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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 2203 fasta sequence
[TCGGTCAAATCCTCTTCTCGTCGGCTCCGGCGTGCATGCCAGCGGCGGCGGCGGCGGCGAGAAACGCTGGCGAGGAGGCAGCGGCGAGCGCTTAGATGCTAGCGAACCAGCGAAGAGGGCACTGCAGCAGTGGCGGATAGGCGGAGGCTAGAAGGGAGCAGTACGGCCAGAGAGCTAGGGTTTGGGTAATTTGGCGAGCGAGGAGCGAGGGGAGGCGAAGGGAGAAGAGGGGGGGGGGGGGGGGAGGAGAAAGAGCGGGGGAGGGATGAGCATAGTGCCCAAAGAGACGATTGAGGTGATCGGGCAGAGCGTCGGCATCGCCAACCTCCCAGCCGATGTCTCCGCCGCGCTCGCCCCCGACGTGGAGTACCGCCTCCGCGAGATCATGCAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCAGCCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGGTTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAACCCGGGTGACAAGGACGTTGGTCCAGGGATTTCTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCAAGGGATATCTGCATTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGACATACATGCAGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT-CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT-AGGCTGGT-CTTGT-GGAATTCTTGAAACTG-AAATTGACGTCTA-GGAATCTTGTAGTGATCTCTGATGCTAGA-TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC-GCCATTTTATGGCATATGTACATTTTTGAACCTTACTGATTAAGCAGAGTTGTCGTTGACATGTGCTAAAAAAAAAAAA]
[+] EMBL AK120931 [TCGGTCAAATCCTCTTCTCGTCGGCTCCGGCGTGCATGCCAGCGGCGGCGGCGGCGGCGAGAAACGCTGGCGAGGAGGCAGCGGCGAGCGCTTAGATGCTAGCGAACCAGCGAAGAGGGCACTGCAGCAGTGGCGGATAGGCGGAGGCTAGAAGGGAGCAGTACGGCCAGAGAGCTAGGGTTTGGGTAATTTGGCGAGCGAGGAGCGAGGGGAGGCGAAGGGAGAAGAGGGGGGGGGGGGGGGGAGGAGAAAGAGCGGGGGAGGGATGAGCATAGTGCCCAAAGAGACGATTGAGGTGATCGGGCAGAGCGTCGGCATCGCCAACCTCCCAGCCGATGTCTCCGCCGCGCTCGCCCCCGACGTGGAGTACCGCCTCCGCGAGATCATGCAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCAGCCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGGTTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAACCCGGGTGACAAGGACGTTGGTCCAGGGATTTCTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCAAGGGATATCTGCATTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGACATACATGCAGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTC ]
[+] EMBL CB677763 [ gcccttTGCCCAAAGAGACGATTGAGGTGATCGGGCAGAGCGTCGGCATCGCCAACCTCCCCGCCGATGTCTCCGCCGCGCTCGCCCCCGACGTGGAGTACCGCCTCCGCGAGATCATGCAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCAGCCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCA ]
[+] EMBL AU164838 [ ACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGGTTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAA ]
[+] EMBL C27079 [ ntntnGCNAAAAGGCTTGGGCATAGGCTTTCANACAACCATTGGNAGCTTAGAGACTTCTCTNCTAATTTGGTTGGTTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAACCCGGGTGACAAGGACGTTGGTCCAGGGATTNNTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCANGGGATATCTNCATTGGGGCCCAGTGCAATTAGGCTTCTCCTTTNCNCCAACCTCGAGACATACATGCNGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAANTGAGATG ]
[+] EMBL OSR21831A [ TGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCAAGGGATATCTGCATTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGACATACATGCAGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAAT ]
[+] EMBL CA766146 [ TTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGACATACATGCAGCTTTTAGAGCCGGAATTACACCTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGNAATAAGAGAGTCGCGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGGTCAGAGCTATGTAATATGCATTGTACCATTAAGCCTGGTNCTTGTGGGAGTTCTTGAAACTGAAAATTGACGTCTAGGGAATCTTGTAGTGATCTCTGATGCTAGATTTTAATCGCTTG ]
[-] EMBL CB619726 [ CTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTAAAGGTGC GCCATTTTATGGCATATGT ]
[-] EMBL CB677764 [ GAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAGAAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACAATGGTGACCCTTACTGATTAAGCAGAGTTGTCGTTG ]
