These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1996 fasta sequence [AATACTTTATCCTGTTGCTGATGCGACAACCTTCTTTACTGACTTGCATTATATGCTCCGTGTGATTTCTGCTGGAAACACAAGAACCGTGTGCCATAACCGGTTAAATCTTTTAGAGCATAAATTCAAATTTCATTTGATGTTAAACGCGGATAGGGAGTTTCTTGCCCAGAAGACTGCACCACATCGTGATTTTTACAATGTCAGGAAGGTTGATACTCATGTACACCACTCAGCGTGCATGAATCAAAAACACTTGCTGAGATTTATAAAATCCAAACTAAGGAAAGAACCTGATGAGGTTGTCATTTTCAGAGACGGCACTTATATGACTCTGAAGGAGGTTTTTGAGAGCTTGGACTTAACTGGGTATGACTTGAATGTTGATTTACTAGATGTCCATGCGGACAAAAGTACATTTCATCGTTTTGACAAATTCAACCTTAAGTACAATCCGTGTGGCCAAAGTAGGCTCAGAGAGATTTTCCTCAAACAGGACAATCTTATCCAAGGTCGTTTTCTTGCCGAGCTAACAAAGCAAGTTTTCTCCGACCTTACAGCAAGTAAATACCAGATGGCTGAATATAGGATTTCAATCTATGGGAGGAAGCAAAGTGAATGGGACAACCTTGCAAGCTGGATAGTGAACAATGAATTGTCCAGTGAAAATGTTGTCTGGCTGGTTCAGATCCCACGCTTATATAATGTGTACAAGGAAATGGGTATTGTTACATCATTCCAAACTCTTCTGGACAACATTTTCCTTCCTCTGTTTGAGGTCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGGTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAACAAAGCATATGCCTACACCTGAACAATGGACCAATGTCTTCAACCCAGCATTTTCATATTATGCATATTACTGCTATGCTAACTTATACACACTCAATAAGTTGCGTGAATCAAAAGGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAGGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAATCAACTTAAGGAAATCTCCTGTGCTTCAATATCTATACTATCTTGGCCAGATTGGTCTGGCAATGTCCCCATTAAGCAACAACTCCTTGTTTCTTGATTACCACCGGAATCCTTTCCCAATGTTTTTCCAACGAGGCCTGAATGTTTCCCTGTCAACGGATGATCCATTGCAAATTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCACTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAGGCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGAC-TTGA-TTTGGAGAGATGAGATGCGTC-TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTA-GATTA-GGAAGGATGAAGCGGCTCAGC-TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC-TTCGG-CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGCGAATAAAGTGGCGCCGCTTGTTTTGCTCCCCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CB642483 [AATACTTTATCCTGTTGCTGATGCGACAACCTTCTTTACTGACTTGCATTATATGCTCCGTGTGATTTCTGCTGGAAACACAAGAACCGTGTGCCATAACCGGTTAAATCTTTTAGAGCATAAATTCAAATTTCATTTGATGTTAAACGCGGATAGGGAGTTTCTTGCCCAGAAGACTGCACCACATCGTGATTTTTACAATGTCAGGAAGGTTGATACTCATGTACACCACTCAGCGTGCATGAATCAAAAACACTTGCTGAGATTTATAAAATCCAAACTAAGGAAAGAACCTGATGAGGTTGTCATTTTCAGAGACGGCACTTATATGACTCTGAAGGAGGTTTTTGAGAGCTTGGACTTAACTGGGTATGACTTGAATGTTGATTTACTAGATGTCCATGCGGACAAAAGTACATTTCATCGTTTTGACAAATTCAACCTTAAGTACAATCCGTGTGGCCAAAGTAGGCTCAGAGAGATTTTCCTCAAACAGGACAATCTTATCCAAGGTCGTTTTCTTGCCGAGCTAACAAAGCAAGTTTTCTCCGACCTTACAGCAAGTAAATACCAGATGGCTGAATATAGGATTTCAATCTATGGGAGGAAGCAAAGTGAATGGGACAACCTTGCAAGCTGGATAGTGAACAATGAATTGTCCAGTGAAAATGTTGTCTGGCTGGTTCAGATCCCACGCTTATATAATGTGTACAAGGAAATGGGTATTGTTACATCATTCCAAACTCTTCTGGACAACATTTTCCTTCCTCTGTTTGAGGTCACCATTGATCCAGCTTCTCATCCGCAGCTTCA ] [+] EMBL CB643461 [AATACCTTATAATGTTGCTGATGCGACAACCTTCTTTACTGACTTGCATTATATGCTCCGTGTGATTTCTGCTGGAAACACAAGAACCGTGTGCCATAACCGGTTAAATCTTTTAGAGCATAAATTCAAATTTCATTTGATGTTAAACGCGGATAGGGAGTTTCTTGCCCAGAAGACTGCACCACATCGTGATTTTTACAATGTCAGGAAGGTTGATACTCATGTACACCACTCAGCGTGCATGAATCAAAAACACTTGCTGAGATTTATAAAATCCAAACTAAGGAAAGAACCTGATGAGGTTGTCATTTTCAGAGACGGCACTTATATGACTCTGAAGGAGGTTTTTGAGAGCTTGGACTTAACTGGGTATGACTTGAATGTTGATTTACTAGATGTCCATGCGGACAAAAGTACATTTCATCGTTTTGACAAATTCAACCTTAAGTACAATCCGTGTGGCCAAAGTAGGCTCAGAGAGATTTTCCTCAAACAGGACAATCTTATCCAAGGTCGTTTTCTTGCCGAGCTAACAAAGCAAGTTTTCTCCGACCTTACAGCAAGTAAATACCAGATGGCTGAATATAGGATTTCAATCTATGGGAGGAAGCAAAGTGAATGGGACAACCTTGCAAGCTGGATAGTGAACAATGAATTGTCCAGTGAAAATGTTGTCTGGCTGGTTCAGATCCCACGCTTATATAATGTGTACAAGGAAATGGGTATTGTTACATCATTCCAAACTCTTCTGGACAACATTTTCCTTCCTCTGGTTGAGG ] [+] EMBL AK058281 [ GATTTACTAGATGCCCATGCGGACAAAAGTACATTTCATCGTTTTGACAAATTCAACCTTAAGTACAATCCGTGTGGCCAAAGTAGGCTCAGAGAGATTTTCCTCAAACAGGACAATCTTATCCAAGGTCGTTTTCTTGCCGAGCTAACAAAGCAAGTTTTCTCCGACCTTACAGCAAGTAAATACCAGATGGCTGAATATAGGATTTCAATCTATGGGAGGAAGCAAAGTGAATGGGACAACCTTGCAAGCTGGATAGTGAACAATGAATTGTCCAGTGAAAATGTTGTCTGGCTGGTTCAGATCCCACGCTTATATAATGTGTACAAGGAAATGGGTATTGTTACATCATTCCAAACCCTTCTGGACAACATTTTCCTTCCTCTGTTTGAGGTCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGGTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAACAAAGCATATGCCTACACCTGAACAATGGACCAATGTCTTCAACCCAGCATTTTCATATTATGCATATTACTGCTATGCTAACTTATACACACTCAATAAGTTGCGTGAATCAAAAGGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAGGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAATCAACTTAAGGAAATCTCCTGTGCTTCAATATCTATACTATCTTGGCCAGATTGGTCTGGCAATGTCCCCATTAAGCAACAACTCCTTGTTTCTTGATTACCACCGGAATCCTTTCCCAATGTTTTTCCAACGAGGCCTGAATGTTTCCCTGTCAACGGATGATCCATTGCAAATTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCACTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAGGCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGAC TTGA TTTGGAGAGATGAGATGCGTC TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGCGAATAAAGTGGCGCCGCTTGTT ] [+] EMBL CF324153 [ GAAAATGTTGTCTGGCTGGTTCAGATCCCACGCTTATATAATGTGTACAAGGAAATGGGTATTGTTACATCATTCCAAACTCTTCTGGACAACATTTTCCTTCCTCTGTTTGAGGTCACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGGTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAACAAAGCATATGCCTACACCTGAACAATGGACCAATGTCTTCAACCCAGCATTTTCATATTATGCATATTACTGCTATGCTAACTTATACACACTCAATAAGTTGCGTGAATCAAAAGGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAGGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAATCAACTTAAGGAAATCTCCTGTGCTTCAATATCTATACTATCTTGGCCAGATTGGTCTGGCAATGTCCCCATTAAGCAACAACTCCTTGTTTCTTGATTACCACCGGAATCCTTTCCCAATGTTTTTCCAACGAGGCCTGAATGTTTCCCTGTCAACGGAT ] [+] EMBL CA767547 [ CACAAT NAATTCCGTCC CATGCTGGCGAGGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAATCAACTTAAGGAAATCTCCCGTGCTTCAATATCTATACTATCTTGGCCAGATTGGTCTGGCAATGTCCCCATTAAGCAACAACTCCTTGTTTCTTGATTACCACCGGAATCCTTTCCCAATGTTTTTCCAACGAGGCCTGAATGTTTCCCTGTCAACGGATGATCCATTGCAAATTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCACTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAGGCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGAC