC TTATTTATGTGGTGGTACAAAGAGTTGA AAACTATTGAATAATCAC GCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA] [+] EMBL BU673307 [ AGGGAATAGCTGGGCCGCTCGACTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG CCGACGGTTGCCGAGAA GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTA TAGAATCATATGTGGCATCCATTCATCATACGTCATCCAACAGGGCCACA CTGTTCCAAGGCTTGCATGAGCAAGAGTCTGGAAATCATGCTCCGTTTCCTCGCATAAGCATTGAGAAGGCAGCAGGCGCTCGAGCATTCATCCACTGCTGTTGCACCACAACGGAAATGTACTTGTGCAAGGGTCAGCACGATTCATGTCCAGTCCCAGCATAC CACCAAATTCATACTATAGCCAAGCATACTGTAGTACTTGTATCCTCCTTTATTTATGTGGTGGTACAAAGAGTTGACACACTATTGAATAATCACGGCAAAcaacttga ] [+] EMBL CB966433 [ AATAG TGGGCCG TCGACTCTATCTGGCGCCCTTCCGGG CT CAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATC AGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG CCGACGGTTGCCGAGAA GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAAGCTTA TAGAATCATATGTGG ATCCATTCATCATACGTCATCCAA AGGGCCACA CTGTTCCAAGGCTTG ATGAG AAGAGTCTGGAAATCATGCTCCGTTTCCTCG ATAAG ATTGAGAAGG AGACGGCGCTCGAGCATTCATCCACTGATGTTG ACGA AAAGGAAATGTACTTGTG AAGGGT AG AAGATTAGTGTCCAGT CCAG ATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCC TTATTTATGTGGTGGTACAAAGAGTTGA AAACTATTGAATAATCAC GCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA] [+] EMBL CB967169 [ CTCTATCTGGCGCCCTTCCGGGCCT CAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCG CCGACGGTTGCCGAGAA GGCGTACGCCAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAAACCATGGGGAAAAAGTTATTAAATTCTTTTTGGG TTCCATTCATCATACGTCATCCAA AGGGCCACA CTGTTCCAAGGCTTG ATGAG AAGAGTCTGGAAATCATGCTCCGTTTCCTCG ATAAG ATTGAGAAGG AGACGGCGCTCGAGCATTCATCCACTGATGTTG ACGA AAAGGAAATGTACTTGTG AAGGGT AG AAGATTAGTGTCCAGT CCAG ATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATCCTCC TTATTTATGTGGTGGTACAAAGAGTTGA AAACTATTGAATAATCAC GCAAAAGAATGGATGTGTACTCTTTAAAAAAAAAAAAAAAAA] [+] EMBL AA749618 [ GCGCCAAGTTTCAGTCGACCG GGTTGCCGAGAACGGTG ACG CAATAACATCAAATGCCCCTCGGTTCACTTCCTCGGTGACACTGACTTTCTGAAAACCCATGGCGAAAACGTTA TAGAATCATATGTGG ATCCATTCATCATACGTCATCCAA A GGCCACAGCTGTTCCAAagg ] consensusID : consensus_14672#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GTCTATAGTATGAATTTGGTGTGTATATGGACTGGACACTACTCTTCTACCCTTCACAAGCACATTTCCTTTTCGACAAGATCAGAGGATGAATGCTCGAGCGCCAACGTCCGAGCTGACCTGCGAGTCATACCCTTACGATAAAGCCAACCTCCGCTGGCCCGAGCGAGACAACAAGATTTATTTTTCACAGAGAACGGATTGGCACTCGCCTGATTATTCTCGCGTGCCGTGCTTTTTTCGACGCCCGAGAACTGCCTGGAACCCACCTGGATCAATACGCTGGTACCCACTGCCTCCCTGGAACTCTCATCTCGTGATTCTGTGCTCCAATTCTTGACTACACCATCGAGGCGCCGAGAGTGCACCCTACCTTTCCATTTCCTCCTATAGCCAATTCTTGATCCTTATGATTCAAGAGAATGGGTTCAGTTTACCCCCCTCACTTGGGTAAACGCCCTAGACATCTTCCACTGTCCCCTAGCCCTTTCTTCTCCTCCTC] [+] EMBL