These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14686#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 736 fasta sequence [TCTTTTTAAGTTTTTTTAAAACAGACCTGTCCTTTTCTTGTCCTTTTTTTTTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTGAAACAAAACTCACAAAAGGTTGCACCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB674248 [TCTTTTTAAGTTTTTTTAAAACAGACCTGTCCTTTTCTTGTCCTTTTTTTTTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTGAAACAAAACTCACAAAAGGTTGCACCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATC ] [-] EMBL AU174715 [ttTTTTTTTTTTTTTTTAAAACAGACCTGNCCTTTTCTTGTTCTTTTTTTTTTAATAGAACAAGCAATAGGGGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAANGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGNGATGCTTCGGNAAGGATCTTGCTCTCTCT ] [+] EMBL CB665728 [ AGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTGAAACAAAACTCACAAAAGGTTGCACCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] consensusID : consensus_14686#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 708 fasta sequence [TTTTCCCTTTTTTAAAGCAAAACAGACCTGTCCTTTTCTTGTT-CTTT-TTTTTTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC-TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB669486 [TTTTCCCTTTTTTAAAGCAAAACAGACCTGTCCTTTTCTTGTT CTTT TTTTTTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCCAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB671087 [ AAAGTAAAACAGACCTGTCCTTTTCTTGTTCCTTT TTTTTTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB670296 [ CAGACCTGTCCTTTTCTTGTT CTTTCTTTTTTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [-] EMBL CA767376 [ GTT CTTT TTTTTTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCATCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCGCCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCATGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACccctt ] [+] EMBL CB618592 [ ATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCATCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB618665 [ AGCAATAGGTGGTATTTATCTTATCTTCTTTCCCATCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCACTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGACCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAAAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB672217 [ GGTGGNATTTATCTTATCTCCTTT CCACCCTTTCTGCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB669156 [ TCTTTCCCCTCCTTTCTGCTGGCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAAATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACT CTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB675768 [ GCTGTCAATGTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB664495 [ TCAATGTTCATAAATTAATCTCATTCCCACAAACTACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB670256 [ GTTCATAAATTAATCTCATTCCCTCAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB669195 [ TTCCTTTCATTTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGGCAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTC TGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] consensusID : consensus_14686#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [AGACCTGTCCTTTTCTTGTCCCTTAATATTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATCTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB659778 [AGACCTGTCCTTTTCTTGTCCCTTAATATTTAATAGAACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATCTTCATAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGGGATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTAAGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGATGTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] consensusID : consensus_14686#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [CGTTCCTGACGTGTCGCTGGAGGTCCCCAATAAATACTATATCCGACATGCCAATTTAGGGACAACTTCAAGCAACTGAAGGACCTGATTTTCGACCTCTGCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] [+] EMBL CB661673 [CGTTCCTGACGTGTCGCTGGAGGTCCCCAATAAATACTATATCCGACATGCCAATTTAGGGACAACTTCAAGCAACTGAAGGACCTGATTTTCGACCTCTGCTTTTACAGTACTCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATATAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCTACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGTTGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCACCAGGATAGAGGAGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14686#0 -TCTTTTTAAGTTTTTTTAAAACAGACCTGTCCTTTTCTTGTCCTTTTTTTTTTAATAGA 59 consensus_14686#2 -----------------------AGACCTGTCCTTTTCTTGTCCCTTAATATTTAATAGA 37 consensus_14686#1 TTTTCCCTTTTTTAAAGCAAAACAGACCTGTCCTTTTCTTGTTCTTTTTTTTTTAATAGA 60 consensus_14686#3 ------------------------------------------------------------ consensus_14686#0 ACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCA 119 consensus_14686#2 ACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATCTTCA 97 consensus_14686#1 ACAAGCAATAGGTGGTATTTATCTTATCTTCTTTCCCACCCTTTCTGCTGTCAATGTTCA 120 consensus_14686#3 ------------------------------------------------------------ consensus_14686#0 TAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGG 179 consensus_14686#2 TAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGG 157 consensus_14686#1 TAAATTAATCTCATTCCCACAAAATACATTTGAACCTAATTTTCATGGTTCGAAAGTAGG 180 consensus_14686#3 ------------------------------------------------------------ consensus_14686#0 GATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTA 239 consensus_14686#2 GATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTA 217 consensus_14686#1 GATTTGAGCAGTAACTCCCCATGTTGCCTGATAAAACGTGCGCGCTGTGATGCTTCGGTA 240 consensus_14686#3 ------------------------------------------------------------ consensus_14686#0 AGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGAT 299 consensus_14686#2 AGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGAT 277 consensus_14686#1 AGGATCTTGCTCTCTCTTCCTCTTCAGATAAGACATTATATTCTCCACCTCTGACTTGAT 300 consensus_14686#3 -------CGTTCCTGACGTGTCGCTGGA-GGTCCCCAATAAATACTATATCCGAC---AT 49 * ** ** ** * *** * * ** *** ** consensus_14686#0 GTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCAT 359 consensus_14686#2 GTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTG--------------------- 316 consensus_14686#1 GTCCAAATATAATTGGTTTGCACTCTCCCTATCCCTCTGTACACCGTCCATTCCTTTCAT 360 consensus_14686#3 GCCAATTTAGGGACAACTT-CAAGCAACTGAAGGACCTG--------------------- 87 * * * ** ** ** * * * *** consensus_14686#0 TTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGG 419 consensus_14686#2 ------------------------------------------------------------ consensus_14686#1 TTCAATTGGTTTTCCAAATAGATAGTATAGCCGACCTGGTAATTTAGGTAGAACAGCAGG 420 consensus_14686#3 ------------------------------------------------------------ consensus_14686#0 CAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCTGAAACAAAACTCACA 479 consensus_14686#2 ---------------ATTTCCTTCCTCTCCTTTTACAGTACTCCT--------------- 346 consensus_14686#1 CAAGTGTAAGACCTGATTTCCTTCCTCTCCTTTTACAGTACTCCT--------------- 465 consensus_14686#3 ---------------ATTTTCGACCTCTGCTTTTACAGTACTCCT--------------- 117 **** * ***** **************** consensus_14686#0 AAAGGTTGCACCCTTACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATA 539 consensus_14686#2 --------------TACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATA 392 consensus_14686#1 --------------TACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATA 511 consensus_14686#3 --------------TACTCCTGGACAATCTTGGTTGAACGACTCTATTGTTTCTCTGATA 163 ********************************************** consensus_14686#0 TAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCT 599 consensus_14686#2 TAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCT 452 consensus_14686#1 TAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCT 571 consensus_14686#3 TAAGGGATGTTCTTTAGTTCATTGTAATCCAGAACTATCTCTAACATGTCATCTTCTCCT 223 ************************************************************ consensus_14686#0 ACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGT 659 consensus_14686#2 ACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGT 512 consensus_14686#1 ACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGT 631 consensus_14686#3 ACACAACCGAATGGTATGACAGTAACTCCAAACTGTGCTGCCATTCTTACAAATTCTGGT 283 ************************************************************ consensus_14686#0 TGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCA 719 consensus_14686#2 TGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCA 572 consensus_14686#1 TGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCA 691 consensus_14686#3 TGATCTGGCCAAAACAACTGGTAGTCTTCATCCTTTCTATGTAGAGCTTCTCGAATACCA 343 ************************************************************ consensus_14686#0 CCAGGATAGAGGAGAAC 736 consensus_14686#2 CCAGGATAGAGGAGAAC 589 consensus_14686#1 CCAGGATAGAGGAGAAC 708 consensus_14686#3 CCAGGATAGAGGAGAAC 360 ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||