TTGA TTTGGAGAGATGAGATGCGTC TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTNCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGNCCCCCAAAAGCNCAACCAAAAGTCCANCAAGATNTACNCAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGG ] [-] EMBL CB642484 [ AATGTTTTTCCAACGAGGCCTGAATGTTTCCCTGTCAACGGATGATCCATTGCAAATTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCACTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAGGCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGAC TTGA TTTGGAGAGATGAGATGCGTC TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGGGAATAAAGTGGCGCCGCTT ] [-] EMBL CB643462 [ CAAATTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCACTCTGGAAGCTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAGGCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGAC TTGA TTTGGAGAGATGAGATGCGTC TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATCCTCCa ] [-] EMBL CB671813 [ CAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCACTCTGGAAGGTCAGTTCTTGTGATTTATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAGGCACACTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGAC TTGA TTTGGAGAGATGAGATGCGTC TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGCGAATAAAGTGGCagggc ] [-] EMBL CB655846 [ ATTTCAAAAGAGGGCCTACAGGGATCGATATTCATAAACCTAATGTGCCTCACATCAGGGTTCAGTTTAGGGAC TTGA TTTGGAGAGATGAGATGCGTC TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGGCCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTCGGTTATGGGAAGTCAGCATGTGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATTCTCAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCT ] [+] EMBL AU093269 [ TACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAATGTGCCTCACATCAGGGTTCAGTTTAGGGAC TTGA TTTGGAGAGATGAGATGCGTC TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGNTCTTACTAGGATTAGGGAGGGATGAAGCGGCTCAGCTTGGGTNCTGGATTTTGGGGGTTAGTTTAGGGGANGCAGGC AACAATTGCTTTCGGCCGTGATTta ] [+] EMBL BI808754 [ CAGGGTTCA TTTAGGGACTTTGATTTTGGAGAGATGAGATGCGTCTTTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTCCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCCAAAAGCAC ACC AAAGTACACCAAGATATACCCCATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGCCAGCCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAAC TTGCATGTACTTTAACTGGTCTTACCCAGTTATACTCCTGAGAATGAAGTGGCCCCGCTTGTTTTGCTCCCCCAAAAAAAAAA ] [+] EMBL AU070672 [ TTTGGAGAGATGAGATGCGTC TTGTATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATATGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGCGAATAAAGTGGCGCCGCTTGTTTTGCaaaaaa ] [+] EMBL C97162 [ ACCTGGTGTATATGGCNCGGTT CCCTGGGAGTTACATTNCATGTTTGGTTATTGGAAGTCACCATGAGAAGTGTTGTGATACACATCGTGTCCGGNTTCCAAGCCGACGAGAGAG AACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGCGAATAAAGTGGCGCCGCTTGTTTTGCTCCCCAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL BE040523 [ GTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAGTGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTA GATTA GGAAGGATGAAGCGGCTCAGC TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGC TTCGG CGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGAGAATAAAGTGGCGCCGCTTGTTTTGCTCCCCAGAAAAAAAAAAAAAAAAAA ] consensusID : consensus_14682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence [AGAGACCGTTATCTTTTTAGAGAAGAGGTTGCTCCATGGGAGAAGGAGGTCATAAATGATCCCTGTACTCCAAAACCTGACCCCAATCCGTTCACCTATGTGCCTGAACCAAAATCAGAGCATGTTTTCCAAATGGTCGATGGTGTTGTCCATGTCTATGCAGATAAAGACTATACGGAAATACTTTATCCTGTTGCTGATGCGACAACCTTCTTTACTGACTTGCATTATATGCTCCGTGTGATTTCTGCTGGAAACACAAGAACCGTGTGCCATAACCGGTTAAATCTTTTAGAGCATGGAGTTTCTTGCCCAGAAGACTGCACCACATCGTGATTTTTACAATGTCAGGAAGGTTGATACTCATGTACACCACTCAGCGTGCATGAATCAAAAACACTTGCTGAGATTTATAAAATCCAAACTAAGGAAAGAACCTGATGAGGTTGTCATTTTCAGAGACGGCACTTATATGACTCTGAAGGAGGTTTTTGAGAGCTTGGACTTAACTGGGTATGACTTGAATGTTGATTTACTAGATGTCCATGCGGACAAAAGTACATTTCATCGTTTTGACAAATTCAACCTTAAGTACAATCCGTGTGGCCAAAGTAGGCTCAGAGAGATTTTCCTCAAACAGGACAATCTTATCCAAGGTCGTTTTCTTGCCGAGCTAACAAAGCAAGTTTTCTCCGACCTTACAGCAAGTAAATACCAGATGGCTGAATATAGGATTTC] [+] EMBL CB671812 [AGAGACCGTTATCTTTTTAGAGAAGAGGTTGCTCCATGGGAGAAGGAGGTCATAAATGATCCCTGTACTCCAAAACCTGACCCCAATCCGTTCACCTATGTGCCTGAACCAAAATCAGAGCATGTTTTCCAAATGGTCGATGGTGTTGTCCATGTCTATGCAGATAAAGACTATACGGAAATACTTTATCCTGTTGCTGATGCGACAACCTTCTTTACTGACTTGCATTATATGCTCCGTGTGATTTCTGCTGGAAACACAAGAACCGTGTGCCATAACCGGTTAAATCTTTTAGAGCATGGAGTTTCTTGCCCAGAAGACTGCACCACATCGTGATTTTTACAATGTCAGGAAGGTTGATACTCATGTACACCACTCAGCGTGCATGAATCAAAAACACTTGCTGAGATTTATAAAATCCAAACTAAGGAAAGAACCTGATGAGGTTGTCATTTTCAGAGACGGCACTTATATGACTCTGAAGGAGGTTTTTGAGAGCTTGGACTTAACTGGGTATGACTTGAATGTTGATTTACTAGATGTCCATGCGGACAAAAGTACATTTCATCGTTTTGACAAATTCAACCTTAAGTACAATCCGTGTGGCCAAAGTAGGCTCAGAGAGATTTTCCTCAAACAGGACAATCTTATCCAAGGTCGTTTTCTTGCCGAGCTAACAAAGCAAGTTTTCTCCGACCTTACAGCAAGTAAATACCAGATGGCTGAATATAGGATTTC] consensusID : consensus_14682#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [GGATTNGGGAAAANAGAATTTTTTATNGGGTTAAATTTNAAGGNAAAGGGGGCGGGAATTAANNAGNGGGGNCNNNGGGGNGGTTTTTTAAAAATAANGCCCNAAAAAACCGGGTNAATTAGGGGATTAATTGGGNNANANGNNNNGTTTTTTTAAAACTAAAAAAATTTTTTTNAACCGGGGGGGGGGGACCAGTAAANAANTAACTNGGGTATATGGGGCGGTTGCCAGGGGAGTAACATTTAATGTTGGGTTATTGGGAAGTCAGCATGAGAGTGTTGTGAAACACATCGTGTCCGGGTTCCAAGCGGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTAGATTAGGAAGGATGAAGCGGCTCAGCTGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGCTTCGGCGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGCGAATAAAGTGGCGCCGCTTGTT] [-] EMBL BE229045 [GGATTNGGGAAAANAGAATTTTTTATNGGGTTAAATTTNAAGGNAAAGGGGGCGGGAATTAANNAGNGGGGNCNNNGGGGNGGTTTTTTAAAAATAANGCCCNAAAAAACCGGGTNAATTAGGGGATTAATTGGGNNANANGNNNNGTTTTTTTAAAACTAAAAAAATTTTTTTNAACCGGGGGGGGGGGACCAGTAAANAANTAACTNGGGTATATGGGGCGGTTGCCAGGGGAGTAACATTTAATGTTGGGTTATTGGGAAGTCAGCATGAGAGTGTTGTGAAACACATCGTGTCCGGGTTCCAAGCGGACGAGAGAGAAACTTCAAACCAAGTAGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTTACTAGATTAGGAAGGATGAAGCGGCTCAGCTGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGCTTCGGCGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGCGAATAAAGTGGCGCCGCTTGTT] consensusID : consensus_14682#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [TAAAGCAGGTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAACAAAGCATATGCCTACACCTGAACAATGGACCAATGTCTTCAACCCAGCATTTTCATATTATGCATATTACTGCTATGCTAACTTATACACACTCAATAAGTTGCGTGAATCNNAAGGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAGGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAAATCAACTTAAGGGAAATCTCCTGTGGCTTCAATATCCATTACTAATCTTTGGCCCAGAATTGGGTCTGGCAATGTTCCCCATTAAAGCCAACAAACTCCTTGTTTTCTTTGAATTAACCACCCGGGAAATCCCTCTTCCCCAATTGTTTTTTTCCCAACCAAGGCCTGAAATGTTTCCCCTTGTTCCACCGGGATGGATCCCATTTGCCCAATTCCCCC] [+] EMBL AF093476 [TAAAGCAGGTTGTAGGGTTAGATTTGGTTGATGATGAGAGTAAACCTGAAAGGCGTCCAACAAAGCATATGCCTACACCTGAACAATGGACCAATGTCTTCAACCCAGCATTTTCATATTATGCATATTACTGCTATGCTAACTTATACACACTCAATAAGTTGCGTGAATCNNAAGGGATGACCACAATCAAATTCCGTCCACATGCTGGCGAGGCTGGAGACATCGATCACTTGGCAGCAACATTTCTTCTTTGTCACAATATATCGCATGGAAATCAACTTAAGGGAAATCTCCTGTGGCTTCAATATCCATTACTAATCTTTGGCCCAGAATTGGGTCTGGCAATGTTCCCCATTAAAGCCAACAAACTCCTTGTTTTCTTTGAATTAACCACCCGGGAAATCCCTCTTCCCCAATTGTTTTTTTCCCAACCAAGGCCTGAAATGTTTCCCCTTGTTCCACCGGGATGGATCCCATTTGCCCAATTCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14682#0 AATACTTTATCCTGTTGCTGATGCGACAACCTTCTTTACTGACTTGCATTATATGCTCCG 60 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 TGTGATTTCTGCTGGAAACACAAGAACCGTGTGCCATAACCGGTTAAATCTTTTAGAGCA 120 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 TAAATTCAAATTTCATTTGATGTTAAACGCGGATAGGGAGTTTCTTGCCCAGAAGACTGC 180 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 ACCACATCGTGATTTTTACAATGTCAGGAAGGTTGATACTCATGTACACCACTCAGCGTG 240 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 CATGAATCAAAAACACTTGCTGAGATTTATAAAATCCAAACTAAGGAAAGAACCTGATGA 300 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 GGTTGTCATTTTCAGAGACGGCACTTATATGACTCTGAAGGAGGTTTTTGAGAGCTTGGA 360 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 CTTAACTGGGTATGACTTGAATGTTGATTTACTAGATGTCCATGCGGACAAAAGTACATT 420 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 TCATCGTTTTGACAAATTCAACCTTAAGTACAATCCGTGTGGCCAAAGTAGGCTCAGAGA 480 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 GATTTTCCTCAAACAGGACAATCTTATCCAAGGTCGTTTTCTTGCCGAGCTAACAAAGCA 540 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 AGTTTTCTCCGACCTTACAGCAAGTAAATACCAGATGGCTGAATATAGGATTTCAATCTA 600 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 TGGGAGGAAGCAAAGTGAATGGGACAACCTTGCAAGCTGGATAGTGAACAATGAATTGTC 660 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 CAGTGAAAATGTTGTCTGGCTGGTTCAGATCCCACGCTTATATAATGTGTACAAGGAAAT 720 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 