These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 716 fasta sequence [TCCCGCTAGCCGCCGCCACTCG-CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT-CCAGAGGCCTCTCCCGCCTCCAGGCTCG-CCGGCCGCCCGC-CCGCCTTCGCTGCCGATGGCGGAG-GAAGCCACT---CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA-CCCA-GGTGCTTATCAA-TTGCC-GGAACAACAAGAAGTTGC-TTGGTCGTG-TGAGGGCA-TTTGATCGCCATT-GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT-GGG-GATTCGGTCATCATTG-TGCTCAGGAACCCGAAATGAGTTATAT-GGTCTTGTATCCAG-GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAATCTGTTTCGTGTTGATTTCTCACTTTCTGAATTGCTAAAAGCACTGCAATGTATTGATTGCGC] [+] EMBL AU092630 [TCCCGCTAGCCGCCGCCACTCG CCGTCGTCGANATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAA ] [+] EMBL C27708 [ CGCTAGCCGCCGCCACNCG CCGTCGTCGACANCGTCTCCGCTCCTNAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGG TCG CCGNCCGCCCGC CCGCCTTCGCTGCCGATGG GGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTNCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG G ] [+] EMBL AK121220 [ cCTAGCCGCCGCCACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCACTGCTTCTGTTTCGTGTTGATTTCTCACTTT ] [+] EMBL CF333220 [ CTAGCCGCCGCCACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACTCAGCAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAGCAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGGNGATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTAT CAGNGGTTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGAC ] [+] EMBL CF314982 [ cCTAGCCGCCGCCACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATATGGGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGAC ] [+] EMBL AU162290 [ ACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGGCGGAG GAAGCCACTCAGCAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTTGTTATCAATTTGCCGGGAACAACAAGAAGTTTCTTTGGTCGTGTTAAGGGCATTTTAATCG CATTNGCAc ] [+] EMBL C27943 [ ACTCG CCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGAT CCAGAGGCCTCTCCCGCCTCCAGGCTCG CCGGCCGCCCGC CCGCCTTCGCTGCCGATGG GGAGNGAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGG GATTCGGTCATCATTGTTGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG G ] [+] EMBL AU161115 [ aatTCGCCCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGATCCCAGAGGCCTCTCCCGCCTCCAGGCTCGCCCGGCCGCCCGCACCGCCTTCGCTGCCGATGNCGGAG GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTNCCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAA ] [-] EMBL CF314983 [ GAAGCCACT CAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCANNGGGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAA ] [-] EMBL CF333221 [ GGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACACCCCA GGTGCTTATCAA TTGCC GGAACAGCAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCATTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GGTTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGCCAATTTGGAACTGCAAAAAAaaaaaa ] [+] EMBL CB097000 [ GGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTGCTGATGATGAGCGTGAAGAACAACA CCCA GGTGCTTATCAA TTGCC GGAACAACAAGAAGTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAGATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGC ] [+] EMBL AU058316 [ TCAA TTGCC GGAACAACAAGAANTTGC TTGGTCGTG TGAGGGCA TTTGATCGCCATT GCAACATGGTTCTTGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCNGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGNACTGCAAAAA ] [+] EMBL AK105062 [ TAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGT GGG GATTCGGTCATCATTG TGCTCAGGAACCCGAAATGAGTTATAT GGTCTTGTATCCAG GATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACACCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAAT ] [+] EMBL CB096347 [ AGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAGCTGCACTGCTTCTGTTTCGTGTTGATTTCTCACTTTCTGAATTGCTAAAAGCACTGCAATGTATTGATTGCGC] consensusID : consensus_14679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 414 fasta sequence [TACTTTCGTTCTTCTGAAGTTGCAATGTGGAAGAACTATTTGGAGACCTGAACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGA-AATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAAAAAAAAAAAAAAAAAAGAA] [+] EMBL AU058005 [TACTTTCGTTCTTCTGAAGTTGCAATGTGGAAGAACTATTTGGAGACCTGAACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGA AATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAAAAAAAAAAAAAAAAAAGAA] [+] EMBL CF326860 [ TTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGA AATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAA ] [-] EMBL CF326861 [ TCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGANAATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14679#0 TCCCGCTAGCCGCCGCCACTCGCCGTCGTCGACATCGTCTCCGCTCCTGAGCTCCAGATC 60 consensus_14679#1 ------------------------------------------------------------ consensus_14679#0 CAGAGGCCTCTCCCGCCTCCAGGCTCGCCGGCCGCCCGCCCGCCTTCGCTGCCGATGGCG 120 consensus_14679#1 ------------------------------------------------------------ consensus_14679#0 GAGGAAGCCACTCAGGGGAAGAAGGAGGAGGAGGAATTCAGTACGGGGCCGCTGTCCGTG 180 consensus_14679#1 ------------------------------------------------------------ consensus_14679#0 CTGATGATGAGCGTGAAGAACAACACCCAGGTGCTTATCAATTGCCGGAACAACAAGAAG 240 consensus_14679#1 ------------------------------------------------------------ consensus_14679#0 TTGCTTGGTCGTGTGAGGGCATTTGATCGCCATTGCAACATGGTTCTTGAGAATGTTAGG 300 consensus_14679#1 -------------TACTTTCGTTCTTCTGAAGTTGCAATGTGG-----AAGAACTATTTG 42 * * ** * ****** *** **** * * consensus_14679#0 GAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAAC 360 consensus_14679#1 GAGACCTGAACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAAC 102 **** ** *************************************************** consensus_14679#0 AAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGG 420 consensus_14679#1 AAGGACAGGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGG 162 ************************************************************ consensus_14679#0 AACCCGAAATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTA 480 consensus_14679#1 AACCCGAAATGAGTTATATGGTCTTGTATCCAGGATTGTCTCTTTGCTACGTCGCTCTTA 222 ************************************************************ consensus_14679#0 GTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGT 540 consensus_14679#1 GTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATATTTGATGGTTCAGT 282 ************************************************************ consensus_14679#0 GTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGC 600 consensus_14679#1 GTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGC 342 ************************************************************ consensus_14679#0 ATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAATCTGTTT 660 consensus_14679#1 ATCTGTTTGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCAAAAAAAAAAAAA 402 ***************************************************** consensus_14679#0 CGTGTTGATTTCTCACTTTCTGAATTGCTAAAAGCACTGCAATGTATTGATTGCGC 716 consensus_14679#1 AAAAAAAAAGAA-------------------------------------------- 414 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||