These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1538 fasta sequence [TGAAGGAGTAGAAAGGTGGACTGGTGGCTGCAGCTGTTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATGATATGATATTAAATTTATGGGTATTGGCTCTGTTGGGGAGCCTTGGCTGCAGCAGCCGCAGCCGCAGCCGCAACCAGAGCTGGATTATTGTTGACGTTGACGAGGCAGGTGATAGCCTTAGCTATGATGGCGATCTGGATGGTGTCGGCGGTGAGCTGGGCCAGCGGCTGCTGCAGCGGGACGCCGATCTTGGCGAAGGCGGCGTTGCACTTCTGCGTCAGGGACAGGGCCTCGTCCAGCTTCTTCTCCCCGACGTCGTAGGCGCGATTGTTGATCACGTCGTGCGCGCTGGCAAAGGCGAAGCCCACGCCCCGGTACTGCTTCGCGCACTCCGCCAGCGCTGGCTTGATGCCCGCCGTGCTTGCCCCGGCCTCTAGCTCCTTTATGTCATCGGCGGCGAGGTCCGCCTTGTCCACGCCCACCAGGGTTGCCGCCTTCGCAAGCCCCCACGCGTCCGCGTCGCGGTGGTGCCCCAGCTGCGACAGGCACATCGCCAAGTGGACGCGCTTGTCGCTGGCGGCCGCGTCACTGCAGGTGCTCTCCACCGTCGCGTCCACGCCCATAGCGGCCGCGCTCAGGCTCACGGAGATGGCCACCACGGCGGCGAGGGCCTTGCTCATTCTCATTCTTGCTCTCCTCCTTTTTCTTTCTATCT] [+] EMBL CF339882 [TGAAGGAGTAGAAAGGTGGACTGGTGGCTGCAGCTGTTCCT ATCGCCATTCC ATCCAATCC ATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGTTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGA ] [+] EMBL AK072547 [ ACTGGTGGCTGCAGCTGTTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATG ] [+] EMBL AK104982 [ GTGGCTGCAGCTGTTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATG ] [+] EMBL BF430833 [ CAGCTGTTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACCAGGT ] [+] EMBL CF326289 [ TTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGC ] [+] EMBL AA754405 [ cgagCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTSCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGYCTSCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTRCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGYGGTTGACGGCGCCCCGG ] [+] EMBL CB682554 [ CGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGT ] [+] EMBL CF325763 [ gGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCATTGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCAT ] [+] EMBL BF430485 [ TGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTA ] [+] EMBL BE228793 [ gagcACGTCGACA CCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGAC CCCGCCGCCTCCTCCACAANGTGGTTGGCTGGCGCCTCCTCGACNACGCCGAC GCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAA CCTGCGGCCACAAACTCNTCNCCAGGATCNACGCCGCGGTTGACNGCGCCCCGGCCACCGTCTTCTTCGA GCCCCCAACCAGGTCNGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATANACAAGGTCAAGACGGTCGACCTTATCCCCAACAANA AATCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCNNTCNATTAGTNTTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAnt ] [-] EMBL CB682555 [ ACACCCTCCACAACATCCTCATCCCCACGCTGTCCGTGCTATCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTTGACGCTGCGGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCCCCTCCTCGACGACGCCGTCGGCATGTGTCTGCAGTGCGTCTGGAAGCTCAGGGAGGAAGCCTGCGCCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTTACGGCGCCCCGCCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCTCCGTCAATAATTTCATTGTCGCGCCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGCCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCACCCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTAAGAAATATTTAGTAGTCT ] [+] EMBL BI795761 [ GTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCA GGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTAaaaaa ] [-] EMBL AK107110 [ GTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATGATATGATATTAAATTTATGGGTATTGGCTCTGTTGGGGAGCCTTGGCTGCAGCAGCCGCAGCCGCAGCCGCAACCAGAGCTGGATTATTGTTGACGTTGACGAGGCAGGTGATAGCCTTAGCTATGATGGCGATCTGGATGGTGTCGGCGGTGAGCTGGGCCAGCGGCTGCTGCAGCGGGACGCCGATCTTGGCGAAGGCGGCGTTGCACTTCTGCGTCAGGGACAGGGCCTCGTCCAGCTTCTTCTCCCCGACGTCGTAGGCGCGATTGTTGATCACGTCGTGCGCGCTGGCAAAGGCGAAGCCCACGCCCCGGTACTGCTTCGCGCACTCCGCCAGCGCTGGCTTGATGCCCGCCGTGCTTGCCCCGGCCTCTAGCTCCTTTATGTCATCGGCGGCGAGGTCCGCCTTGTCCACGCCCACCAGGGTTGCCGCCTTCGCAAGCCCCCACGCGTCCGCGTCGCGGTGGTGCCCCAGCTGCGACAGGCACATCGCCAAGTGGACGCGCTTGTCGCTGGCGGCCGCGTCACTGCAGGTGCTCTCCACCGTCGCGTCCACGCCCATAGCGGCCGCGCTCAGGCTCACGGAGATGGCCACCACGGCGGCGAGGGCCTTGCTCATTCTCATTCTTGCTCTCCTCCTTTTTCTTTCTATC ] [-] EMBL AK120771 [ AATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATGATATGATATTAAATTTATGGGTATTGGCTCTGTTGGGGAGCCTTGGCTGCAGCAGCCGCAGCCGCAGCCGCAACCAGAGCTGGATTATTGTTGACGTTGACGAGGCAGGTGATAGCCTTAGCTATGATGGCGATCTGGATGGTGTCGGCGGTGAGCTGGGCCAGCGGCTGCTGCAGCGGGACGCCGATCTTGGCGAAGGCGGCGTTGCACTTCTGCGTCAGGGACAGGGCCTCGTCCAGCTTCTTCTCCCCGACGTCGTAGGCGCGATTGTTGATCACGTCGTGCGCGCTGGCAAAGGCGAAGCCCACGCCCCGGTACTGCTTCGCGCACTCCGCCAGCGCTGGCTTGATGCCCGCCGTGCTTGCCCCGGCCTCTAGCTCCTTTATGTCATCGGCGGCGAGGTCCGCCTTGTCCACGCCCACCAGGGTTGCCGCCTTCGCAAGCCCCCACGCGTCCGCGTCGCGGTGGTGCCCCAGCTGCGACAGGCACATCGCCAAGTGGACGCGCTTGTCGCTGGCGGCCGCGTCACTGCAGGTGCTCTCCACCGTCGCGTCCACGCCCATAGCGGCCGCGCTCAGGCTCACGGAGATGGCCACCACGGCGGCGAGGGCCTTGCTCATTCTCATTCTTGCTCTCCTCCTTTTTCTTTCTATCT] consensusID : consensus_14711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [GCAGTGTTCCTCATCGCCNTTCCAATCCAATCCAATGGCCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGNGGGTTCCTCTGCCGCCGCCTCATCNGCTCGCCGTGCGGAGGAAGCAAAAAAACGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGANGANATCGAAANCAACTTCNGCGAAANGGTGCTGGGCAACNTCCACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGANCCTAACCCCGCGCCCGTCGACNCTGCCGACGCCCGCCGCCTCCTCCACAAAGTGGTTGGNTGGCGCCTCCTCCACAAACCCACGGNATGCTTCTGCANTGCGTCTGGAAAGTCNGGGACAAACCTGCGGCACNAACTCNTCCCCCNNGATCAACNCCCGGTTGAANGGGCCCCCGGNCACCGTCNTCTTCCAAGGCCCCNACCCANNTTTAGGGGGCGAACTTGCCNAANNCCCTTCCNGCCGGGGGGNCNTCCCCCGNTCCAATTGAAANTTCCNTCCNTNCCCNGGGGTCCCCATTTNAAACAAAGGGTCTNANAAAAGGGTCCNAAACTTTANTNCCCCCNANNAAAAAAAAAAAATTTTTGGGGGCCNGGAAAT] [+] EMBL BE229843 [GCAGTGTTCCTCATCGCCNTTCCAATCCAATCCAATGGCCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGNGGGTTCCTCTGCCGCCGCCTCATCNGCTCGCCGTGCGGAGGAAGCAAAAAAACGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGANGANATCGAAANCAACTTCNGCGAAANGGTGCTGGGCAACNTCCACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGANCCTAACCCCGCGCCCGTCGACNCTGCCGACGCCCGCCGCCTCCTCCACAAAGTGGTTGGNTGGCGCCTCCTCCACAAACCCACGGNATGCTTCTGCANTGCGTCTGGAAAGTCNGGGACAAACCTGCGGCACNAACTCNTCCCCCNNGATCAACNCCCGGTTGAANGGGCCCCCGGNCACCGTCNTCTTCCAAGGCCCCNACCCANNTTTAGGGGGCGAACTTGCCNAANNCCCTTCCNGCCGGGGGGNCNTCCCCCGNTCCAATTGAAANTTCCNTCCNTNCCCNGGGGTCCCCATTTNAAACAAAGGGTCTNANAAAAGGGTCCNAAACTTTANTNCCCCCNANNAAAAAAAAAAAATTTTTGGGGGCCNGGAAAT] consensusID : consensus_14711#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence [GCCATGGCGCTCANATCCACATCCTCGCGCCGGCNGCCGCNGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGATCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGANAGCAACTTCTGCGAGAGGGTGCTGGGCAACATCTACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAANGTGGTTGGCTGGCGCCTCCTCNACAACACCCACNGCNTGCNTCTGCANTGCGTCTGGAANGTCGGGGACNAACCTGCGGCCNCNAACTCNTCNCCAGGATCAACNCCNCGGTTGAANGGGCCCCGGCCACCNTCNTCTT] [+] EMBL BE228893 [GCCATGGCGCTCANATCCACATCCTCGCGCCGGCNGCCGCNGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGATCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGANAGCAACTTCTGCGAGAGGGTGCTGGGCAACATCTACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAANGTGGTTGGCTGGCGCCTCCTCNACAACACCCACNGCNTGCNTCTGCANTGCGTCTGGAANGTCGGGGACNAACCTGCGGCCNCNAACTCNTCNCCAGGATCAACNCCNCGGTTGAANGGGCCCCGGCCACCNTCNTCTT] consensusID : consensus_14711#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [GCTTCGGACGGGCGGGTCCTCTGCCGCCGNCTCATCAGCTCGCCGTGCGGAGGAACAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAAGAAGATCNANAACNACTTCNGCCAAAANGGTGCTGGGCAACCTCCACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCNTCNGCGCGCCTCCCCCTCGNAGCCTAACCCCNTCNCCCGTCNACACTGCCGACGCCCCGCCCGCCTCCTCCACAAAGGTGGTTNGCTGGCGCCTCCTCCGACCNANACCNACGGGNATGNCNTTCNGCACTTGCCTTNTNGAAANGTCCNGGGANCAAAACCNGCCGGNCACCNACTNCTTNCCCCAGGATCTNCG] [+] EMBL BE228757 [GCTTCGGACGGGCGGGTCCTCTGCCGCCGNCTCATCAGCTCGCCGTGCGGAGGAACAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAAGAAGATCNANAACNACTTCNGCCAAAANGGTGCTGGGCAACCTCCACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCNTCNGCGCGCCTCCCCCTCGNAGCCTAACCCCNTCNCCCGTCNACACTGCCGACGCCCCGCCCGCCTCCTCCACAAAGGTGGTTNGCTGGCGCCTCCTCCGACCNANACCNACGGGNATGNCNTTCNGCACTTGCCTTNTNGAAANGTCCNGGGANCAAAACCNGCCGGNCACCNACTNCTTNCCCCAGGATCTNCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14711#0 TGAAGGAGTAGAAAGGTGGACTGGTGGCTGCAGCTGTTCCTCATCGCCATTCCAATCCAA 60 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 -----------------------------GCAG-TGTTCCTCATCGCCNTTCCAATCCAA 30 consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 TCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGG 120 consensus_14711#2 -GCCATGGCGCTCAN-ATCCACATCCTCGCGCCGGCNGCCGCNGCAGCCTGCTGCTTCGG 58 consensus_14711#1 TCCAATGGC-CTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGG 89 consensus_14711#3 -----------------------------------------------------GCTTCGG 7 ******* consensus_14711#0 ACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGT 180 consensus_14711#2 ACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGATCGT 118 consensus_14711#1 ACGGNGGGTTCCTCTGCCGCCGCCTCATCNGCTCGCCGTGCGGAGGAAGCAAAAAAACGT 149 consensus_14711#3 ACGGGCGGGTCCTCTGCCGCCGNCTCATCAGCTCGCCGTGCGGAGGAA-CAAAAGAGCGT 66 **** ** ************* ****** ****************** ***** * *** consensus_14711#0 GGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGA 240 consensus_14711#2 GGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGA 178 consensus_14711#1 GGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGANGA 209 consensus_14711#3 GGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAAGA 126 ********************************************************* ** consensus_14711#0 -GATCGAGAGCAACTTCGGC-GAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATC 298 consensus_14711#2 -GATCGANAGCAACTTCTGC-GAGAGGGTGCTGGGCAACATCTACACCCTCCACAACATC 236 consensus_14711#1 -NATCGAAANCAACTTCNGC-GAAANGGTGCTGGGCAACNTCCACACCCTCCACAACATC 267 consensus_14711#3 AGATCNANAACNACTTCNGCCAAAANGGTGCTGGGCAACCTCCACACCCTCCACAACATC 186 *** * * * ***** ** * * ************* ** ***************** consensus_14711#0 CTCATCCCCACGCTCTCCGTGCTCTCCATCG-CGCGCCTCCCCCTCGA-GCCTAACCCCG 356 consensus_14711#2 CTCATCCCCACGCTCTCCGTGCTCTCCATCG-CGCGCCTCCCCCTCGA-GCCTAACCCCG 294 consensus_14711#1 CTCATCCCCACGCTCTCCGTGCTCTCCATCG-CGCGCCTCCCCCTCGA-NCCTAACCCCG 325 consensus_14711#3 CTCATCCCCACGCTCTCCGTGCTCTCCNTCNGCGCGCCTCCCCCTCGNAGCCTAACCCCN 246 *************************** ** *************** ********* consensus_14711#0 -CGCCCGTCGACGCTGCCGACGCCCG--CCGCCTCCTCCACAA-GGTGGTTGGCTGGCGC 412 consensus_14711#2 -CGCCCGTCGACGCTGCCGACGCCCG--CCGCCTCCTCCACAA-NGTGGTTGGCTGGCGC 350 consensus_14711#1 -CGCCCGTCGACNCTGCCGACGCCCG--CCGCCTCCTCCACAA-AGTGGTTGGNTGGCGC 381 consensus_14711#3 TCNCCCGTCNACACTGCCGACGCCCCGCCCGCCTCCTCCACAAAGGTGGTTNGCTGGCGC 306 * ****** ** ************ *************** ****** * ****** consensus_14711#0 CTCCTCGA--CGACGCCGACGGCA---TGCGTCTGCAGTG--CGTCTGGAAGG---TCAG 462 consensus_14711#2 CTCCTCNA--CAACACCCACNGCN---TGCNTCTGCANTG--CGTCTGGAANG---TCGG 400 consensus_14711#1 CTCCTCCA--CAA-ACCCACGGNA---TGCTTCTGCANTG--CGTCTGGAAAG---TCNG 430 consensus_14711#3 CTCCTCCGACCNANACCNACGGGNATGNCNTTCNGCACTTGCCTTNTNGAAANGTCCNGG 366 ****** * * ** ** * ** *** * * * * *** * consensus_14711#0 GGACGAAGCCTGC-GGCCACGAGCTCGTCGCC--AGGATCAACGCCGCGGTTGACGGCGC 519 consensus_14711#2 GGACNAA-CCTGC-GGCCNCNAACTCNTCNCC--AGGATCAACNCCNCGGTTGAANGGGC 456 consensus_14711#1 GGACAAA-CCTGC-GGC-ACNAACTCNTCCCCC-NNGATCAACNCCCGGTTGAANGGGCC 486 consensus_14711#3 GANCAAAACCNGCCGGNCACCNACTNCTTNCCCCAGGATCTNCG---------------- 410 * * ** ** ** ** * ** * ** **** * consensus_14711#0 CCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTC 579 consensus_14711#2 