GGGTATTGTTACATCATTCCAAACTCTTCTGGACAACATTTTCCTTCCTCTGTTTGAGGT 780 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ----------AGAGACCGTTATCTTTTTAGAGAAGAGGTTGCTCCATGGGAGAAGGAGGT 50 consensus_14682#0 CACCATTGATCCAGCTTCTCATCCGCAGCTTCACGTCTTCCTAAAGCAGGTTGTAGGGTT 840 consensus_14682#3 -----------------------------------------TAAAGCAGGTTGTAGGGTT 19 consensus_14682#2 ----------------------------GGATTNGGGAAAANAGAATTTTTTATNGGGTT 32 consensus_14682#1 CATAAATGATCCCTGTACTCCAAAACCTGACCCCAATCCGTTCACCTATGTGCCTGAACC 110 * * consensus_14682#0 AGATTTGGTTGA---------------TGATGAGAGTAAACCTGAAAGGCGTCCAACAAA 885 consensus_14682#3 AGATTTGGTTGA---------------TGATGAGAGTAAACCTGAAAGGCGTCCAACAAA 64 consensus_14682#2 AAATTTNAAGGNAAAGGGGGCGGGAATTAANNAGNGGGGNCNNNGGGGNGGTTTTTTAAA 92 consensus_14682#1 AAAATCAGAGCATGTTTTCCAAATGGTCGATG-GTGTTGTCCATGTCTATG-CAGATAAA 168 * * * * * * * * *** consensus_14682#0 GCATATGCCTACA----CCTGAACAAT----GGACCAAT---GTCTTCAACCCAGCATTT 934 consensus_14682#3 GCATATGCCTACA----CCTGAACAAT----GGACCAAT---GTCTTCAACCCAGCATTT 113 consensus_14682#2 AATAANGCCCNAAAAAACCGGGTNAATTAGGGGATTAATTGGGNNANANGNNNNGTTTTT 152 consensus_14682#1 GACTATACGGAAATAC-TTTATCCTGTTGCTGATGCGACAACCTTCTTTACTGACTTGCA 227 * * * * * * consensus_14682#0 TCATA--TTATGCAT-ATTACTGCT----ATGCTAA---CTTATACA--CACTCAATAAG 982 consensus_14682#3 TCATA--TTATGCAT-ATTACTGCT----ATGCTAA---CTTATACA--CACTCAATAAG 161 consensus_14682#2 TTAAAA-CTAAAAAA-ATTTTTTTN----AACCGGG---GGGGGGGGACCAGTAAANAAN 203 consensus_14682#1 TTATATGCTCCGTGTGATTTCTGCTGGAAACACAAGAACCGTGTGCCATAACCGGTTAAA 287 * * * * *** * * * * ** consensus_14682#0 TTGCGTGAATCAAAAGGGATGACCACAATCAAATTCCGTC------CACATGCTGGCGAG 1036 consensus_14682#3 TTGCGTGAATCNNAAGGGATGACCACAATCAAATTCCGTC------CACATGCTGGCGAG 215 consensus_14682#2 TAACTNGGGTATATGGGGCGGTTGCCAGGGGAGTAACATT------TA-ATGTTGGGTTA 256 consensus_14682#1 TCTTTTAGAGCATGGAGTTTCTTGCCCAGAAGACTGCACCACATCGTGATTTTTACAATG 347 * * * * * * consensus_14682#0 GCTGGAGA----CATCGATCACTTGGCAGCAAC--ATTTCTTCTTTGTCACAATATATCG 1090 consensus_14682#3 GCTGGAGA----CATCGATCACTTGGCAGCAAC--ATTTCTTCTTTGTCACAATATATCG 269 consensus_14682#2 TTGGGAAGTCAGCATGAGAGTGTTGTGAAACAC--ATCGTGTCCGGGTTCCAAGCGGACG 314 consensus_14682#1 TCAGGAAG----GTTGATACTCATGTACACCACTCAGCGTGCATGAATCAAAAACACTTG 403 *** * ** ** * * ** * consensus_14682#0 CATGGA-----A----TCAACTTAAGG-AAATCTCCTGTG----CTTCAAT---ATCTAT 1133 consensus_14682#3 CATGGA-----AA---TCAACTTAAGGGAAATCTCCTGTGG---CTTCAAT---ATCCAT 315 consensus_14682#2 AGAGAG-----AAACTTCAAACCAAGTAGTGCCCCCAAAAA---GCACAACCAAAAGTAC 366 consensus_14682#1 CTGAGATTTATAAAATCCAAACTAAGGAAAGAACCTGATGAGGTTGTCATTTTCAGAGAC 463 * *** *** * ** * * consensus_14682#0 -ACTA--TCTTGGCC----AGATTGGTCTGGCAATGT-CCCCAT--TAAG--CAACAA-C 1180 consensus_14682#3 TACTAATCTTTGGCCC-AGAATTGGGTCTGGCAATGTTCCCCAT--TAAAGCCAACAAAC 372 consensus_14682#2 AACAAGATATACACAATAAAATTGGATCTTACTAGATTAGGAAGGATGAAGCGGCTCAGC 426 consensus_14682#1 