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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14711#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1538 fasta sequence
[TGAAGGAGTAGAAAGGTGGACTGGTGGCTGCAGCTGTTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATGATATGATATTAAATTTATGGGTATTGGCTCTGTTGGGGAGCCTTGGCTGCAGCAGCCGCAGCCGCAGCCGCAACCAGAGCTGGATTATTGTTGACGTTGACGAGGCAGGTGATAGCCTTAGCTATGATGGCGATCTGGATGGTGTCGGCGGTGAGCTGGGCCAGCGGCTGCTGCAGCGGGACGCCGATCTTGGCGAAGGCGGCGTTGCACTTCTGCGTCAGGGACAGGGCCTCGTCCAGCTTCTTCTCCCCGACGTCGTAGGCGCGATTGTTGATCACGTCGTGCGCGCTGGCAAAGGCGAAGCCCACGCCCCGGTACTGCTTCGCGCACTCCGCCAGCGCTGGCTTGATGCCCGCCGTGCTTGCCCCGGCCTCTAGCTCCTTTATGTCATCGGCGGCGAGGTCCGCCTTGTCCACGCCCACCAGGGTTGCCGCCTTCGCAAGCCCCCACGCGTCCGCGTCGCGGTGGTGCCCCAGCTGCGACAGGCACATCGCCAAGTGGACGCGCTTGTCGCTGGCGGCCGCGTCACTGCAGGTGCTCTCCACCGTCGCGTCCACGCCCATAGCGGCCGCGCTCAGGCTCACGGAGATGGCCACCACGGCGGCGAGGGCCTTGCTCATTCTCATTCTTGCTCTCCTCCTTTTTCTTTCTATCT]
[+] EMBL CF339882 [TGAAGGAGTAGAAAGGTGGACTGGTGGCTGCAGCTGTTCCT ATCGCCATTCC ATCCAATCC ATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGTTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGA ]
[+] EMBL AK072547 [ ACTGGTGGCTGCAGCTGTTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATG ]
[+] EMBL AK104982 [ GTGGCTGCAGCTGTTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATG ]
[+] EMBL BF430833 [ CAGCTGTTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACCAGGT ]
[+] EMBL CF326289 [ TTCCTCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGC ]
[+] EMBL AA754405 [ cgagCATCGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTSCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGYCTSCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTRCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGYGGTTGACGGCGCCCCGG ]
[+] EMBL CB682554 [ CGCCATTCCAATCCAATCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGT ]
[+] EMBL CF325763 [ gGCCGCAGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCATTGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCAT ]
[+] EMBL BF430485 [ TGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGAGAGCAACTTCGGCGAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTA ]
[+] EMBL BE228793 [ gagcACGTCGACA CCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGAC CCCGCCGCCTCCTCCACAANGTGGTTGGCTGGCGCCTCCTCGACNACGCCGAC GCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAA CCTGCGGCCACAAACTCNTCNCCAGGATCNACGCCGCGGTTGACNGCGCCCCGGCCACCGTCTTCTTCGA GCCCCCAACCAGGTCNGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATANACAAGGTCAAGACGGTCGACCTTATCCCCAACAANA AATCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCNNTCNATTAGTNTTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAnt ]