CCCGGCCACCNTCNTCTT------------------------------------------ 474 consensus_14711#1 CCCGGNCACCGTCNTCTTCCAAGGCCCCNACC----CANNTTTAGGGGGCGAACTTGC-C 541 consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 CGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGAC 639 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 NAANNCCCTTCCNGCCGGGGGGNCNTCCCCCGNTCCAA-TTGAAANTTCCNTCCNTNCCC 600 consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 GGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCT 699 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 NGGGGTCCCCATTTNAAACAAAGGGTCTNANAAAAGGGTCCNAAACTT--TANTNCCCCC 658 consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 TAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCT 759 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 NANNAAAAAAAAAAAATTTTTGGGGGCCNGGAAAT------------------------- 693 consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 TGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAG 819 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 TCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGG 879 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 GATGATATGATATTAAATTTATGGGTATTGGCTCTGTTGGGGAGCCTTGGCTGCAGCAGC 939 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 CGCAGCCGCAGCCGCAACCAGAGCTGGATTATTGTTGACGTTGACGAGGCAGGTGATAGC 999 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 CTTAGCTATGATGGCGATCTGGATGGTGTCGGCGGTGAGCTGGGCCAGCGGCTGCTGCAG 1059 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 CGGGACGCCGATCTTGGCGAAGGCGGCGTTGCACTTCTGCGTCAGGGACAGGGCCTCGTC 1119 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 CAGCTTCTTCTCCCCGACGTCGTAGGCGCGATTGTTGATCACGTCGTGCGCGCTGGCAAA 1179 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 GGCGAAGCCCACGCCCCGGTACTGCTTCGCGCACTCCGCCAGCGCTGGCTTGATGCCCGC 1239 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 CGTGCTTGCCCCGGCCTCTAGCTCCTTTATGTCATCGGCGGCGAGGTCCGCCTTGTCCAC 1299 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 GCCCACCAGGGTTGCCGCCTTCGCAAGCCCCCACGCGTCCGCGTCGCGGTGGTGCCCCAG 1359 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 CTGCGACAGGCACATCGCCAAGTGGACGCGCTTGTCGCTGGCGGCCGCGTCACTGCAGGT 1419 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 GCTCTCCACCGTCGCGTCCACGCCCATAGCGGCCGCGCTCAGGCTCACGGAGATGGCCAC 1479 consensus_14711#2 ------------------------------------------------------------ consensus_14711#1 ------------------------------------------------------------ consensus_14711#3 ------------------------------------------------------------ consensus_14711#0 CACGGCGGCGAGGGCCTTGCTCATTCTCATTCTTGCTCTCCTCCTTTTTCTTTCTATCT 1538 consensus_14711#2 ----------------------------------------------------------- consensus_14711#1 ----------------------------------------------------------- consensus_14711#3 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||