Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14697 cluster # 14697       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14697#0 length = 1025 sequences # 15  
consensus_14697#1 length = 654 sequences # 1  
consensus_14697#2 length = 422 sequences # 1  

consensusID : consensus_14697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1025
fasta sequence
                              [CGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGCGACA-NGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTCACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCT-CCTTGTTT-ACGAC-AT-CAC-AAAGAGGCAGAGCTTCGACAATGTCCACAGGTGGC-TTCGTGAGCTCCGCGACCATGCCGACTCGAGCATTGTTATCATGA-TGGT-CGGTAATAAGTCTGATTTGA-TTCATCTAA-GGGCTGTCTCCGAGGATGAAGGTAAGGCATTGGCTGAAAAGGAGGGGC-TGTTTTTTCTTGAGACAT-CAGCTATGGAGGCCGTGAATGTGGAGGAAGCCTTTCAGACTATCAT-CACAGAGGTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTGCTCCGCT-GCCTTCCCAGGGTAAAACTAT-CAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTAC-TTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTATACAATTCAAACAATATGTGAGCTGCCAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS2151A             [CGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGCGACA NGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTCANCCGCAACCANTTCTCCCTCGACTCCAAGTCCACCATCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSS2176A             [CGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGNTCACGAGTACTCGTACCTNTTCAAGATGGTGCTGATCGGCGACA NGGCGTCGGCAAGTNTAATATCCTCTCCCGCTTCACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSS2177A             [CGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGCGACA NGGCGTCGGCAAGTCTAATATCCTCTCCCGNTTCACCCGCAACCATTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTTACTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSS2213A             [CGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGCGACA NGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTCACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCT CCTTGTTT ACGNCAAT CAC AAAGng                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSRGP2               [     CTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGCGACACGGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTCACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCT CCTTGTTT ACGAC AT CAC AAAGAGGCAGAGCTTCGACAATGTCCACAGGTGGC TTCGTGAGCTCCGCGACCATGCCGACTCGAGCATTGTTATCATGA TGGT CGGTAATAAGTCTGATTTGA TTCATCTAA GGGCTGTCTCCGAGGATGAAGGTAAGGCATTGGCTGAAAAGGAGGGGC TGTTTTTTCTTGAGACAT CAGCTATGGAGGCCGTGAATGTGGAGGAAGCCTTTCAGACTATCAT CACAGAGGTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTCGTCCGCT GCCTTCCCAGGGTAAAACTAT CAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGNAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGG                                                                                                                                                                                                                          ]
[+] EMBL OSS14839A            [                                     GTGCCCGGAGGAGGTGAGGCGAGATGGGCGNGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGNGACA NGNCGTCGNNAAGTCTAATATCCTCTCCCGNTTCACCCGCAACCACTTCTCCCTNGACTCCAAGTCCACCATNGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGNGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCT CCTTGTTT ACGAC AT CAC AAAGAGGCAGAGCTTCGACAATGTCCACAGGTGGCTTTCGTGAGCTCCGCGACCATGCCGACTCGAGCATTGTTATCATGATTGGTCCGGTAATAAGTCTGATTTGATTTCATCTAAGGGGTTGTTTCCGAGGnt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL C98278               [                                                                                                                                                                                                                                                                       AGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCT CCTTGTTT ACGAC AT CAC AAAGAGGCAGAGCTTCGACAATGTCCACAGGTGGC TTCGTGAGCTCCGCGACCATGCCGACTCGAGCATTGTTATCATGA TGGT CGGTAATAAGTCTGATTTGA TTCATCTAA GGGCTGTCTCCGAGGATGAAGGTAAGGCATTGGCTGAAAANGAGGGGC TGTTTTTTCTTGAGACAT CAGCTATGGAGGCCGTGAATGTGGAGGAAGCCTTTCAGACTATCAT CACAGAGGTCTATGGCATTGTTAACAGGNAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTGCTCCGCTGGCCTTCCCAGGGTAAAACTAT CAGCATTGACAGCGCTGCAGGANACACAAAGAGGGCATGCNGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCANATTGTAGAGAGCCAGGTGTGNGATTCGCGGGTNGACTCGGAGCAGAGTGATCNTAAATGGTTTng                                                                                                                                                                                                                             ]
[+] EMBL CA999749             [                                                                                                                                                                                                                                                                                 GAGAGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCT CCTTGTTT ACGAC AT CAC AAAGAGGCAGAGCTTCGACAATGTCCACAGGTGGC TTCGTGAGCTCCGCGACCATGCCGACTCGAGCATTGTTATCATGA TGGT CGGTAATAAGTCTGATTTGA TTCATCTAA GGGCTGTCTCCGAGGATGAAGGTAAGGCATTGGCTGAAAAGGAGGGGC TGTTTTTTCTTGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU101943             [                                                                                                                                                                                                                                                                                                                                 GCTCTCCCTTGTTTNCCGCC ATCCACAAAAGAGGCAGAGCTTCGACAATGTCCACAGGTGGC TTCGTGGANTCCGCGACCATGCCGACTCGAGCATTGTTATCATGA TGGT CGGTAATAAGTCTGATTTGA TTCATCTAA GGGCTGTCTCCGAGGATGAAGGTAAGGCATTGGCTGAAAAGGAGGGGC TGTTTTTTCTTGAGACAT CAGCTATGGAGGCCNTGAATGTGGAGGAAGCCTTTCAGACTNTCAT CACAGAGGTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTG TCCGCT GCCTTCCCAGGGTAAAACTAT CAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTAC TTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTATACAATTCAAACAATATGTGAGCTGCCAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU096722             [                                                                                                                                                                                                                                                                                                                                                                      GAGCTTCGACAATGTCCACAGGTGGC TTCGTGGANTCCGCGACCATGCCGACTCGAGCATTGTTATCATGA TGGT CGGTAATAAGTCTGATTTGA TTCATCTAA GGGCTGTCTCCGAGGATGAAGGTAAGGCATTGGCTGAAAAGGAGGGGC TGTTTTTTCTTGAGACAT CAGCTATGGAGGCCGTGAATGTGGAGGAAGCCTTTCAGACTATCAT CACAGAGGTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTG TCCGCT GCCTTCCCAGGGTAAAACTAT CAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTAC TTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTATACAATTCAAACAATATGTGAGCTGCCAAAAAAAAAAAAAA        ]
[+] EMBL CB096872             [                                                                                                                                                                                                                                                                                                                                                                                                                          CTCGAGCATTGTTATCATGA TGGT CGGTAATAAGTCTGATTTGA TTCATCTAA GGGCTGTCTCCGAGGATGAAGGTAAGGCATTGGCTGAAAAGGAGGGGC TGTTTTTTCTTGAGACAT CAGCTATGGAGGCCGTGAATGTGGAGGAAGCCTTTCAGACTATCAT CACAGAGGTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTGCTCCGCT GCCTTCCCAGGGTAAAACTAT CAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTACTTTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCGGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTAT                                                ]
[+] EMBL AU108297             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTTGA TTCATCTAA GGGCTNTCTCCGAGGATGNAGGTAAGGCATTGGCTGAAAAGGAGGGGC TGTTTTTTCTTGAGACAT CAGCTATGGAGGCCGTGAATGTGGAGGAAGCCTTTCAGACTATCAT CNCAGAGGTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTG TCCGCT GCCTTCCCAGGGTAAAACTAT CAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTNCAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTAC TTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTATACAATTCAAACAATATGTGAGCTGCCAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL C98279               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAGGTAAGGCATTGGCTGAAAAGGAGGNGCTTTTTTTTTCTTGAGACATCCAGCTATGGAGNCCGTGAATGTGGAGGAACCCTTTCAGACTATCATCCACAGAGGNCTATGGCATTGTTAACAGGAAAGCACTGGCCNCCAAAGAAGCAGCTGCTGCTTCTGCTCCGCT GCCTTCCCAGGGTAAAACTNTCCAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTNTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTAC TTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTATACAATTCAAACAATATGTGAGCTGCCAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA999703             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGGCCGTGAATGTGGAGGAAGCCTTTCAGACTATCAT CACAGAGGTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTGCTCCGCT GCCTTCCCAGGGTAAAACTAT CAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTAC TTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTATACAATTCAAAC                                     ]
[-] EMBL CF305423             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGGAAGCCTTTCAGACTATCAT CACAGAGGTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTGCTCCGCT GCCTTCCCAGGGTAAAACTAT CAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTAC TTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTCTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTATACAATTCAACCAAaaaaaaaa                           ]