CA754561 [GTCTATAGTATGAATTTGGTGTGTATATGGACTGGACACTACTCTTCTACCCTTCACAAGCACATTTCCTTTTCGACAAGATCAGAGGATGAATGCTCGAGCGCCAACGTCCGAGCTGACCTGCGAGTCATACCCTTACGATAAAGCCAACCTCCGCTGGCCCGAGCGAGACAACAAGATTTATTTTTCACAGAGAACGGATTGGCACTCGCCTGATTATTCTCGCGTGCCGTGCTTTTTTCGACGCCCGAGAACTGCCTGGAACCCACCTGGATCAATACGCTGGTACCCACTGCCTCCCTGGAACTCTCATCTCGTGATTCTGTGCTCCAATTCTTGACTACACCATCGAGGCGCCGAGAGTGCACCCTACCTTTCCATTTCCTCCTATAGCCAATTCTTGATCCTTATGATTCAAGAGAATGGGTTCAGTTTACCCCCCTCACTTGGGTAAACGCCCTAGACATCTTCCACTGTCCCCTAGCCCTTTCTTCTCCTCCTC] consensusID : consensus_14672#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [TCTATCTGGCGCCCTTCCGGGCTCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGCACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCGTCGGTTCACTTCCTCGAGTGACACTGCACTTTCTGCAAAACCCCATGGCGCAAACAGCTTATAGCACATCCATCATGTGGCATCCATTCATCATCACGTCATCCCAACAGGGCCCACACTGTTCCCAAGGCATTGCATGCAGCACAGCAGTCTGGCAAATCCATGCTCCAGTTTCCCTCGCATCAAGCATTGCAGCACAGGCAGCANGGCAGACTCGCAGCCATTCAATCCCACATGCATAGTTGCACAGCACAACAGGCAACATGTCACTATGTGCACAGGGTCAGCACGCATTCAGTAGTCCCCAGTCCCAGCATACAACCACCAAACATTCCATCACATCATCAG] [+] EMBL CB965906 [TCTATCTGGCGCCCTTCCGGGCTCAAGAACAAGGGTTGGCCCTGACTAGAGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGTTTCAGTCGCCGCACGGTTGCCGAGAAGGCGTACGCCAATAACATCAAATGCCCCGTCGGTTCACTTCCTCGAGTGACACTGCACTTTCTGCAAAACCCCATGGCGCAAACAGCTTATAGCACATCCATCATGTGGCATCCATTCATCATCACGTCATCCCAACAGGGCCCACACTGTTCCCAAGGCATTGCATGCAGCACAGCAGTCTGGCAAATCCATGCTCCAGTTTCCCTCGCATCAAGCATTGCAGCACAGGCAGCANGGCAGACTCGCAGCCATTCAATCCCACATGCATAGTTGCACAGCACAACAGGCAACATGTCACTATGTGCACAGGGTCAGCACGCATTCAGTAGTCCCCAGTCCCAGCATACAACCACCAAACATTCCATCACATCATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14672#0 CCCCGCGACAATCGCCACAAATTCCCCCGCGCCGCGCCAGCCACACCCACACGCGCGCGC 60 consensus_14672#1 ------------------------------------------------------------ consensus_14672#3 ------------------------------------------------------------ consensus_14672#2 ------------------------------------------------------------ consensus_14672#0 CGGCCAGCCTACGCTTTTCCCCTCCCCCCCTCCCCCGCAACGAGCCGCGGCGGAAGGAAG 120 consensus_14672#1 ------------------------------------------------------------ consensus_14672#3 ------------------------------------------------------------ consensus_14672#2 ------------------------------------------------------------ consensus_14672#0 GATGGGGAGCCTTGGCGGGGAGGAGGGGGCGAGGCCGGCTGCGGCGGCGGAGGGGGCGCG 180 consensus_14672#1 ------------------------------------------------------------ consensus_14672#3 ------------------------------------------------------------ consensus_14672#2 ------------------------------------------------------------ consensus_14672#0 GAGGCCGAGGTTCCTGTGCCTGCACGGGTTCCGGACGAGCGGGGAGATCATGCGGAAGCA 240 consensus_14672#1 ------------------------------------------------------------ consensus_14672#3 ------------------------------------------------------------ consensus_14672#2 ------------------------------------------------------------ consensus_14672#0 GGTGGTGGGGAAGTGGCCCGCCGACGTCACGGCGCGCCTCGACCTCGTCTTCGCCGACGC 300 consensus_14672#1 ------------------------------------------------------------ consensus_14672#3 ------------------------------------------------------------ consensus_14672#2 ------------------------------------------------------------ consensus_14672#0 GCCGTTCCCCGCCGAGGGGAAGTCCGACGTCGAGGGCATCTTCGACCCGCCCTACTACGA 360 consensus_14672#1 ------------------------------------------------------------ consensus_14672#3 ------------------------------------------------------------ consensus_14672#2 ------------------------------------------------------------ consensus_14672#0 GTGGTTCCAGTTCGACAAGAATTTTACAGAGTACAGGAATTTCGACGAATGCCTGAACTA 420 consensus_14672#1 ------------------------------------------------------------ consensus_14672#3 ------------------------------------------------------------ consensus_14672#2 ------------------------------------------------------------ consensus_14672#0 CATCGAGGAATTGATGATTAAAGAAGGGCCTT--TTGATGGACTGATGGGTTTCTCTCAG 478 consensus_14672#1 --------------------------CACCTAAATTACCTCACTAAAGGGAATAGCTGGG 34 consensus_14672#3 ------------------------------------------------------------ consensus_14672#2 ------------------------------------------------------------ consensus_14672#0 G-GCTCGATTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAG 537 consensus_14672#1 CCGCTCGACTCTATCTGGCGCCCTTCCGGGCCTCCAAGAACAAGGGTTGGCCCTGACTAG 94 consensus_14672#3 ---------TCTATCTGGCGCCCTTCCGGGC--TCAAGAACAAGGGTTGGCCCTGACTAG 49 consensus_14672#2 --------GTCTATAGTATGAATTTG-GTGTGTATATGGACTGGACACTACTCTT-CTAC 50 ***** * ** * * * * ** * * ** *** consensus_14672#0 AGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGT-TTCAGTCGCCG-ACG 595 consensus_14672#1 AGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGT-TTCAGTCGCCG-ACG 152 consensus_14672#3 AGTTCCTAAGATCAAGTACCTCATAATCATAGGAGGCGCCAAGT-TTCAGTCGCCGCACG 108 consensus_14672#2 CCTTCACAAGCACATTTCCTTTTCGACAAGATCAGAGGATGAATGCTCGAGCGCCA-ACG 109 *** *** ** * * * * * * ** * * * ** **** *** consensus_14672#0 GTTGCCGAGAAGGCGTACGC-CAATAACATCA-AATGCCCC-TCGGTTCACTTCCTCG-G 651 consensus_14672#1 GTTGCCGAGAAGGCGTACGC-CAATAACATCA-AATGCCCC-TCGGTTCACTTCCTCG-G 208 consensus_14672#3 GTTGCCGAGAAGGCGTACGC-CAATAACATCA-AATGCCCCGTCGGTTCACTTCCTCGAG 166 