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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1931 fasta sequence
[GATTTACAGCCACCCACACCACCAAGGCACCAACGCATCCATCCAAACCGCCGCCCGCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGG-CCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACA-TTTTTTTTGAAGAGAGATTCTGTATATAAAGGACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGGTACAGCAGTTACGGGGTTCTTTGTCATAGGTCATGATTGTGCCCACAAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAAGCATGACAGACATCATGCCAAGACAAACATGTTGATAGAAGATACTGCATG-GCAACCCGTTTTTTCAAAGGAGTTCAGAACAAATTCC-TTACTGAGGAAAGCAATGATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCACTGGTTAATTTGGCACTTTGATCTAAAAAAATTCAGACCAAATGAGCTCCCAAGGGTGAAAATAAGCTTAGCATCTGTGTTAGCGTTCATGGCAATTGGATGGCCACTGATTATTCTCAAATCAGGAATAGCTGGATGGTTCAAGTTCTGGTTCATG-CCATGGATGGTTTATCACTTTTGGATGAGCACC-TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC-GGCA-CAGTTCACTGTGA-CTATCCTC-GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG-AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA--TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTCTAATTCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CB636012 [GATTTACAGCCACCCACACCACCAAGGCACCAACGCATCCATCCAAACCGCCGCCCGCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGG CCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTTCA TTTTTTTTtga ]
[+] EMBL CB639562 [GATTTACAGCCACCCACACCACCAAGGCACCAACGCATCCATCCAAACCGCCGCCCGCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGG CCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACA TTTTTTTTGAAGAGAGATTCTGTATATAAAGGACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTA ]
[+] EMBL CB631344 [ GCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGGCCCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACA TTTTTTTTGAAGAGAGATTCTGTATATAAAGAACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGGTACAGCAGTTACGGGGTTCTTTGTCATAGGTCATGATTGTGCCCACAAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAAGCATGACAGACATCATGCCAAGACAAACATGTTGATAGAAGATACTGCATGNGC ACCCGTTTTTTCAAAGGAGTTCAGAACAAATTCCTTTACTGAGGAAAGC ATGATATTTGCTTATGGTCCTATCAGGCCATG ]
[+] EMBL CB630701 [ GCCGCCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGGCCCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACA TTTTTTTTGAAGAGAGATTCTGTATATAAAGAACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGGTACAGCAGTTACGGGGTTCTTTGTCATAGGTCATGATTGTGCCCACAAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAAGCATGACAGACATCATGCCAAGACAAACATGTTGATAGAAGATACTGCATG GCA ]
[+] EMBL CB651418 [ GCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGG CCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACATTTTTTTTTGAAGAGAGATTCTGTATATAAAGGACAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGATCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTTGATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGGTACAGCAGTTACGGGGTTCTTTGTCATAGGTCATGATTGTGCCCACAAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAAGCATGACAGACATCATGCCAAGACAAACATGTTGATAGAAGATACTGCATG GCAACCCGTTTTTTCAAAGGAGTTCAGAACAAATTCC TTACTGAGGAAAGCAA ]
[-] EMBL BU572349 [ ACGGGGTTCTTTG CATAGGTCATGATTGTGGCCACCAATCATTTTCGAGGAATAAGCTGGTGGAAGATATTG TGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATG ACCTTGGAGATTTAAGCATGACAGACATCATG CAAG CAAACATGTTGATAGAAGATACTGCATG GCAACCCGTTTTTTCAAAGGAGTTCAGAACAAATTCC TTACTGAGGAAAGCAATGATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCACTGGTTAATTTGGCACTTTGATCTAAAAAAATTCAGACCAAATGAGCTCCCAAGGGTGAAAATAAGCTTAGCATCTGTGTTAGCGTTCATGGCAATTGGATGGCCACTGATTATTCTCAAATCAGGAATAGCTGGATGGTTCAAGTTAAGGTTCATGCCCATGGATGGTTTATCACTTTTGGATGAGCACCTTTTACGAGGGTACCTCgggccgcga ]