>consensus_14697#0 CGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAG ATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGCGAC ANGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTCACCCGCAACCACTTCTCCCTCGACT CCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGAGGGCAAAACAA TAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTT ACTACCGTGGCGCTGTTGGGGCTCTCCTTGTTTACGACATCACAAAGAGGCAGAGCTTCG ACAATGTCCACAGGTGGCTTCGTGAGCTCCGCGACCATGCCGACTCGAGCATTGTTATCA TGATGGTCGGTAATAAGTCTGATTTGATTCATCTAAGGGCTGTCTCCGAGGATGAAGGTA AGGCATTGGCTGAAAAGGAGGGGCTGTTTTTTCTTGAGACATCAGCTATGGAGGCCGTGA ATGTGGAGGAAGCCTTTCAGACTATCATCACAGAGGTCTATGGCATTGTTAACAGGAAAG CACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTGCTCCGCTGCCTTCCCAGGGTAAAACTA TCAGCATTGACAGCGCTGCAGGAAACACAAAGAGGGCATGCTGCTCTGCTTGATATGTAC AATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGG AGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTACTTTTTTTTTTTCAGTTGCGTGA ACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAG ATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGC AATATATCTCAGATTATACAATTCAAACAATATGTGAGCTGCCAAAAAAAAAAAAAAAAA AAAAA