[-] EMBL CB682555 [ ACACCCTCCACAACATCCTCATCCCCACGCTGTCCGTGCTATCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTTGACGCTGCGGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCCCCTCCTCGACGACGCCGTCGGCATGTGTCTGCAGTGCGTCTGGAAGCTCAGGGAGGAAGCCTGCGCCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTTACGGCGCCCCGCCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCTCCGTCAATAATTTCATTGTCGCGCCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGCCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCACCCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTAAGAAATATTTAGTAGTCT ]
[+] EMBL BI795761 [ GTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAAGGTGGTTGGCTGGCGCCTCCTCGACGACGCCGACGGCATGCGTCTGCAGTGCGTCTGGAAGGTCAGGGACGAAGCCTGCGGCCACGAGCTCGTCGCCAGGATCAACGCCGCGGTTGACGGCGCCCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCA GGCCGAGCTGCAGACGCCCTCCGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGACGGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCTTAATCAATCAATCAACCAATCAATCAATTAGTAGTAaaaaa ]
[-] EMBL AK107110 [ GTAGTATCTTTTTTTTGGCTTTCAATCGCTTGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATGATATGATATTAAATTTATGGGTATTGGCTCTGTTGGGGAGCCTTGGCTGCAGCAGCCGCAGCCGCAGCCGCAACCAGAGCTGGATTATTGTTGACGTTGACGAGGCAGGTGATAGCCTTAGCTATGATGGCGATCTGGATGGTGTCGGCGGTGAGCTGGGCCAGCGGCTGCTGCAGCGGGACGCCGATCTTGGCGAAGGCGGCGTTGCACTTCTGCGTCAGGGACAGGGCCTCGTCCAGCTTCTTCTCCCCGACGTCGTAGGCGCGATTGTTGATCACGTCGTGCGCGCTGGCAAAGGCGAAGCCCACGCCCCGGTACTGCTTCGCGCACTCCGCCAGCGCTGGCTTGATGCCCGCCGTGCTTGCCCCGGCCTCTAGCTCCTTTATGTCATCGGCGGCGAGGTCCGCCTTGTCCACGCCCACCAGGGTTGCCGCCTTCGCAAGCCCCCACGCGTCCGCGTCGCGGTGGTGCCCCAGCTGCGACAGGCACATCGCCAAGTGGACGCGCTTGTCGCTGGCGGCCGCGTCACTGCAGGTGCTCTCCACCGTCGCGTCCACGCCCATAGCGGCCGCGCTCAGGCTCACGGAGATGGCCACCACGGCGGCGAGGGCCTTGCTCATTCTCATTCTTGCTCTCCTCCTTTTTCTTTCTATC ]
[-] EMBL AK120771 [ AATATTTAGTAGTCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGGGATGATATGATATTAAATTTATGGGTATTGGCTCTGTTGGGGAGCCTTGGCTGCAGCAGCCGCAGCCGCAGCCGCAACCAGAGCTGGATTATTGTTGACGTTGACGAGGCAGGTGATAGCCTTAGCTATGATGGCGATCTGGATGGTGTCGGCGGTGAGCTGGGCCAGCGGCTGCTGCAGCGGGACGCCGATCTTGGCGAAGGCGGCGTTGCACTTCTGCGTCAGGGACAGGGCCTCGTCCAGCTTCTTCTCCCCGACGTCGTAGGCGCGATTGTTGATCACGTCGTGCGCGCTGGCAAAGGCGAAGCCCACGCCCCGGTACTGCTTCGCGCACTCCGCCAGCGCTGGCTTGATGCCCGCCGTGCTTGCCCCGGCCTCTAGCTCCTTTATGTCATCGGCGGCGAGGTCCGCCTTGTCCACGCCCACCAGGGTTGCCGCCTTCGCAAGCCCCCACGCGTCCGCGTCGCGGTGGTGCCCCAGCTGCGACAGGCACATCGCCAAGTGGACGCGCTTGTCGCTGGCGGCCGCGTCACTGCAGGTGCTCTCCACCGTCGCGTCCACGCCCATAGCGGCCGCGCTCAGGCTCACGGAGATGGCCACCACGGCGGCGAGGGCCTTGCTCATTCTCATTCTTGCTCTCCTCCTTTTTCTTTCTATCT]
consensusID : consensus_14711#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[GCAGTGTTCCTCATCGCCNTTCCAATCCAATCCAATGGCCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGNGGGTTCCTCTGCCGCCGCCTCATCNGCTCGCCGTGCGGAGGAAGCAAAAAAACGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGANGANATCGAAANCAACTTCNGCGAAANGGTGCTGGGCAACNTCCACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGANCCTAACCCCGCGCCCGTCGACNCTGCCGACGCCCGCCGCCTCCTCCACAAAGTGGTTGGNTGGCGCCTCCTCCACAAACCCACGGNATGCTTCTGCANTGCGTCTGGAAAGTCNGGGACAAACCTGCGGCACNAACTCNTCCCCCNNGATCAACNCCCGGTTGAANGGGCCCCCGGNCACCGTCNTCTTCCAAGGCCCCNACCCANNTTTAGGGGGCGAACTTGCCNAANNCCCTTCCNGCCGGGGGGNCNTCCCCCGNTCCAATTGAAANTTCCNTCCNTNCCCNGGGGTCCCCATTTNAAACAAAGGGTCTNANAAAAGGGTCCNAAACTTTANTNCCCCCNANNAAAAAAAAAAAATTTTTGGGGGCCNGGAAAT]
