These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACACATATATTAATTTCATTATTGCACGCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTGCAGACTAGGATATTATTCATGCCGCAAAGCTAGATCTTCAGGTGCAGTCGTTCAAATCGAGGTGCTTTCAGCCTGCAATCGCGGGCGGGGGGCACCTGTACGCGGGGAAGGGCACCTTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAAAGCTTCACCTCGTCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGGGCCCTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGGTTATCGATGTGTTTGCAGCCCCCCTTGTCTCGTCCTCT] [+] EMBL CA760097 [GGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACACATATATTAATTTCATTATTGCACGCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTGCAGACTAGGATATTATTCATGCCGCAAAGCTAGATCTTCAGGTGCAGTCGTTCAAATCGAGGTGCTTTCAGCCTGCAATCGCGGGCGGGGGGCACCTGTACGCGGGGAAGGGCACCTTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAAAGCTTCACCTCGTCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGGGCCCTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGGTTATCGATGTGTTTGCAGCCCCCCTTGTCTCGTCCTCT] consensusID : consensus_1472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [TGTCATTCATTACCCCCAAATATGCTATTACACATATATTAATTACATTATTGCACGCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTGCAGACTAGGATATTATTCATGCCGCATAGCTAGATCTTCAGGTGCAGTCGTTCAGATCGAGGTGCTTTCAGCCTGCAATCGCGGGCTGGGGGCACCTGTACGCGGGGAAGGGCACCTTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAGAGCTTCACCTCGTCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGCGCCCTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGGTTATCGATGTGTT] [-] EMBL AK112054 [TGTCATTCATTACCCCCAAATATGCTATTACACATATATTAATTACATTATTGCACGCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAGAGTGCAGACTAGGATATTATTCATGCCGCATAGCTAGATCTTCAGGTGCAGTCGTTCAGATCGAGGTGCTTTCAGCCTGCAATCGCGGGCTGGGGGCACCTGTACGCGGGGAAGGGCACCTTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAGAGCTTCACCTCGTCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTGTCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGCGCCCTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAACTGGTTATCGATGTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1472#0 GGCCGCTTTTTTTTTTTTTTTTTTTTTTTTTTTACACATATATTAATTTCATTATTGCAC 60 consensus_1472#1 ----TGTCATTCATTACCCCCAAATATGCTATTACACATATATTAATTACATTATTGCAC 56 * ** ** * * * ***************** *********** consensus_1472#0 GCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAG 120 consensus_1472#1 GCGTGCATAAATTTACAAATAAGCACGCTCGCGGGAGATCGATTGATCAACGTAGTACAG 116 ************************************************************ consensus_1472#0 AGTGCAGACTAGGATATTATTCATGCCGCAAAGCTAGATCTTCAGGTGCAGTCGTTCAAA 180 consensus_1472#1 AGTGCAGACTAGGATATTATTCATGCCGCATAGCTAGATCTTCAGGTGCAGTCGTTCAGA 176 ****************************** *************************** * consensus_1472#0 TCGAGGTGCTTTCAGCCTGCAATCGCGGGCGGGGGGCACCTGTACGCGGGGAAGGGCACC 240 consensus_1472#1 TCGAGGTGCTTTCAGCCTGCAATCGCGGGCTGGGGGCACCTGTACGCGGGGAAGGGCACC 236 ****************************** ***************************** consensus_1472#0 TTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAAAGCTTCACCTCG 300 consensus_1472#1 TTCCCGGTCTCGATGCGCTTGACGTCCTCCACGAGCAGGTCGTAGTAGAGCTTCACCTCG 296 *********************************************** ************ consensus_1472#0 TCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTG 360 consensus_1472#1 TCGGCGGACTTCCCCGCAACGGCGCGCGCGATGTTGTGCCACCGCTCCGGCGTGTCCCTG 356 ************************************************************ consensus_1472#0 TCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGGGCC 420 consensus_1472#1 TCGTACACCGCCAGCGCCCGCTCGAACTGCTCGTTCTGCCTCGCCGTCCACTGCGGCGCC 416 ******************************************************** *** consensus_1472#0 CTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAA 480 consensus_1472#1 CTCGACGAGCTCACCGACATCGACGCCATCGAGTCTCACACAGCAAATTCTCTTTCTGAA 476 ************************************************************ consensus_1472#0 CTGGTTATCGATGTGTTTGCAGCCCCCCTTGTCTCGTCCTCT 522 consensus_1472#1 CTGGTTATCGATGTGTT------------------------- 493 ***************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||