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Oryza sativa
cluster # 14716 cluster # 14716       Sequences # 17       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14716#0 length = 773 sequences # 15  
consensus_14716#1 length = 580 sequences # 1  
consensus_14716#2 length = 280 sequences # 1  

consensusID : consensus_14716#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 773
fasta sequence
                              [CATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGT-------TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC--AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG-T-CCCCAAGAC-GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG-AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC-TGCATTACAAGGGTTC-TGCCTTCCAC-CGTATCATACCCAAC-TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT-C-AAGCTGCGCCAC-ACCGG-CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA-CGGCTCCCAATTCTTCATCTGCACCA-CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAAAAAA]

[+] EMBL CF308765             [CATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGCCTCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGG                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK103109             [   CAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGT       TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAAT                                ]
[+] EMBL CF317314             [   CAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGT       TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCT                                                                                                                                                                                                                                                  ]
[+] EMBL CF315858             [            TCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGT       TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTG                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU182962             [               GCCGCCGACGCGCCGATCTCCTCCTTCCAGT       TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCG                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU065580             [               GCCGCCGACGCGCCGATCTCCTCCTTCCAGT       TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTTGCATTACAAGGGTTC TGCTTTCCAC CGTATCATACCCAAC TTCATGTGCCANGGCGGCGAATTCANCCGCGGAAACGGCACCGGCGGGGA TTCATTTACGGCGAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU064749             [               GCCGCCGACGCGCCGATCTCCTCCTTCCAGT       TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGT TGCATTACAAGGGTTCTTGCCTTCCAC CGTATCATACCCAACTTTCATGTGCCAGGGCGGCGATTTCAACCGCGGCAACGGCAACGGCGGCGAGTtc                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSCYP1R              [                      ACGCGCCGATCTCCTCCTTCCAGT       TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCC                                                                                                                                                                                    ]
[+] EMBL CK085233             [                         CGCCGATCTCCTCCTTCCAGT       TCCAGGCTAAGCCATGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCC  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGC                                                                                                                                                                                                                                                   ]
[+] EMBL OSC141               [                                                                 CATGGCNCGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGG C  AGGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCC GNAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT CAAAGCTGCGCCACAACCGG CCCAGGCGTTCTCTTCATNGCCAACGNAGGGCCAAACANCAA CGGCTTCCAATTNTTCATCTGCAACANGGGGTACCA                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU094879             [                                                                                   CAAGGTGTTNTTCGACATCCTCATCGGAAAGGCC  AGGGCCGNCCGCGTCGTCATGGAGCTCTTCGCCGACACCG T CCCCAAGAC GGCCGAGAA TTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGC NCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTNC AAG TGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAAAAAA]
[+] EMBL AU094644             [                                                                                                    cctTCATCGGCAAGGCCCAAGGNCCGGCCGGGTCGTCATGAAGCTTTTCGCCGACACGG TCCCCCAAGACGGGCCGAGAACTTTCGCTGCCTNTGCACCGGCGAAGAAGGGCCTCGGCGCCTCCGGCAAGCCGN TGCATTACAAGGGTTC TGCCTTCCAC CGTATCATACCCAAC TTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAAAAAA]
[-] EMBL CF317313             [                                                                                                                        GGGCCGGCCGCGTCGTCATGGAGCTCTTCGCCGACACCGTT CCCCAAGAC GGCCGAGAACTTTCGCTGCCTCTGCACCGGCG AGAAGGGCCTCGGCGCCTCCGGCAAGCCGC TGCATTACAAGGGTTC TGCCTTCCACNCGTATCATACCCAAC TTCATG GCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAGCTGCGCCAC ACCGGNCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAANCGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAAaaaaa                                               ]
[+] EMBL AU091902             [                                                                                                                                                                                                                                                                                                                   CGCGGCAACGGCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTT C AAANTGCGCCAC ACCGG CCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAA CGGCTCCCAATTCTTCATCTGCACCA CGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTAAAAaaa                                                 ]
[+] EMBL AU085791             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            cngnACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTATGCTCTTAGCCCTCAATGTTAaaaaa                       ]


>consensus_14716#0 CATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGGCTAAGCCA TGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCC GCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCC TCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTG CCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACG GCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCC ACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAAT TCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGG TCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCA CGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGAT TATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGAC ATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATA ACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAAAAAA



consensusID : consensus_14716#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [CCGAGAACTTTCGCTGCCTTTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGTTGCATTACAAGGGTTTTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATTTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTTTTCATTTGCACCACGGGTACCACCTGGCTTGACGGCAAGCACGTTGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTTTGGCGGCACGGCCGAGGGGGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTTTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTTTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF315859             [CCGAGAACTTTCGCTGCCTTTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGTTGCATTACAAGGGTTTTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATTTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAATTTTTCATTTGCACCACGGGTACCACCTGGCTTGACGGCAAGCACGTTGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTTTGGCGGCACGGCCGAGGGGGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTTTTCCTTTTACAAGGAATTTTGTGACATTGTTCCGTTTTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14716#1 CCGAGAACTTTCGCTGCCTTTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGT TGCATTACAAGGGTTTTGCCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCG ACTTCACCCGCGGCAACGGCACCGGCGGCGAGTCCATTTACGGCGACAGGTTTGCCGACG AGAACTTCAAGCTGCGCCACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAA ACACCAACGGCTCCCAATTTTTCATTTGCACCACGGGTACCACCTGGCTTGACGGCAAGC ACGTTGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCG GCTCCGGCTTTGGCGGCACGGCCGAGGGGGTCCTCATCGAGGACTGCGGCCAGCTCGCCG ACGACCACGCCAACTGATTATATTAGATTACTTACTTACTAGAGTATATTTTTTTCCTTT TACAAGGAATTTTGTGACATTGTTCCGTTTTTCTTCTTGTATCAATAACAATCCAATGTT AGAAAACATTTATTTATAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_14716#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence
                              [CCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTAAAAAAAAAAAAAAAA]

[+] EMBL BE040324             [CCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTACTTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATAACTAAAAAAAAAAAAAAAA]


>consensus_14716#2 CCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGGTCGTCGACGGATACACCGTCG TCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCACGGCCGAGCGCGTCCTCATCG AGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGATTATATTAGATTACTTACTTAC TTTTACAAGGAATTTTGTGACATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAAT GTTAGAAAACATTTATTTATAACTAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14716#1      ------------------------------------------------------------
consensus_14716#2      ------------------------------------------------------------
consensus_14716#0      CATCAGATTGTTTCCGCCGCCGACGCGCCGATCTCCTCCTTCCAGTTCCAGGCTAAGCCA 60
                                                                                   

consensus_14716#1      ------------------------------------------------------------
consensus_14716#2      ------------------------------------------------------------
consensus_14716#0      TGGCGAGCAAGAACCCCAAGGTGTTCTTCGACATCCTCATCGGCAAGGCCAGGGCCGGCC 120
                                                                                   

consensus_14716#1      ------------------------------------------CCGAGAACTTTCGCTGCC 18
consensus_14716#2      ------------------------------------------------------------
consensus_14716#0      GCGTCGTCATGGAGCTCTTCGCCGACACCGTCCCCAAGACGGCCGAGAACTTTCGCTGCC 180
                                                                                   

consensus_14716#1      TTTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGTTGCATTACAAGGGTTTTG 78
consensus_14716#2      ------------------------------------------------------------
consensus_14716#0      TCTGCACCGGCGAGAAGGGCCTCGGCGCCTCCGGCAAGCCGCTGCATTACAAGGGTTCTG 240
                                                                                   

consensus_14716#1      CCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACG 138
consensus_14716#2      ------------------------------------------------------------
consensus_14716#0      CCTTCCACCGTATCATACCCAACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGCAACG 300
                                                                                   

consensus_14716#1      GCACCGGCGGCGAGTCCATTTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCC 198
consensus_14716#2      ------------------------------------------------------------
consensus_14716#0      GCACCGGCGGCGAGTCCATCTACGGCGACAGGTTTGCCGACGAGAACTTCAAGCTGCGCC 360
                                                                                   

consensus_14716#1      ACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAAT 258
consensus_14716#2      ------------------------------------------------------------
consensus_14716#0      ACACCGGCCCAGGCGTGCTCTCCATGGCCAACGCAGGGCCAAACACCAACGGCTCCCAAT 420
                                                                                   

consensus_14716#1      TTTTCATTTGCACCACGGGTACCACCTGGCTTGACGGCAAGCACGTTGTTTTCGGCAAGG 318
consensus_14716#2      ---------------------CCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGG 39
consensus_14716#0      TCTTCATCTGCACCACGCGTACCACCTGGCTCGACGGCAAGCACGTCGTTTTCGGCAAGG 480
                                            ********** ************** *************

consensus_14716#1      TCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTTTGGCGGCA 378
consensus_14716#2      TCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCA 99
consensus_14716#0      TCGTCGACGGATACACCGTCGTCGAGAAGATGGAGCAAGTCGGCTCCGGCTCTGGCGGCA 540
                       *************************************************** ********

consensus_14716#1      CGGCCGAGGGGGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGAT 438
consensus_14716#2      CGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGAT 159
consensus_14716#0      CGGCCGAGCGCGTCCTCATCGAGGACTGCGGCCAGCTCGCCGACGACCACGCCAACTGAT 600
                       ******** * *************************************************

consensus_14716#1      TATATTAGATTACTTACTTACTAGAGTATATTTTTTTCCTTTTACAAGGAATTTTGTGAC 498
consensus_14716#2      TATATTAGATTACTTACTTACT------------------TTTACAAGGAATTTTGTGAC 201
consensus_14716#0      TATATTAGATTACTTACTTACTAGAGTATATTTTCTTCCTTTTACAAGGAATTTTGTGAC 660
                       **********************                  ********************

consensus_14716#1      ATTGTTCCGTTTTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATA 558
consensus_14716#2      ATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATA 261
consensus_14716#0      ATTGTTCCGTTCTTCTTCTTGTATCAATAACAATCCAATGTTAGAAAACATTTATTTATA 720
                       *********** ************************************************

consensus_14716#1      AAAAAAAAAAAAAAAAAAAAAA------------------------------- 580
consensus_14716#2      ACTAAAAAAAAAAAAAAAA---------------------------------- 280
consensus_14716#0      ACTATGCTCTTAGCCCTCAATGTTATATAGCTATTGCCTTGCTCTGAAAAAAA 773
                       *  *       *      *                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)