[+] EMBL BE229843 [GCAGTGTTCCTCATCGCCNTTCCAATCCAATCCAATGGCCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGGACGGNGGGTTCCTCTGCCGCCGCCTCATCNGCTCGCCGTGCGGAGGAAGCAAAAAAACGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGANGANATCGAAANCAACTTCNGCGAAANGGTGCTGGGCAACNTCCACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGANCCTAACCCCGCGCCCGTCGACNCTGCCGACGCCCGCCGCCTCCTCCACAAAGTGGTTGGNTGGCGCCTCCTCCACAAACCCACGGNATGCTTCTGCANTGCGTCTGGAAAGTCNGGGACAAACCTGCGGCACNAACTCNTCCCCCNNGATCAACNCCCGGTTGAANGGGCCCCCGGNCACCGTCNTCTTCCAAGGCCCCNACCCANNTTTAGGGGGCGAACTTGCCNAANNCCCTTCCNGCCGGGGGGNCNTCCCCCGNTCCAATTGAAANTTCCNTCCNTNCCCNGGGGTCCCCATTTNAAACAAAGGGTCTNANAAAAGGGTCCNAAACTTTANTNCCCCCNANNAAAAAAAAAAAATTTTTGGGGGCCNGGAAAT]
consensusID : consensus_14711#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 474 fasta sequence
[GCCATGGCGCTCANATCCACATCCTCGCGCCGGCNGCCGCNGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGATCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGANAGCAACTTCTGCGAGAGGGTGCTGGGCAACATCTACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAANGTGGTTGGCTGGCGCCTCCTCNACAACACCCACNGCNTGCNTCTGCANTGCGTCTGGAANGTCGGGGACNAACCTGCGGCCNCNAACTCNTCNCCAGGATCAACNCCNCGGTTGAANGGGCCCCGGCCACCNTCNTCTT]
[+] EMBL BE228893 [GCCATGGCGCTCANATCCACATCCTCGCGCCGGCNGCCGCNGCAGCCTGCTGCTTCGGACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGATCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGAGATCGANAGCAACTTCTGCGAGAGGGTGCTGGGCAACATCTACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCATCGCGCGCCTCCCCCTCGAGCCTAACCCCGCGCCCGTCGACGCTGCCGACGCCCGCCGCCTCCTCCACAANGTGGTTGGCTGGCGCCTCCTCNACAACACCCACNGCNTGCNTCTGCANTGCGTCTGGAANGTCGGGGACNAACCTGCGGCCNCNAACTCNTCNCCAGGATCAACNCCNCGGTTGAANGGGCCCCGGCCACCNTCNTCTT]
consensusID : consensus_14711#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[GCTTCGGACGGGCGGGTCCTCTGCCGCCGNCTCATCAGCTCGCCGTGCGGAGGAACAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAAGAAGATCNANAACNACTTCNGCCAAAANGGTGCTGGGCAACCTCCACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCNTCNGCGCGCCTCCCCCTCGNAGCCTAACCCCNTCNCCCGTCNACACTGCCGACGCCCCGCCCGCCTCCTCCACAAAGGTGGTTNGCTGGCGCCTCCTCCGACCNANACCNACGGGNATGNCNTTCNGCACTTGCCTTNTNGAAANGTCCNGGGANCAAAACCNGCCGGNCACCNACTNCTTNCCCCAGGATCTNCG]
[+] EMBL BE228757 [GCTTCGGACGGGCGGGTCCTCTGCCGCCGNCTCATCAGCTCGCCGTGCGGAGGAACAAAAGAGCGTGGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAAGAAGATCNANAACNACTTCNGCCAAAANGGTGCTGGGCAACCTCCACACCCTCCACAACATCCTCATCCCCACGCTCTCCGTGCTCTCCNTCNGCGCGCCTCCCCCTCGNAGCCTAACCCCNTCNCCCGTCNACACTGCCGACGCCCCGCCCGCCTCCTCCACAAAGGTGGTTNGCTGGCGCCTCCTCCGACCNANACCNACGGGNATGNCNTTCNGCACTTGCCTTNTNGAAANGTCCNGGGANCAAAACCNGCCGGNCACCNACTNCTTNCCCCAGGATCTNCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14711#0 TGAAGGAGTAGAAAGGTGGACTGGTGGCTGCAGCTGTTCCTCATCGCCATTCCAATCCAA 60
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 -----------------------------GCAG-TGTTCCTCATCGCCNTTCCAATCCAA 30
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 TCCAATGGCGCTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGG 120
