These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1752 fasta sequence [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTAAACTTGATTTTTTATGTATATTTCAATGATACTCTTTTCAAGTAGGCCACCTGTTCACCCATTATGACACTTTTTATTTTCATCCTTGTTAGTGTTTACTAAAGTTTACTTAATTATGGCAGCATTAGTTCTTAATTGAATAATGTCACTTCTGAACATCATATAATGGTGGATTGCTGTTTGTGCAAGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGGGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGAATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGTTCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTGCTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCTACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACAGGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACTTCGAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATG-CCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGACAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTTTAGGTTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAATCAGGTTCTCGGCCGCTAAAAAAAAAA] [+] EMBL AK099882 [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTAAACTTGATTTTTTATGTATATTTCAATGATACTCTTTTCAAGTAGGCCACCTGTTCACCCATTATGACACTTTTTATTTTCATCCTTGTTAGTGTTTACTAAAGTTTACTTAATTATGGCAGCATTAGTTCTTAATTGAATAATGTCACTTCTGAACATCATATAATGGTGGATTGCTGTTTGTGCAAGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGGGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGAATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGTTCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTGCTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCTACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACAGGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACTTCGAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATG CCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGACAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTTTAGGTTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAATCAGGTTCT ] [+] EMBL BI806933 [ CTATAGTTGCT CTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTC AAAGGATGTCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGACAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCNCGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTTTAGATTTCC AAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAAT AAGCAATTCACCAATCAGGTTCTCGGCCGCTAAAAAAAAAA] consensusID : consensus_14690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1542 fasta sequence [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGAATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGTTCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTGCTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCTACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACAGGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACTTC-GAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA-AGCCTTACGTTGCCTGA-ACCAACTG-AAT-CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA-CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC-AGTTGCAGTAA-TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAATCAGGTTCT] [+] EMBL AK066867 [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGAATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGTTCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTGCTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCTACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACAGGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACTTC GAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAATCAGGTTCT] [+] EMBL CF305613 [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATG ] [-] EMBL CB629745 [ ccCTAAGAACTCCATCCCCACCTGGGATCCCTCTTGATCTCTTCACCAACTTC AAAATTAAATCCTTCAATGCGTGCGCAAACCCCCACTTGGCCCTTGCTGCTATAGTTGCTGCTGGGATTAATGGACTCAGGAGA ACCCTTACTTTCCCTGA ACCAACTG AAT CAACCCCTGCAGGTTATCCCTCCAACTCCAAGCTCAAAAGGATCCCGAAGGACTTGATGGAATCTTTCGAACCCCTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCCCTCCCGTTATTGCTGTACGAAAGGCTGAGATTGATCACTACGAGAAGACCCCTGCAGCATTCCCCGATCTCATTCCCCGTTATTAGGGTGAACCACTAGTTAGTTCCCCGGAGCAAAGAGGATTACGAGTAAATTATTACAACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCCCTGTACTTGC AGTTCCAGTGG TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAA ] [+] EMBL BI810205 [ GGATACCTC TGATCTCGCCAGCAACTTCGGAAATGAAAT CTTCGATGCGTGCGCAAACCCGCACTT GGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT C AACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CCAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATTGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAAAAGGGCACTTGGC AACTCATCCTTCTAGAGAAAATAAAGCAATTCACCAAaaaaa ] [-] EMBL CB636474 [ C GAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCTTGA ACCAATTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGT CTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTGATTGAATAACTGGTTT ] [+] EMBL CF339963 [ gagtagaaaTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAA ] [+] EMBL CF340089 [ GTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAA ] [+] EMBL CF340738 [ GTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AG ] [+] EMBL CF339284 [ GTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTGCTGCTGGGATTGATGGACTCAGGAGA AGCCTTACGTTGCCTGA ACCAACTG AAT CAAACCCTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATCGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAA TTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAA ] [+] EMBL BM420697 [ TTGATGGACTCCGGAGAGAGCCTTACGTTGCCTGAGACCCACTGNTATCCTTACCCTGCCGGTTATGCCTCCCACTCCCAGCTCCAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGACCAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATTGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGNTACTAGGGTGAAACACTAGTTAGTTCCCCGGAGCCAAGAGGATTACGAGTGAATTACTACGACCCCCGAAATTGCTTATTCTCGCGTCCTTTTCCCCTGTACTTCCNATTCCCAGTAA TTTTTTTTTGATTGAAAAAaaaaa ] [-] EMBL AI978457 [ nnngn nnnAACTG AAT CANNNNNTGCAGGNNATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAATCTGTCGAAGCACTAGCTGCAGA CAAAATCATGCATGAATTGATCGGCGATAAACTTGTCACTGCCGTTATTGCTGTACGAAAGGCTGAGATTGATCACTACGAGAAGAACCCTGCAGCATTCGCCGATCTCATTCACCGTTACTAGGGTGAAACACTAGTTAGTTCCACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGC AGTTGCAGTAATTTTTTTTTTGATTGAATAACTGGTTTTAGATTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAAA ] consensusID : consensus_14690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAG-CACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAGGGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAGGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAAGCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTNNNNNANCCTGANNNNNNT] [+] EMBL CF324150 [TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAG CACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAAGGGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAG ] [+] EMBL AI978456 [ GGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGTCACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTAAAAAAGTAGTAAGTGGTGAAA AGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAGCGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAAGCTGGAAAAGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTNNNNNANCCTGANNNNNNT] consensusID : consensus_14690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence [GGGGGGTTTAATCCCTCCCAAACTCCAAAGCTCCAAAAGGGGATTGCCCGAAGGACCTTGATGGAAATCTGTCGAAGCACTAGCTGCAGACAAAAACCATGCAGGAATTTGACCGGGCGATAAACTTTGGTCACTTCCCGTTATTGCTGGTACAAAGGGCTGAGACCGATCACTACCGAGAAGAACCCTGCAAGAATTCGCCGATCTAATTCACCGTTACTAGGGTGAAACACTAGGTTAGTCCCCACGGAGCAAAGGGGATTCCGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTGCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTT] [-] EMBL D43229 [GGGGGGTTTAATCCCTCCCAAACTCCAAAGCTCCAAAAGGGGATTGCCCGAAGGACCTTGATGGAAATCTGTCGAAGCACTAGCTGCAGACAAAAACCATGCAGGAATTTGACCGGGCGATAAACTTTGGTCACTTCCCGTTATTGCTGGTACAAAGGGCTGAGACCGATCACTACCGAGAAGAACCCTGCAAGAATTCGCCGATCTAATTCACCGTTACTAGGGTGAAACACTAGGTTAGTCCCCACGGAGCAAAGGGGATTCCGAGTGAATTACTACGACCCACGAAATTGCTTATTCTCGCGTCCTTTGCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTGATTGAATAACTGGTTT] consensusID : consensus_14690#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [TCNCTGCGACAAGAACCCTGCANCATTCGCCGATCTCATTCACCGTGGACTAGGGGTGANACACTANTTANTTCCACGGGAGCAAAGAGGATTACGANTGAATTACTACGACCCNCGAAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTTTGATTGAATAACTGGGTTTTAGATTTCCNAAAAAAGGGGCGCTTGGCAAACTCATCCTNCTAGAGAANNNGGGGGCAATTCACCAATCAGGGTTCTCGG] [+] EMBL BE228744 [TCNCTGCGACAAGAACCCTGCANCATTCGCCGATCTCATTCACCGTGGACTAGGGGTGANACACTANTTANTTCCACGGGAGCAAAGAGGATTACGANTGAATTACTACGACCCNCGAAAATTGCTTATTCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTTTGATTGAATAACTGGGTTTTAGATTTCCNAAAAAAGGGGCGCTTGGCAAACTCATCCTNCTAGAGAANNNGGGGGCAATTCACCAATCAGGGTTCTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTGATACTTCAGGTC 60 consensus_14690#1 ------------------------------------------------------------ consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 AACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTAGGAAAAAGGGTA 120 consensus_14690#1 ------------------------------------------------------------ consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 TTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCCCAGCAGATGGAA 180 consensus_14690#1 ------------------------------------------------------------ consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 CAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAACACTATTGAGGC 240 consensus_14690#1 ------------TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGTCGTCTGGATTG 48 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 TTCCATGGTAAACTTGATTTTTTATGTATATTTCAATGATACTCTTTTCAAGTAGGCCAC 300 consensus_14690#1 ATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTATGAAATTGCTA 108 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 CTGTTCACCCATTATGACACTTTTTATTTTCATCCTTGTTAGTGTTTACTAAAGTTTACT 360 consensus_14690#1 GGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATTTACTGATGGCC 168 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 TAATTATGGCAGCATTAGTTCTTAATTGAATAATGTCACTTCTGAACATCATATAATGGT 420 consensus_14690#1 CAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCCGGATATGTCAA 228 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 GGATTGCTGTTTGTGCAAGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAA 480 consensus_14690#1 CACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGAAATGCATATAA 288 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 GGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGGGAAAAGTCACAAAAGTTC 540 consensus_14690#1 GGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGTCACAAAAGTTC 348 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 TGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTA 600 consensus_14690#1 TGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTTTTCCTACGTA 408 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 AAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCT 660 consensus_14690#1 AAAAAGTAGTAAGTGGTGAAAAGGAGCTGTGGGTCCCATTTGACAATACCCCCTACTGCT 468 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 CAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAG 720 consensus_14690#1 CAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATATACTTCTCTTAAAG 528 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 CGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAG 780 consensus_14690#1 CGGCGGAAATTGTGGTTGAGCAGCTGCATGCTGAATCTGGAAAAGGGCAGTTTGAGATAG 588 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 CCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTA 840 consensus_14690#1 CCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAACTGATATATGCCCGTGAGATTA 648 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 TTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGA 900 consensus_14690#1 TTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTTTTCTTCCAAAACCTGACTTGA 708 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 ATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGT 960 consensus_14690#1 ATGATATTGGATCCGGTTCTCATGTGCATCTGAGTTTATGGGAATTCGATCAGAATGTGT 768 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 TCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTG 1020 consensus_14690#1 TCATGGGATCAAGTGAATATAATTACTATGGAATGTCAAGAATCGGAGAAAGCTTCCTTG 828 consensus_14690#2 ------------------------------------------------------------ consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 CTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCT 1080 consensus_14690#1 CTGGAGTATATCTCCATCTTCCATCAATCTTGGCATTCACTGCTCCTCACCCAAACAGCT 888 consensus_14690#2 -----------------------TACCATTATCTGAACAAGATGTGCTCTTTGTTCGAGT 37 consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 ACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACA 1140 consensus_14690#1 ACAACCGAATTCAGCCAAACACATGGAGTGGTGCATATCAGTGCTGGGGGAAGGAGAACA 948 consensus_14690#2 CGTCTGGATTGATACTTCAGGTCAACATAGGTGCCGCGTTGTGCCAGCCGGAAGATTTTA 97 consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 GGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACT 1200 consensus_14690#1 