GGCACTTATATGACTCTGAAGGAGGTTTTTGAGAGCTTGGACTTAACTGG--GTATGACT 521 * * * * * * * * * consensus_14682#0 TCCTTGTTT--CTT---GATTA-CCACCGGAATCCTTTCCCAATGTTTTTCCAACGAGGC 1234 consensus_14682#3 TCCTTGTTT--TCTTTGAATTAACCACCCGGGAAATCCCTC-----TTCCCCAAT----- 420 consensus_14682#2 TGGGTGCTGGATTTTGGGGTGTAGTGTAGGGGAGGCAGGCAAACAATTGCTTCGGCGTGA 486 consensus_14682#1 TGAATGTTGATTTACTAGATGTCCATGCGGACAAAAGTACATTTCATCGTTTTGACAAAT 581 * ** * * * * consensus_14682#0 CTGAATGTTTCCCTGTCAACGGATG----ATCCATT-GCAAATTCACCTGACAAAAGAGC 1289 consensus_14682#3 -TGTTTTTTTCCCAACCAAGGCCTG----AAATGTT-TCCCCTTGTTCCACCGGGATGGA 474 consensus_14682#2 TTGTAATTGTGCAGCCTCTCGTTTGTGAAGGATGCTATACCAACATTGCATGTACTTTAA 546 consensus_14682#1 TCAACCTTAAGTACAATCCGTGTGGCCAAAGTAGGCTCAGAGAGATTTTCCTCAAACAGG 641 * * consensus_14682#0 CATTGGTGGAAGAA--TACAGCATTGCTGCTTCACTCTGGAAGCTCAGTTCTTGTGATTT 1347 consensus_14682#3 TCCCATTTGCCCAA--TTCCCCC------------------------------------- 495 consensus_14682#2 CTGGTCTTACACAG--TTATACTCCTGCGAATAAAGTGGCGCCGCTTGTT---------- 594 consensus_14682#1 ACAATCTTATCCAAGGTCGTTTTCTTGCCGAGCTAACAAAGCAAGTTTTCTCCGACCTTA 701 * * * consensus_14682#0 ATGTGAAATAGCTAGAAACTCTGTCTATCAATCAGGGTTTTCACATGCTCTCAAGGCACA 1407 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 CAGCAAGTAAATACCAGATGGCTGAATATAGGATTTC----------------------- 738 consensus_14682#0 CTGGATTGGCAAGAACTATTACAAAAGAGGACCTACAGGGAACGATATTCATAAAACTAA 1467 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 TGTGCCTCACATCAGGGTTCAGTTTAGGGACTTGATTTGGAGAGATGAGATGCGTCTTGT 1527 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 ATACCTAAACAATGTCATCTTACCTGACGAGGTGGACCAGTAACATGTACCTGGTGTATA 1587 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 TGGCGCGGTTGCCATGGGAGTTACATTTCATGTTTGGTTATTGGAAGTCAGCATGAGAAG 1647 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 TGTTGTGATACACATCGTGTCCGGGTTCCAAGCCGACGAGAGAGAAACTTCAAACCAAGT 1707 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 AGTGCCCCCAAAAAGCACAACCAAAAGTACAACAAGATATACACAATAAAATTGGATCTT 1767 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 ACTAGATTAGGAAGGATGAAGCGGCTCAGCTGGGTGCTGGATTTTGGGGTGTAGTGTAGG 1827 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 GGAGGCAGGCAAACAATTGCTTCGGCGTGATTGTAATTGTGCAGCCTCTCGTTTGTGAAG 1887 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 GATGCTATACCAACATTGCATGTACTTTAACTGGTCTTACACAGTTATACTCCTGCGAAT 1947 consensus_14682#3 ------------------------------------------------------------ consensus_14682#2 ------------------------------------------------------------ consensus_14682#1 ------------------------------------------------------------ consensus_14682#0 AAAGTGGCGCCGCTTGTTTTGCTCCCCAAAAAAAAAAAAAAAAAAAAAA 1996 consensus_14682#3 ------------------------------------------------- consensus_14682#2 ------------------------------------------------- consensus_14682#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||