consensusID : consensus_14697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [TTTCCCTTTCCTAGTCTTCTTCTCCGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGCGACAGCGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTCACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCTCCTTGTTTACGACATCACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTACTTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGAT]

[+] EMBL AK120316             [TTTCCCTTTCCTAGTCTTCTTCTCCGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGCGGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTGTTCAAGATGGTGCTGATCGGCGACAGCGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTCACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAATCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGAGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCTCCTTGTTTACGACATCACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCATATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTACTTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGAT]


>consensus_14697#1 TTTCCCTTTCCTAGTCTTCTTCTCCGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGC GGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTG TTCAAGATGGTGCTGATCGGCGACAGCGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTC ACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAA TCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAG AGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCTCCTTGTTTAC GACATCACAAAGAGGGCATGCTGCTCTGCTTGATATGTACAATGGAGCGTTCAACATCAT ATTGTAGAGAGCCAGGTGTGAGATTCGCGGGTAGACTCGGAGCATAGTGATCTTAAATGG TTTGGAGGCAAGTCCTACTTTTTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCT GCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTCAT TCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGAT



consensusID : consensus_14697#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence
                              [GCGGTGCCGCGGTGTTCGGCGCTAGCGGGGGTATAGAGGAACCGCTAGGTCGAGGCGATGTTGTGGGACAGCAGGCTGCACGGAATANCANCCATAGGAGGGCCACTGGCCTGTCTCCTGCCTTGAGTATGTACCCACTGGAGTCGTTCAACCACTCACTATTTGTATGATGAGCCACGGTGTGATGATTCGCCGGGTATGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTACTCTNTTGTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCCAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACACGCAACTATAGCTGCAATATATCTCAGATTATACAATTCAAAAAAAAAA]

[+] EMBL BQ908104             [GCGGTGCCGCGGTGTTCGGCGCTAGCGGGGGTATAGAGGAACCGCTAGGTCGAGGCGATGTTGTGGGACAGCAGGCTGCACGGAATANCANCCATAGGAGGGCCACTGGCCTGTCTCCTGCCTTGAGTATGTACCCACTGGAGTCGTTCAACCACTCACTATTTGTATGATGAGCCACGGTGTGATGATTCGCCGGGTATGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGTCCTACTCTNTTGTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCCAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCGTTCTGATTATACACGCAACTATAGCTGCAATATATCTCAGATTATACAATTCAAAAAAAAAA]


>consensus_14697#2 GCGGTGCCGCGGTGTTCGGCGCTAGCGGGGGTATAGAGGAACCGCTAGGTCGAGGCGATG TTGTGGGACAGCAGGCTGCACGGAATANCANCCATAGGAGGGCCACTGGCCTGTCTCCTG CCTTGAGTATGTACCCACTGGAGTCGTTCAACCACTCACTATTTGTATGATGAGCCACGG TGTGATGATTCGCCGGGTATGACTCGGAGCATAGTGATCTTAAATGGTTTGGAGGCAAGT CCTACTCTNTTGTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAGCTGCAGTTGCAG TTTGTTCAGTGTTTCCTAATCCAAAGTTAGATGTGTGTATTAGGATTCATTCCATTTCCG TTCTGATTATACACGCAACTATAGCTGCAATATATCTCAGATTATACAATTCAAAAAAAA AA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14697#0      ------------------------CGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGC 36
consensus_14697#1      TTTCCCTTTCCTAGTCTTCTTCTCCGCCACTCCATCGGCAAGGAGGAAGATCTCGGAGGC 60
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      GGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTG 96
consensus_14697#1      GGTGCCCGGAGGAGGTGAGGCGAGATGGGCGGGCGGGTGGATCACGAGTACTCGTACCTG 120
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      TTCAAGATGGTGCTGATCGGCGACAN-GGCGTCGGCAAGTCTAATATCCTCTCCCGCTTC 155
consensus_14697#1      TTCAAGATGGTGCTGATCGGCGACAGCGGCGTCGGCAAGTCTAATATCCTCTCCCGCTTC 180
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      ACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAA 215
consensus_14697#1      ACCCGCAACCACTTCTCCCTCGACTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCAAA 240
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      TCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAG 275
consensus_14697#1      TCCCTGCAGATGGAGGGCAAAACAATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAG 300
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      AGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCTCCTTGTTTAC 335
consensus_14697#1      AGATATCGTGCCATCACAAGTGCTTACTACCGTGGCGCTGTTGGGGCTCTCCTTGTTTAC 360
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      GACATCACAAAGAGGCAGAGCTTCGACAATGTCCACAGGTGGCTTCGTGAGCTCCGCGAC 395
consensus_14697#1      GACATCACAAAGAGG--------------------------------------------- 375
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      CATGCCGACTCGAGCATTGTTATCATGATGGTCGGTAATAAGTCTGATTTGATTCATCTA 455
consensus_14697#1      ------------------------------------------------------------
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      AGGGCTGTCTCCGAGGATGAAGGTAAGGCATTGGCTGAAAAGGAGGGGCTGTTTTTTCTT 515
consensus_14697#1      ------------------------------------------------------------
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      GAGACATCAGCTATGGAGGCCGTGAATGTGGAGGAAGCCTTTCAGACTATCATCACAGAG 575
consensus_14697#1      ------------------------------------------------------------
consensus_14697#2      ------------------------------------------------------------
                                                                                   