[+] EMBL AK060449 [ AATTCAGACCAAATGAGCTCCCAGGGGTGAAAATAAGCTTAGCATCTGTGCTAGCGTTCATGGCAATTGGATGGCCACTGATTATTCTCAAATCAGGAATAGCTGGATGGTTCAAGTTCTGGTTCATG CCATGGATGGTTTATCACTTTTGGATGAGCACC TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC GGCA CAGTTCACTGTGA CTATCCTC GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA AAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTCTAAT ]
[-] EMBL CB630702 [ GCAATTGGATGGCCACTGATTATTCTCAAATCAGGAATAGCTGGATGGTTCAAGTTCTGGTTCATG CCATGGATGGTTTATCACTTTTGGATGAGCACC TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC GGCA CAGTTCACTGTGA CTATCCTC GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATCCCTTGGAGGCTTGGAATATAAATAGGGGCACGCTAGTGCTACAGCCATTTGCTNCTa ]
[-] EMBL CB631345 [ AGCTGGATGGTTCAAGTTCTGGTTCATG CCATGGATGGTTTATCACTTTTGGATGAGCACC TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC GGCA CAGTTCACTGTGA CTATCCTC GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGA ]
[-] EMBL CB651419 [ ATCACTTTTGGATGAGCACC TTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAGACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAAC GGCA CAGTTCACTGTGA CTATCCTC GGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTTTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTCT ]
[+] EMBL AU076263 [ TGCACAGGCNCAATTAAACGGGCACCAGTTCACTGTGACCTATCCTCGGGTGGATAAAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCTCCNAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAACCAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCNTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG ANCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCAaaaaaaa ]
[-] EMBL CB636013 [ AACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGCAAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCAa ]
[+] EMBL BE230212 [ ATGCCATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCCCAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGTTGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCTAACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATG ]
[+] EMBL CB685798 [ ATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACACGGCTTCAG AGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTATAAA TTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCA ]
[+] EMBL AU029781 [ GTTACNCGGCTTCAGAACCGGTTCCCAAAAGTTCATTTAGAANAAAGGCTGTCAGAAGTTACCCTAAAAAATTTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAATATGTATTGTANACCTTGGAGGCTTGGAATATAAATATGGGCNCGCTAGTGCTANAGCCATTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTCTAANTCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[AAAAAAAAAAAGAAAAAGAAGAAAAAAAAAAAAAAAAAAAAAACTCGAGACCAGCCTCGGGCCGAATTCGGCACGAGGCCGCCGCCCGCCGCCGCCCGGCGGAGTCGTCTTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGGCCCCGCTGCTACCAAAAAGGGCAATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGATCCCCTCCACGCGGCGGGTGGGAGGGTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGAAAGAACGCTTTCCCACGGAGAGCAACCGGCGGGGCCCCGGCAGGTACATTTTTTTTGAAAAGAGATTCTGTATATAAAGGAAAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCACCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGGGAGAAAATTATGGATTCAAACGAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGCATTTGAAATCGATGATCTAAAATCTGGGACTTCTGTTTTAATATCACCTACTTCTTA]
[+] EMBL CB680429 [AAAAAAAAAAAGAAAAAGAAGAAAAAAAAAAAAAAAAAAAAAACTCGAGACCAGCCTCGGGCCGAATTCGGCACGAGGCCGCCGCCCGCCGCCGCCCGGCGGAGTCGTCTTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGCCCGCCGGGCCCCGCTGCTACCAAAAAGGGCAATGGCGACGGCGAGCGGCGTCTCCACTCCCCTGCAGATCCCCTCCACGCGGCGGGTGGGAGGGTGCTGCTCCCGCCCCGGCAGCCCGGCCCCGGGAAAGAACGCTTTCCCACGGAGAGCAACCGGCGGGGCCCCGGCAGGTACATTTTTTTTGAAAAGAGATTCTGTATATAAAGGAAAGAGTTGTCATCAATTTTTACCATTGAAACAAAGCGGAAGGTTGCAAGCACCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGAAAAACGGAAGCAAATGGGAGAAAATTATGGATTCAAACGAATTGGAGAACAGTTGCCAGATAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGCATTTGAAATCGATGATCTAAAATCTGGGACTTCTGTTTTAATATCACCTACTTCTTA]