GGGAGGCTCCACTGAGAACTGCATGCCCACCTGGGATACCTCTTGATCTCGTCAGCAACT 1008 consensus_14690#2 TGAAATTGCTAGGAAAAAGGGTATTGGTCTGACTTTTGCATCGATGGGAATGACTTCATT 157 consensus_14690#3 ------------------------------------------------------------ consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 TCGAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTG 1260 consensus_14690#1 TCGAAATTAAATCCTTCGATGCGTGCGCAAACCCGCACTTGGGCCTTGCTGCTATAGTTG 1068 consensus_14690#2 TACTGATGGCCCAGCAGATGGAACAAACCTTACTGGTGTAGGAGAGATCAGGCTTATGCC 217 consensus_14690#3 --------------------------------------------------GGGGGGTTTA 10 consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 CTGCTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACC 1320 consensus_14690#1 CTGCTGGGATTGATGGACTCAGGAGAAGCCTTACGTTGCCTGAACCAACTGAATCAAACC 1128 consensus_14690#2 GGATATGTCAACACTATTGAGGCTTCCATGGTCAAGACGCGAAGAAATGGTAATGGCTGA 277 consensus_14690#3 ATCCCTCCCAAACTCCAAAGCTCCAAAAGGGGATTGCCCGAAGGACCTTGATGGAAATCT 70 consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 CTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAA-TCT 1379 consensus_14690#1 CTGCAGGTTATGCCTCCAACTCCAAGCTCAAAAGGATGCCGAAGGACTTGATGGAA-TCT 1187 consensus_14690#2 AATGCATATAAGGCCTGGGGAAGCCTGGGAATACTGTCCCAGAAATACCTTGAGAAAAGC 337 consensus_14690#3 GTCGAAGCACTAGCTGCAGACAAAAACCATGCAGGAATTTGACCG---GGCGATAAACTT 127 consensus_14690#4 ------------------------------------------------------------ consensus_14690#0 GTCGAAGCACTAGCTGCAGACAAAA-TCATGCATGAATTGATC-----GGCGATAAACTT 1433 consensus_14690#1 GTCGAAGCACTAGCTGCAGACAAAA-TCATGCATGAATTGATC-----GGCGATAAACTT 1241 consensus_14690#2 ACAAAAGTTCTGCTAGATGAGTTTAATGTGACAATGATGGCAGGTTTTGAGAATGAATTT 397 consensus_14690#3 TGGTCACTTCCCGTTATTGCTGGTAC--AAAGGGCTGAGACCGATCACTACCGAGAAGAA 185 consensus_14690#4 --------------------------------------------TCNCTGC-GACAAGAA 15 consensus_14690#0 --GTCACTGCC-GTTATTGCTG-TAC--GAAAGGCTGAGATCGATCACTAC-GAGAAGAA 1486 consensus_14690#1 --GTCACTGCC-GTTATTGCTG-TAC--GAAAGGCTGAGATCGATCACTAC-GAGAAGAA 1294 consensus_14690#2 TTCCTACGTAAAAAAGTAGTAAGTGGTGAAAGGGGAGCTGTGGGTCCCATTTGACAATAC 457 ** * ** ** * consensus_14690#3 CCCTGCAAGAATTCGCCGATCTAATTC-ACCGTT-ACTAGGG-TGAAACACTAGGT---T 239 consensus_14690#4 CCCTGCANCA-TTCGCCGATCTCATTC-ACCGTGGACTAGGGGTGANACACTAN-T---T 69 consensus_14690#0 CCCTGCAGCA-TTCGCCGATCTCATTC-ACCGTT-ACTAGGG-TGAAACACTAG-T---T 1538 consensus_14690#1 CCCTGCAGCA-TTCGCCGATCTCATTC-ACCGTT-ACTAGGG-TGAAACACTAG-T---T 1346 consensus_14690#2 CCC--CTACTGCTCAACTACAGCATTCGATGGTGCATCATCTGTGTTGCAAGAAGTATAT 515 *** * ** * * **** * ** * * ** ** * * * consensus_14690#3 AGTCCCCACGGAGCAAAGGGGATTCCGAGTGAATTACTACGACCCACGAAA-TTGCTTAT 298 consensus_14690#4 ANTTCCACGGGAGCAAAGAGGATTACGANTGAATTACTACGACCCNCGAAAATTGCTTAT 129 consensus_14690#0 AGTTCC-ACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAA-TTGCTTAT 1596 consensus_14690#1 AGTTCC-ACGGAGCAAAGAGGATTACGAGTGAATTACTACGACCCACGAAA-TTGCTTAT 1404 consensus_14690#2 ACTTCTCTTAAGGCGGCGGAAATTGTGGTTGAGCAGCTGCA---TGCTGAAGCTGGAAA- 571 * * * ** * *** * *** ** * * ** ** * consensus_14690#3 TCTCGCGTCCTTTGCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTT--GATTGAATAAC 356 consensus_14690#4 TCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTTTTGATTGAATAAC 189 consensus_14690#0 TCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTT--GATTGAATAAC 1654 consensus_14690#1 TCTCGCGTCCTTTTCCGCTGTACTTGCAGTTGCAGTAATTTTTTTTT--GATTGAATAAC 1462 consensus_14690#2 ----AGGGCAGTTTGAGATAGCCTTGAAGTATGTGTTGTGCACTCTTGCTGCTGACAAAC 627 * * ** * * **** *** ** * * ** *** *** consensus_14690#3 TGGTTT------------------------------------------------------ 362 consensus_14690#4 TGGGTTTTAGATTTCCNAAAAAAGGGGCGCTTGGCAAACTCATCCTNCTAGAGAANNNGG 249 consensus_14690#0 TGGTTTTAGG--TTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAA 1712 consensus_14690#1 TGGTTTTAGA--TTTCCAAAAAAAGGGCACTTGGCAAACTCATCCTTCTAGAGAAAATAA 1520 consensus_14690#2 TGATATATGCCCGTGAGATTATTAAATCAGTTGCTCGAAAGCATGGGCTACTTGCAACTT 687 ** * consensus_14690#3 ----------------------------------------- consensus_14690#4 GGGCAATTCACCAATCAGGGTTCTCGG-------------- 276 consensus_14690#0 AG-CAATTCACCAATCAGGTTCTCGGCCGCTAAAAAAAAAA 1752 consensus_14690#1 AG-CAATTCACCAATCAGGTTCT------------------ 1542 consensus_14690#2 TTCTNNNNNANCCTGANNNNNNT------------------ 710 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||