consensus_14711#2 -GCCATGGCGCTCAN-ATCCACATCCTCGCGCCGGCNGCCGCNGCAGCCTGCTGCTTCGG 58
consensus_14711#1 TCCAATGGC-CTCACCAACCACATCCTCGCGCCGGCAGCCGCAGCAGCCTGCTGCTTCGG 89
consensus_14711#3 -----------------------------------------------------GCTTCGG 7
*******
consensus_14711#0 ACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGAGCGT 180
consensus_14711#2 ACGGCGGGTTCCTCTGCCGCCGCCTCATCAGCTCGCCGTGCGGAGGAAGCAAAAGATCGT 118
consensus_14711#1 ACGGNGGGTTCCTCTGCCGCCGCCTCATCNGCTCGCCGTGCGGAGGAAGCAAAAAAACGT 149
consensus_14711#3 ACGGGCGGGTCCTCTGCCGCCGNCTCATCAGCTCGCCGTGCGGAGGAA-CAAAAGAGCGT 66
**** ** ************* ****** ****************** ***** * ***
consensus_14711#0 GGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGA 240
consensus_14711#2 GGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAGGA 178
consensus_14711#1 GGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGANGA 209
consensus_14711#3 GGTGGTGGCCATGGCCGACCTGCTGGGCGACTTTGGCGCGCGCGACCCCTTCCCGGAAGA 126
********************************************************* **
consensus_14711#0 -GATCGAGAGCAACTTCGGC-GAGAGGGTGCTGGGCAACGTCGACACCCTCCACAACATC 298
consensus_14711#2 -GATCGANAGCAACTTCTGC-GAGAGGGTGCTGGGCAACATCTACACCCTCCACAACATC 236
consensus_14711#1 -NATCGAAANCAACTTCNGC-GAAANGGTGCTGGGCAACNTCCACACCCTCCACAACATC 267
consensus_14711#3 AGATCNANAACNACTTCNGCCAAAANGGTGCTGGGCAACCTCCACACCCTCCACAACATC 186
*** * * * ***** ** * * ************* ** *****************
consensus_14711#0 CTCATCCCCACGCTCTCCGTGCTCTCCATCG-CGCGCCTCCCCCTCGA-GCCTAACCCCG 356
consensus_14711#2 CTCATCCCCACGCTCTCCGTGCTCTCCATCG-CGCGCCTCCCCCTCGA-GCCTAACCCCG 294
consensus_14711#1 CTCATCCCCACGCTCTCCGTGCTCTCCATCG-CGCGCCTCCCCCTCGA-NCCTAACCCCG 325
consensus_14711#3 CTCATCCCCACGCTCTCCGTGCTCTCCNTCNGCGCGCCTCCCCCTCGNAGCCTAACCCCN 246
*************************** ** *************** *********
consensus_14711#0 -CGCCCGTCGACGCTGCCGACGCCCG--CCGCCTCCTCCACAA-GGTGGTTGGCTGGCGC 412
consensus_14711#2 -CGCCCGTCGACGCTGCCGACGCCCG--CCGCCTCCTCCACAA-NGTGGTTGGCTGGCGC 350
consensus_14711#1 -CGCCCGTCGACNCTGCCGACGCCCG--CCGCCTCCTCCACAA-AGTGGTTGGNTGGCGC 381
consensus_14711#3 TCNCCCGTCNACACTGCCGACGCCCCGCCCGCCTCCTCCACAAAGGTGGTTNGCTGGCGC 306
* ****** ** ************ *************** ****** * ******
consensus_14711#0 CTCCTCGA--CGACGCCGACGGCA---TGCGTCTGCAGTG--CGTCTGGAAGG---TCAG 462
consensus_14711#2 CTCCTCNA--CAACACCCACNGCN---TGCNTCTGCANTG--CGTCTGGAANG---TCGG 400
consensus_14711#1 CTCCTCCA--CAA-ACCCACGGNA---TGCTTCTGCANTG--CGTCTGGAAAG---TCNG 430
consensus_14711#3 CTCCTCCGACCNANACCNACGGGNATGNCNTTCNGCACTTGCCTTNTNGAAANGTCCNGG 366
****** * * ** ** * ** *** * * * * *** *
consensus_14711#0 GGACGAAGCCTGC-GGCCACGAGCTCGTCGCC--AGGATCAACGCCGCGGTTGACGGCGC 519
consensus_14711#2 GGACNAA-CCTGC-GGCCNCNAACTCNTCNCC--AGGATCAACNCCNCGGTTGAANGGGC 456
consensus_14711#1 GGACAAA-CCTGC-GGC-ACNAACTCNTCCCCC-NNGATCAACNCCCGGTTGAANGGGCC 486
consensus_14711#3 GANCAAAACCNGCCGGNCACCNACTNCTTNCCCCAGGATCTNCG---------------- 410