consensusID : consensus_14684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[CCTGNGCATGGACTGGGTACAGCAGTTACGGGGTTCTTTGTCATAGGGTCATGATTGTGCCACAAATCATTTTCGANGAATAACTGGGTGGAAGATATTGTTGGAACTCTANCTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAACATGACAGACATCATGCCAAGACAAACATGTTGATANAANATACTGCATGGCAACCCGTTTTTTCAAAGGANTTCAGAACAAATCCTNACTGANGAAAGCAATGATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCCTNGGTTAATTGGNCCTTTGATNTTAAAAAATTCAAACAAATGANCTCCCCCGGGTGAAAATAANCTTAACATCTGTGCTAACGTTCATGGCAATTGGATGGGCACTGATTATTCTCANATCANGAATAACTGGATGGTNCNAGTTCTGGTTCATGCCATGGATGGTTTATCACTTTTGGATGANCACCTTTACAATGGTACATCACACTGCTCCTCATTTTNCNTCCAAA]
[+] EMBL BE228465 [CCTGNGCATGGACTGGGTACAGCAGTTACGGGGTTCTTTGTCATAGGGTCATGATTGTGCCACAAATCATTTTCGANGAATAACTGGGTGGAAGATATTGTTGGAACTCTANCTTCTTGCCATTGATATACCCCTATGAACCTTGGAGATTTAACATGACAGACATCATGCCAAGACAAACATGTTGATANAANATACTGCATGGCAACCCGTTTTTTCAAAGGANTTCAGAACAAATCCTNACTGANGAAAGCAATGATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCCTNGGTTAATTGGNCCTTTGATNTTAAAAAATTCAAACAAATGANCTCCCCCGGGTGAAAATAANCTTAACATCTGTGCTAACGTTCATGGCAATTGGATGGGCACTGATTATTCTCANATCANGAATAACTGGATGGTNCNAGTTCTGGTTCATGCCATGGATGGTTTATCACTTTTGGATGANCACCTTTACAATGGTACATCACACTGCTCCTCATTTTNCNTCCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14684#0 GATTTACAGCCACCCACACCACCAAGGCACCAACGCATCCATCCAAACCGCCGCCCGCCG 60
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CCGCCCGGCGTCGTCGTCGTCTCCACGCTCCCTCGCCACCGCGCGCCCTCCCGGCCTAGC 120
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CCGCCGGGCCCCGCTGCTACCAGAGAGGGCGATGGCGACGGCGAGCGGCGTCTCCACTCC 180
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CCTGCAGCTCCCCTCCACGCGGCGGGTGGGCGGCTGCTGCTCCCGCCCCGGCAGCCCGGC 240
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CCCGGGCAAGAACGCGTTCCCGCGGAGAGCAGCCGGTGGTGCCCCGGCAGGTACATTTTT 300
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 TTTGAAGAGAGATTCTGTATATAAAGGACAGAGTTGTCATCAATTTTTACCATTGAAACA 360
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 AAGCGGAAGGTTGCAAGCAGCAGTTCTGCCTGTTACTCCACCTTTGTTAGATGATGAAGA 420
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 AAAACGGAAGCAAATGTGTGAAGATTATGGATTCAAACAAATTGGAGAACAGTTGCCAGA 480
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 TAATGTTACTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGGTATTTGAAATCGATGA 540
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 TCTAAAATCTTGGACTTCTGTTTTAATATCAGTTACTTCTTATGCTCTTGGTATTTTCTT 600
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 -----------------------------------------AAAAAAAAAAAGAAAAAGA 19
consensus_14684#0 GATATCAAAAGCTCCCTGGTATCTTCTTCCCTTAGCCTGGGCATGGACTGG-TACAGCAG 659
consensus_14684#2 -----------------------------------CCTGNGCATGGACTGGGTACAGCAG 25
consensus_14684#1 AGAAAAAAAAAAAAAAAAAAAAAACTCGAGACCAGCCTCGGGCCGAATTCGGCACGA-GG 78
*** * * * * * ** *
consensus_14684#0 TTACGGGGTTCTTTGTCATAGG-TCATGATTGTGCCCACAAATCATTTTCGAGGAATAAG 718
consensus_14684#2 TTACGGGGTTCTTTGTCATAGGGTCATGATTGTGCC-ACAAATCATTTTCGANGAATAAC 84
consensus_14684#1 CCGCCGCCCGCCGCCGCCCGGCGGAGTCGTCTTCTCCACGCTCCCTCGCCACCGCGCGCC 138
* * * * * * * * * ** * * * *
consensus_14684#0 CTGGTGGAAGATATTGTTGGAACTCTAGCTTTCTTGCCATTGATATACCCCTATGAACCT 778
consensus_14684#2 TGGGTGGAAGATATTGTTGGAACTCTANCTT-CTTGCCATTGATATACCCCTATGAACCT 143
consensus_14684#1 CTCCCGGCCTAGCCCGCCGGGCCCCGCTGCTACCAAAAAGGGCAATGGCGACGGCGAGCG 198
** * * ** * * * * * * ** * * *
consensus_14684#0 TGGAGATTTAAGCATGACAGACATCATGC-CAAGACAAACATGTTGATAGAAGATACTGC 837
consensus_14684#2 TGGAGATTTAA-CATGACAGACATCATGC-CAAGACAAACATGTTGATANAANATACTGC 201