consensus_14697#0      GTCTATGGCATTGTTAACAGGAAAGCACTGGCCGCCAAAGAAGCAGCTGCTGCTTCTGCT 635
consensus_14697#1      ------------------------------------------------------------
consensus_14697#2      -----------GCGGTGCCGCGGTGTTCGGCGCTAGCGGGGGTATAGAGGAACCGCTAGG 49
                                                                                   

consensus_14697#0      CCGCTGCCTTCCCAGGGTAAAACTATCAGCATTGACAGCGCTGCAGGAAACACAAAGAGG 695
consensus_14697#1      ------------------------------------------------------------
consensus_14697#2      TCGAGGCGATGTTGTGGGACAGCAGGCTGCACGGA-ATANCANCCATAGGAGGGCCACTG 108
                                                                                   

consensus_14697#0      GCATGCTGCTCTGCTTGA-TATGTAC--AATGGAG-CGTTCAAC-----ATCATAT-TGT 745
consensus_14697#1      GCATGCTGCTCTGCTTGA-TATGTAC--AATGGAG-CGTTCAAC-----ATCATAT-TGT 425
consensus_14697#2      GCCTGTCTCCTGCCTTGAGTATGTACCCACTGGAGTCGTTCAACCACTCACTATTTGTAT 168
                       ** **   *    ***** *******  * ***** ********     *  ** * * *

consensus_14697#0      AGAGAGCCA-GGTGTGA-GATTCGC-GGGTA-GACTCGGAGCATAGTGATCTTAAATGGT 801
consensus_14697#1      AGAGAGCCA-GGTGTGA-GATTCGC-GGGTA-GACTCGGAGCATAGTGATCTTAAATGGT 481
consensus_14697#2      GATGAGCCACGGTGTGATGATTCGCCGGGTATGACTCGGAGCATAGTGATCTTAAATGGT 228
                          ****** ******* ******* ***** ****************************

consensus_14697#0      TTGGAGGCAAGTCCTACTTTTTT---TTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAG 858
consensus_14697#1      TTGGAGGCAAGTCCTACTTTTTT---TTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAG 538
consensus_14697#2      TTGGAGGCAAGTCCTACTCTNTTGTTTTTTTCAGTTGCGTGAACATTCCAGAGTGCCTAG 288
                       ****************** * **   **********************************

consensus_14697#0      CTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTC 918
consensus_14697#1      CTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCAAAAGTTAGATGTGTGTATTAGGATTC 598
consensus_14697#2      CTGCAGTTGCAGTTTGTTCAGTGTTTCCTAATCCAAAGTTAGATGTGTGTATTAGGATTC 348
                       ********************************* **************************

consensus_14697#0      ATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGATTATA 978
consensus_14697#1      ATTCCATTTCCGTTCTGATTATACAACGCAAACTATAGCTGCAATATATCTCAGAT---- 654
consensus_14697#2      ATTCCATTTCCGTTCTGATTATACA-CGCAA-CTATAGCTGCAATATATCTCAGATTATA 406
                       ************************* ***** ************************    

consensus_14697#0      CAATTCAAACAATATGTGAGCTGCCAAAAAAAAAAAAAAAAAAAAAA 1025
consensus_14697#1      -----------------------------------------------
consensus_14697#2      CAATTCAAAAAAAAAA------------------------------- 422
                                                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)