* * ** ** ** ** * ** * ** **** *
consensus_14711#0 CCCGGCCACCGTCGTCTTCGAGGCCCCCAACCAGGTCAGGGCCGAGCTGCAGACGCCCTC 579
consensus_14711#2 CCCGGCCACCNTCNTCTT------------------------------------------ 474
consensus_14711#1 CCCGGNCACCGTCNTCTTCCAAGGCCCCNACC----CANNTTTAGGGGGCGAACTTGC-C 541
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 CGCCGGCGGCCTCACCGTCAATGACTTCATCGTCGCGGCTCGCATAGACAAGGTCAAGAC 639
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 NAANNCCCTTCCNGCCGGGGGGNCNTCCCCCGNTCCAA-TTGAAANTTCCNTCCNTNCCC 600
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 GGTCGACCTTATCCCCAAGAAGAGAGTCTGGGCCTGATTCTTCATTCACATATATCCCCT 699
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 NGGGGTCCCCATTTNAAACAAAGGGTCTNANAAAAGGGTCCNAAACTT--TANTNCCCCC 658
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 TAATCAATCAATCAACCAATCAATCAATTAGTAGTATCTTTTTTTTGGCTTTCAATCGCT 759
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 NANNAAAAAAAAAAAATTTTTGGGGGCCNGGAAAT------------------------- 693
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 TGTGGAGTAGTACACTACTACGGAGTAGTTGTTGTTTTGAATTTATAAAATATTTAGTAG 819
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 TCTTTCAAAGCAAAGGCACCGGCAGAATTTGTGCCCAAAACCAAAAAACAAATAAAAAGG 879
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 GATGATATGATATTAAATTTATGGGTATTGGCTCTGTTGGGGAGCCTTGGCTGCAGCAGC 939
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 CGCAGCCGCAGCCGCAACCAGAGCTGGATTATTGTTGACGTTGACGAGGCAGGTGATAGC 999
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 CTTAGCTATGATGGCGATCTGGATGGTGTCGGCGGTGAGCTGGGCCAGCGGCTGCTGCAG 1059
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 CGGGACGCCGATCTTGGCGAAGGCGGCGTTGCACTTCTGCGTCAGGGACAGGGCCTCGTC 1119
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 CAGCTTCTTCTCCCCGACGTCGTAGGCGCGATTGTTGATCACGTCGTGCGCGCTGGCAAA 1179
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 GGCGAAGCCCACGCCCCGGTACTGCTTCGCGCACTCCGCCAGCGCTGGCTTGATGCCCGC 1239
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 CGTGCTTGCCCCGGCCTCTAGCTCCTTTATGTCATCGGCGGCGAGGTCCGCCTTGTCCAC 1299
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 GCCCACCAGGGTTGCCGCCTTCGCAAGCCCCCACGCGTCCGCGTCGCGGTGGTGCCCCAG 1359
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 CTGCGACAGGCACATCGCCAAGTGGACGCGCTTGTCGCTGGCGGCCGCGTCACTGCAGGT 1419
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 GCTCTCCACCGTCGCGTCCACGCCCATAGCGGCCGCGCTCAGGCTCACGGAGATGGCCAC 1479
consensus_14711#2 ------------------------------------------------------------
consensus_14711#1 ------------------------------------------------------------
consensus_14711#3 ------------------------------------------------------------
consensus_14711#0 CACGGCGGCGAGGGCCTTGCTCATTCTCATTCTTGCTCTCCTCCTTTTTCTTTCTATCT 1538
consensus_14711#2 -----------------------------------------------------------
consensus_14711#1 -----------------------------------------------------------
consensus_14711#3 -----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||