consensus_14684#1 GCGTCTCCACTCCCCTGCAGATCCCCTCCACGCGGCGGGTGGGAGGGTGCTGCTCCCGCC 258
* * **** * * * * * * * * * * *
consensus_14684#0 ATGGCAACCCGTTTTTTCAAAGGAG---TTCAGAACAAATTCCTTACTGAGGAAAGCAAT 894
consensus_14684#2 ATGGCAACCCGTTTTTTCAAAGGAN---TTCAGAACAAAT-CCTNACTGANGAAAGCAAT 257
consensus_14684#1 CCGGCAGCCCGGCCCCGGGAAAGAACGCTTTCCCACGGAG-AGCAACCGGCGGG-GCCCC 316
**** **** ** ** ** ** * ** * * **
consensus_14684#0 GATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCACTGGT-TAATTTGGC 953
consensus_14684#2 GATATTTGCTTATGGTCCTATCAGGCCATGGATGTCTATTGCTCCTNGGT-TAATTGGNC 316
consensus_14684#1 GGCAGGTACATTTTTTTTGAAAAGAGATTCTGTATATAAAGGAAAGAGTTGTCATCAATT 376
* * * * * * * * ** * * * ** * * * * **
consensus_14684#0 ACTTTGATCTAAAAAAATTCAGACCAAATGAGCTCC---CAAGGGTGAAAATAAGCTTAG 1010
consensus_14684#2 -CTTTGATNTTAAAAAATTCAAAC-AAATGANCTCC---CCCGGGTGAAAATAANCTTAA 371
consensus_14684#1 TTTACCATTGAAACAAAGCGGAAGGTTGCAAGCACCAGTTCTGCCTGTTACTCCACCTTT 436
* ** ** *** * * * ** * ** * * * *
consensus_14684#0 CATCTGTGTTAGCGTTCATGGCAATTGGATGGCCACTGATTATT--CTCAAATCAG---- 1064
consensus_14684#2 CATCTGTGCTAACGTTCATGGCAATTGGATGGGCACTGATTATT--CTCANATCAN---- 425
consensus_14684#1 GTTAGATGATGAAGAAAAACGGAAGCAAATGGGAGAAAATTATGGATTCAAACGAATTGG 496
* ** * * * * ** **** ***** *** * *
consensus_14684#0 -GAATAGCTG---GATGGTTCAAGTTCTGGTTCATGCCATGGATGGTTTATC-------A 1113
consensus_14684#2 -GAATAACTG---GATGGTNCNAGTTCTGGTTCATGCCATGGATGGTTTATC-------A 474
consensus_14684#1 AGAACAGTTGCCAGATAATGTTA-CTCTTAAAGATGTAATGGATAGTCTGCCTAAAGAGG 555
*** * ** *** * * *** *** ****** ** * *
consensus_14684#0 CTTTTGGA--TGAGCACCTTTACGATGGTACATCACACTGCTCCTCATATACCATTCAAG 1171
consensus_14684#2 CTTTTGGA--TGANCACCTTTACAATGGTACATCACACTGCTCCTCATTTTNCNTCCAAA 532
consensus_14684#1 CATTTGAAATCGATGATCTAAAATCTGGGACTTCTGTTTTAATATCACCTACTTCTTA-- 613
* **** * ** * ** * *** ** ** * *** * *
consensus_14684#0 ACATCAGAAGAGTGGAATGCTGCACAGGCACAATTAAACGGCACAGTTCACTGTGACTAT 1231
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CCTCGGTGGATAGAGATACTTTGTCATGACATAAATGTACATGTTCCACACCATATTTCT 1291
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CCAAGAATTCCAAGTTATAACCTTCGTGCTGCCTATGATTCCATAAAACAGAACTGGGGC 1351
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 AAGTACATCAATGAAGCCAGCTGGAACTGGCGCTTGATGAAGACAATACTGACTAAATGC 1411
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CATGTTTACGACAAGGATAGATACTATGTTCCCTTTGATGAGGTTGCGCCTGAGGAATCC 1471
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CAACCAATTAAATTCCTCAAGAAGGTCATGCCAGATTATGCATGATGAAATCAATACTGT 1531
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 TGGCTGGTGTTTGCATAGAGAAACAATCACAATTACTTAGTGAGTCACATCCTAAATTCT 1591
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 AACTAGAACGGCACATGCCCGAAATTTTGACTGCAAATTGCTTTGTTGGATTGTGTTACA 1651
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 CGGCTTCAGAGCGGTTGCCAAAAGTTCATTTAGAAGAAAGGCTGTCAGAAGTTATCCTAT 1711
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 AAATTTAAAAATAGTGCGCTTCCAAACCAAGCGCCTTTTTCAGTTGTTCGGTACATCAAA 1771
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 TATGTATTGTATACCTTGGAGGCTTGGAATATAAATATGGGCACGCTAGTGCTACAGCCA 1831
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 TTTGCTACTGATGTACCAGCAACCATTGGTTTGTACCTTGATTAATTCATGACGATGGTC 1891
consensus_14684#2 ------------------------------------------------------------
consensus_14684#1 ------------------------------------------------------------
consensus_14684#0 TAATTCTGTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA 1931
consensus_14684#2 ----------------------------------------
consensus_14684#1 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||