[+] EMBL CB097138 [ AAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACATTTTTGAACCTTACTGATTAAGCAGAGTTGTCGTTGAC ]
[-] EMBL CA763110 [ aatTCGTGACTAACAACCCAATTAAACGGAAGTCTAGTCCAAATCTCTCCCCATCCCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTTTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCTGGGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACATTTTTGAACCTTACTGATTAAGCAGAGTTGTCGTTGACATGTGCTAAAAAAAAAAAA]
[+] EMBL BI810115 [ GCGATGAATTCTATGACTTCAGCTCCCATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAACTTCATCCTCT GGCAATTGGTGGAAAGCACCGCATCAGGTGTGATTCGGAGGGATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCCAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAA CCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGC AATGCATAGTGTTCAGAGCTATGTAATATGC TTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAAC TTTTATTAaaaaa ]
[+] EMBL AU184405 [ ATCAGGGAAGCAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCAT CTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGCGGCCATTTTATGGCATATGTACATTTTTGAACCTTAaaaaaaaa ]
[+] EMBL AU031414 [ CTGAGGCTAGCCTGGAAGGAGGACCAAAATGCTGGGCATCCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCNCCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTACCATT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACATTTTTGAAaaaa ]
[+] EMBL AU055939 [ cAGTGTTCAGAGCTATGTAATANGCATTGTNCCGNT AGGCTGGT CTTGT GGAATTCTTGAAACTG AAATTGACGTCTA GGAATCTTGTAGTGATCTCTGATGCTAGA TTTAATCGCTTGGTGACTTGCTGCTGCAATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACATTTTATTACGCTCTACTGGTGC GCCATTTTATGGCATATGTACATTTTTGAACCTTAaaaa ]
consensusID : consensus_14700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[TCATACCTATGCAATATATTGGACGGAAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCATTCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATTGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTT]
[+] EMBL CB619725 [TCATACCTATGCAATATATTGGACGGAAGGAGGCCATCAAGTGTATGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCATTCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATTGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCTTGGGCATAGGCTTT]
consensusID : consensus_14700#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[CGGAGGGATCAGGGAACAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAATGCTGGCCATCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTTGTTAGGAAAGCCAAAAATGGCAATTAAGTGTTTTCCAAGGAAGCCTTATTGTTAAATATGCCACTTTGGGTTAACCCACTTAGGCTGGTCTTGTGGAATTCTTGAAACTGAAATTGACGTCTAGGAATCTTGTAGTGATCTCTGATGCTAGATTTAATCGCTTGGTGACTTGCTGCTCATATTTTATGTGCTGATTTCTTGAATTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACTTTTATTACGCTCTACTGGTGCCCTTTTATGGCATATGTACATTTTTGAAAAAAAAA]
[+] EMBL BI810808 [CGGAGGGATCAGGGAACAACCACACGCAAAGAGTTTCCACAGTGCTGAGGCTAGCCTGGAAGGAGGACCAAATGCTGGCCATCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTTGTTAGGAAAGCCAAAAATGGCAATTAAGTGTTTTCCAAGGAAGCCTTATTGTTAAATATGCCACTTTGGGTTAACCCACTTAGGCTGGTCTTGTGGAATTCTTGAAACTGAAATTGACGTCTAGGAATCTTGTAGTGATCTCTGATGCTAGATTTAATCGCTTGGTGACTTGCTGCTCATATTTTATGTGCTGATTTCTTGAATTTTATGTTTATTGTAGTAATTTTATCTAATGTAAACTTTTATTACGCTCTACTGGTGCCCTTTTATGGCATATGTACATTTTTGAAAAAAAAA]
consensusID : consensus_14700#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[CAGAGNTCACTACAGGNTCCCTAGACGTCAATTTCAGTTTCNAGAATTCCCCNAGGCCNGCCTTANTGGTACAATGCATATTACATAGCTCTGAACACTATGCATTTGCTTCCTACAAAATGCTGGGCATCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTNCCCCAAGACC]
