These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [GGCGGCGGCGGCGATCGTCGGAGAGAAAACCGGTGGCTTTCTCGTTCTTGATTTTCTTTTTCTCTCAATTTCTCTCCTTTTCTTCTCCTCCTCCTCCTCCTCCCAATTTTGGAGTCAAAAATTGTGAGAAATCATATCTGTCCCCATCTGTAAATGTCAACTCTTCCATGCATGATTCCCCGCAAAAA] [+] EMBL AU222801 [GGCGGCGGCGGCGATCGTCGGAGAGAAAACCGGTGGCTTTCTCGTTCTTGATTTTCTTTTTCTCTCAATTTCTCTCCTTTTCTTCTCCTCCTCCTCCTCCTCCCAATTTTGGAGTCAAAAATTGTGAGAAATCATATCTGTCCCCATCTGTAAATGTCAACTCTTCCATGCATGATTCCCCGCAAAAA] consensusID : consensus_1471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 187 fasta sequence [GGCGNNGGNGNGGATCNTCGGAGAGAAAACCGATGGCTTTCTCGGTCTTNGTTTNCTTATTCTCNCAATTTCTGTCCTTTTCNTCTCCTCCTCCTCCNGCTGCCAATTTTGGNGTCAAAAATTGTGAGAAATCATATCTGTCCCNATCTGTAAATGTCAACTCTTCCATGCATNATTCCCNGTAANA] [+] EMBL OSS1052A [GGCGNNGGNGNGGATCNTCGGAGAGAAAACCGATGGCTTTCTCGGTCTTNGTTTNCTTATTCTCNCAATTTCTGTCCTTTTCNTCTCCTCCTCCTCCNGCTGCCAATTTTGGNGTCAAAAATTGTGAGAAATCATATCTGTCCCNATCTGTAAATGTCAACTCTTCCATGCATNATTCCCNGTAANA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1471#0 GGCGGCGGCGGCGATCGTCGGAGAGAAAACCGGTGGCTTTCTCGTTCTTGATTTTCTTTT 60 consensus_1471#1 GGCGNNGGNGNGGATCNTCGGAGAGAAAACCGATGGCTTTCTCGGTCTTNGTTTNCTTAT 60 **** ** * **** *************** *********** **** *** *** * consensus_1471#0 TCTCTCAATTTCTCTCCTTTTCTTCTCCTCCTCCTCCTCCTCCCAATTTTGGAGTCAAAA 120 consensus_1471#1 TCTCNCAATTTCTGTCCTTTTCNTCTCCTCCTCCTCCNGCTGCCAATTTTGGNGTCAAAA 120 **** ******** ******** ************** ** ********** ******* consensus_1471#0 ATTGTGAGAAATCATATCTGTCCCCATCTGTAAATGTCAACTCTTCCATGCATGATTCCC 180 consensus_1471#1 ATTGTGAGAAATCATATCTGTCCCNATCTGTAAATGTCAACTCTTCCATGCATNATTCCC 180 ************************ **************************** ****** consensus_1471#0 CGCAAAAA 188 consensus_1471#1 NGTAANA- 187 * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||