consensus_14672#2 ---TCCGAGCTGACCTGCGAGTCATACCCTTACGATAAAGCCAACCTCCGCTGGCCCGAG 166 ***** * * * ** *** * * * ** * * * ** * ** * consensus_14672#0 TGACACTG-ACTTTCTGAAAA--CCCATGGCGAAAA--GCTTATAGAAT---CAT-ATGT 702 consensus_14672#1 TGACACTG-ACTTTCTGAAAA--CCCATGGCGAAAA--GCTTATAGAAT---CAT-ATGT 259 consensus_14672#3 TGACACTGCACTTTCTGCAAAACCCCATGGCGCAAACAGCTTATAGCACATCCATCATGT 226 consensus_14672#2 CGAGACAACAAGATTTATTTT---TCACAGAGAACG--GATTG--GCAC--TCGCCTGAT 217 ** ** * * * ** * * * * ** * * * * consensus_14672#0 GG-ATCCATTCATCAT-ACGTCATCCAAA---GGGCCACACTGTTCC-AAGGCTTGATGA 756 consensus_14672#1 GG-ATCCATTCATCAT-ACGTCATCCAAA---GGGCCACACTGTTCC-AAGGCTTGATGA 313 consensus_14672#3 GGCATCCATTCATCATCACGTCATCCCAACAGGGCCCACACTGTTCCCAAGGCAT--TGC 284 consensus_14672#2 TATTCTCGCGTGCCGT-GCTTTTTTCGAC----GCCCGAGAACTGCCTGGAACCCACCTG 272 * * * * * * * * * ** * ** * consensus_14672#0 GAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACAGCGCTCGA 816 consensus_14672#1 GAAGAGTCTGGAAATCATGCTCCGTTTCCTCGATAAGATTGAGAAGGAGACGGCGCTCGA 373 consensus_14672#3 ATGCAGCACAGCAGTCTGGCA--AATCCATGCTCCAGTTTCCCTCGCATCAAGCATTGCA 342 consensus_14672#2 GATCAATACGCTGGTACCCACTGCCTCCCTGGAACTCTCATCTCGTGATTCTGTGCTCCA 332 * * * * * * * * * consensus_14672#0 GCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTG 876 consensus_14672#1 GCATTCATCCACTGATGTTGACGAAAAGGAAATGTACTTGTGAAGGGTAGAAGATTAGTG 433 consensus_14672#3 GCA--CAGGCAGCANGGCAGACTCGCAGCCATTCAATCCCACATGCATAGTTGCACAGCA 400 consensus_14672#2 ATTCTTGACTA-CACCATCGAGGCGCCGAGAGTGCACCCTACCTTTCCATTTCCTC---- 387 * ** * * * * * consensus_14672#0 TC-CAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATC 935 consensus_14672#1 TC-CAGTCCAGATACACACCAAATTCATACTATAGACAAGCATACTGTTGTACTTGTATC 492 consensus_14672#3 CAACAGGCAACATGT-CACTATGTGCACAGGGTCAGCACGCATTCAGTAG--------TC 451 consensus_14672#2 CTATAGCCAATTCTTGATCCTTATG-ATTCAAGAGA-ATGGGTTCAGTTT-------ACC 438 ** * * * * * * * * * ** * consensus_14672#0 CTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAAT 995 consensus_14672#1 CTCCTTATTTATGTGGTGGTACAAAGAGTTGAAAACTATTGAATAATCACGCAAAAGAAT 552 consensus_14672#3 CCCAGTCCCAGCATACAACCACCAAACATT-----CCATCACATCATCAG---------- 496 consensus_14672#2 CCCCTCACTTGGGTAAACGCCCTAGACATCTTCCACTGTCCCCTAGCCCTTTCTTCTCCT 498 * * * * * * * * * * consensus_14672#0 GGATGTGTACTCTTTAAAAAAAAAAAAAAAAAAAAGAGCGGCCCTCGTTCCGAA 1049 consensus_14672#1 GGATGTGTACTCTTTAAAAAAAAAAAAAAAAA---------------------- 584 consensus_14672#3 ------------------------------------------------------ consensus_14672#2 CCTC-------------------------------------------------- 502 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||