[-] EMBL AU055938 [CAGAGNTCACTACAGGNTCCCTAGACGTCAATTTCAGTTTCNAGAATTCCCCNAGGCCNGCCTTANTGGTACAATGCATATTACATAGCTCTGAACACTATGCATTTGCTTCCTACAAAATGCTGGGCATCTGTTGAGTTCATTGTACGAGGTATTCGGTGAAGCCATCTTCTCCTTTGTTCAACCACCAGAGATATCGTTCTTTTTGTAGGAAGCAAATGCATAGTGTTCAGAGCTATGTAATATGCATTGTNCCCCAAGACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TCGGTCAAATCCTCTTCTCGTCGGCTCCGGCGTGCATGCCAGCGGCGGCGGCGGCGGCGA 60
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 GAAACGCTGGCGAGGAGGCAGCGGCGAGCGCTTAGATGCTAGCGAACCAGCGAAGAGGGC 120
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 ACTGCAGCAGTGGCGGATAGGCGGAGGCTAGAAGGGAGCAGTACGGCCAGAGAGCTAGGG 180
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TTTGGGTAATTTGGCGAGCGAGGAGCGAGGGGAGGCGAAGGGAGAAGAGGGGGGGGGGGG 240
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 GGGGAGGAGAAAGAGCGGGGGAGGGATGAGCATAGTGCCCAAAGAGACGATTGAGGTGAT 300
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 CGGGCAGAGCGTCGGCATCGCCAACCTCCCAGCCGATGTCTCCGCCGCGCTCGCCCCCGA 360
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 CGTGGAGTACCGCCTCCGCGAGATCATGCAGGAGGCCATCAAGTGTATGCGGCATGCAAA 420
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 GAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCAGGAATGTTGAGCC 480
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTGTGGGACACAAGGA 540
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTGAGGCCCCTCTACC 600
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTGGCTAGCCATTGAGGGAGTCCAGCC 660
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACAGAGAATAAAAGGAC 720
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 AGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCTGTTAAGCATGTGTT 780
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 ATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACAATGAGTAGATCTGA 840
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 AACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCAGGCCTTCATCCGTT 900
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 GGTTCCTTACTTTTCCTACTTCATCGCCGATGAGGTTACCCGGAGTTTAGGTGATCTTCC 960
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAATCCCCACATTCATAT 1020
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATGGTTGCGAAAAGGCT 1080
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TGGGCATAGGCTTTCAGACAACCATTGGGAGCTTAGAGACTTCTCTGCTAATTTGGTTGG 1140
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TTCAGTATGTCGAAGGTTTGGTCATGCGTATCACAACATCCAAACCCGGGTGACAAGGAC 1200
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 GTTGGTCCAGGGATTTCTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCA 1260
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 AGGGATATCTGCATTGGGGCCCAGTGCAATTAGGCTTCTGCTTTTGCCCAACCTCGAGAC 1320
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 ATACATGCAGCTTTTAGAGCCGGAATTACAACTTGATAAGCAGAAAAATGAGATGAAAAG 1380
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 AAAGGAAGCATGGCGTGTTTATGGTGCCCTGCTGTGTGCTGCAGGAAAATGCTTATATGA 1440
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAA 1500
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TAAGAGAGTCGTGACTAACAACCCAAATAAACGGAAGTCTAGTACAGATCTCTCCACATC 1560
consensus_14700#1 ------------------------------------------------------------
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 CCAGCCACCTCTGAAGAAGATGACAACAGATGGTGCGATGAATTCTATGACTTCAGCTCC 1620
consensus_14700#1 ---------------TCATACCTATGCAATATATTGGACGGAAGGAGGCCATCAAGTGTA 45
consensus_14700#2 ------------------------------------------------------------
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 CATGCCAGGAACCATGGATGGCTTCTCCACCCAATTACCCAACCCTAGCATGACGCAAAC 1680
consensus_14700#1 TGCGGCATGCAAAGAGGACAGTCCTGACTGCCGATGATGTTGATAGTGCTCTCAGCCTCA 105
consensus_14700#2 --------------------------------------------------CGGAGGGATC 10
consensus_14700#3 -------CAGAGNTCACTACAGGNTCCCT--AGACGTCAATTTCAGTTTCNAGAATTCCC 51
consensus_14700#0 TTCATCCTCTGGGCAATTGGTGGAAAGCA--CCGCATCAGGTGTGATT--CGGAGGGATC 1736
consensus_14700#1 GGAATGTTGAGCCTGTATATGGATTTGCTTCCGGTGACCCCTTGCGGTTTAAGAGAGCTG 165
**
consensus_14700#2 AGGGAA-CAA----CCACAC----GCAAAGAGT-TTCCACAGTGCTGAG-GCTA-GCCTG 58
consensus_14700#3 CNAGGC-CNG----CCTTANTGGTACAATGCATATTACATAGCTCTGAACACTATGCATT 106
consensus_14700#0 AGGGAAGCAA----CCACAC----GCAAAGAGT-TTCCACAGTGCTGAG-GCTA-GCCTG 1785
consensus_14700#1 TGGGACACAAGGATCTCTTCTATATTGATGACAGGGAGGTAGACTTCAAAGAGATTATTG 225
* * * * * ** * * * *
consensus_14700#2 GA--AGGAGGAC-CAAA-----TGCTGG-CCATCTGTTG-AGTTCATTGTACGAGGTATT 108
consensus_14700#3 TG--CTTCCTAC-AAAA-----TGCTGG-GCATCTGTTG-AGTTCATTGTACGAGGTATT 156
consensus_14700#0 GA--AGGAGGACCAAAA-----TGCTGG-GCATCTGTTG-AGTTCATTGTACGAGGTATT 1836
consensus_14700#1 AGGCCCCTCTACCTAAAGCTCCTCTTGATACAGCAGTTGTAGCTCACTG-GCTAGCCATT 284
** *** * ** ** * **** ** *** ** * ** ***
consensus_14700#2 CGGTGAAGCCATCTTCTCCTTT------GTTCAACCACCAGAGATATCGTTCTTTTTTGT 162
consensus_14700#3 CGGTGAAGCCATCTTCTCCTTT------GTTCAACCACCAGAGATATCGTTCTTTTTG-- 208
consensus_14700#0 CGGTGAAGCCATCTTCTCCTTT------GTTCAACCACCAGAGATATCGTTCTTTTTG-- 1888
consensus_14700#1 GAGGGAGTCCATTCTGCAATTCCAGAGAATCCTCCTGTAGATGCTATCGTAGCACCAACA 344
* ** **** * ** * * * * ******
consensus_14700#2 TAGGAAAGCCAAAAATGGCAATTAAGTGTTTTCCAAGGAAGCCTTATTGTTAAATATGCC 222
consensus_14700#3 TAGGAAGCAAATGCATAGTG-TTCAGAGCTATGTAAT-ATGCATTGTNCCCCAAGACC-- 264
consensus_14700#0 TAGGAAGCAAATGCATAGTG-TTCAGAGCTATGTAAT-ATGCATTGTACCATTAGGC--- 1943
consensus_14700#1 GAGAATAAAAGGACAGAGCATGGGAAAGATGATGGACTTCCTGTTGACATCAAGCTTCCT 404
** * * * * * * * **
consensus_14700#2 ACTTTGGGTTAACCCACTTAGGCTGGTCTTGTGGAATTCTTGAAACTGAAATTGACGTCT 282
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 -----------------------TGGTCTTGTGGAATTCTTGAAACTGAAATTGACGTCT 1980
consensus_14700#1 GTTAAGCATGTGTTATCTAGAGAACTCCAGATGTATTTTGATAAAATAGCAGAGCTTACA 464
consensus_14700#2 AGGAATCTTGTAGTGATCTCTGATGCTAGATT--TAATCGCTTGGTGACTTGCTGCTC-- 338
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 AGGAATCTTGTAGTGATCTCTGATGCTAGATT--TAATCGCTTGGTGACTTGCTGCTGCA 2038
consensus_14700#1 ATGAGTAGATCTGAAACCTCAGTTTTTAGAGAAGCATTAGTGAGCTTATCAAGAGACTCA 524
consensus_14700#2 ATATTTTATGTGCTGATTTCTTGAA-TTTTATGTTTATTGTAG-TAATTTTATCTAATGT 396
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 ATATTTTATGTGCTGATTTCTTGAAGTTTTATGTTTATTGTAG-TAATTTTATCTAATGT 2097
consensus_14700#1 GGCCTTCATCCGTTGGTTCCTTACTTTTCCTACTTCATTGCCGATGAGGTTACCCGGAGT 584
consensus_14700#2 AAAC-TTTTATTAC-GCTCTACTGGTGCCC--TTTTATGGCATATGTACATTTTTGAAAA 452
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 AAACATTTTATTAC-GCTCTACTGGTGCGCCATTTTATGGCATATGTACATTTTTGAACC 2156
consensus_14700#1 TTAGGTGATCTTCCTGTTTTATTTGCTCTCATGCGTGTAGTCCAAAGCCTCCTACACAAT 644
consensus_14700#2 AAAAA------------------------------------------------------- 457
consensus_14700#3 ------------------------------------------------------------
consensus_14700#0 TTACTGATTAAGCAGAGTTGTCGTTGACATGTGCTAAAAAAAAAAAA------------- 2203
consensus_14700#1 CCCCACATTCATATTGAACCATATTTGCATCAGTTGATGCCGTCAATTATCACCTGCATG 704
consensus_14700#2 ----------------------------
consensus_14700#3 ----------------------------
consensus_14700#0 ----------------------------
consensus_14700#1 GTTGCGAAAAGGCTTGGGCATAGGCTTT 732
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||