cluster # 14725

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Oryza sativa
cluster # 14725 cluster # 14725 Sequences # 17 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14725#0 length = 1339 sequences # 9

consensus_14725#1 length = 780 sequences # 6
consensus_14725#2 length = 483 sequences # 2

consensusID : consensus_14725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1339
fasta sequence

                              [GCAGCTTGATCAGTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTCGGTTTGATCTTAATTTGGTGACATTTTGTTCTAAGCAAAGTGTTCCTTTTTTGCGCAATTAATTGGGTTTCCGACTTATTTGCATTGTTTTGGAGTGACAAAGTTGCTTAATTTTGGTGAATGTCATCCAGGTGAGGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGGTACATTTGGTTCAAGTCAATAAAACAGTAGCACATATGATAAATTATTCTCAGTAAACAGCTCAAATTTTTATCTAAACTTCTCCCTTAAACCAGTAAGTTCTGAAGTAAAAAAAAAATACTATCAGTTATTCAGAGAAATGATCATTGAACCCTTGCCAAACTGCAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGGGCATGGCTGCATCACAAGAATCAACAATGTTGCCAAGAGGTT-CAA-CAAGTT----GAG-CGAAACCTG-CGAT-GATCTG-CGCTTG-CAATTCGCAAGCT-CGACGATCGTCTTCGTGGACATGTTCGCCATCAAGTATGATCTTGTTG-CCAACCACACGAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGG-CCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT-CCCAAAGG-AAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATTCTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK070904             [GCAGCTTGATCAGTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTCGGTTTGATCTTAATTTGGTGACATTTTGTTCTAAGCAAAGTGTTCCTTTTTTGCGCAATTAATTGGGTTTCCGACTTATTTGCATTGTTTTGGAGTGACAAAGTTGCTTAATTTTGGTGAATGTCATCCAGGTGAGGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGGTACATTTGGTTCAAGTCAATAAAACAGTAGCACATATGATAAATTATTCTCAGTAAACAGCTCAAATTTTTATCTAAACTTCTCCCTTAAACCAGTAAGTTCTGAAGTAAAAAAAAAATACTATCAGTTATTCAGAGAAATGATCATTGAACCCTTGCCAAACTGCAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGGGCATGGCTGCATCACAAGAATCAACAATGTTGCCAAGAGGTT CAA CAAGTT    GAG CGAAACCTG CGAT GATCTG CGCTTG CAATTCGCAAGCT CGACGATCGTCTTCGTGGACATGTTCGCCATCAAGTATGATCTTGTTG CCAACCACACGAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGG CCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT CCCAAAGG AAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATTCTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATA                                       ]
[+] EMBL C99683               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gGGTTCCAACCAATTTGCTGGAGCCGAAACCTGCCGATGGATCNGCCGCTTGCCAATTCGCCAGCTCCGACGATCGTCTTCGTGGAC TGTTCGCCATCAAGTATGATCTTGTTGCCCAACCACACGAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGGCCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCG ATTTTCC TTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCC AAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT CCCAAAGG AAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTNNCCCNCTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAA  AAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF308754             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGG CCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT CCCAAAGG AAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATTCTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAATCAGAACTCCAAAAAAAA             ]
[-] EMBL CF311559             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGAAGAAAAGCTGCACGG CCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT CCCAAAGG AAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATTCTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAATCAGAACTCCAAAAAAAA             ]
[+] EMBL AU096204             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT CCCAAAGG AAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATTCTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAAaaa                            ]
[+] EMBL AU173406             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT CCCAAAGG AAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATTCTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAATCAAAAAAAAA                    ]
[+] EMBL OSC9691              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT CCCAAAGG AAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATTCTTTTCTTTAATTTTGATAAAT AATAGNGNTGGATCTATAAATTTAA                                ]
[+] EMBL AU096904             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTT CCCAAAGG AAATGGTGAAGGTGAATCNCTAACAGATNTGGCCAACANAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGNACNCTTGGGGTGTGTGTGTANATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGNATAATTCTTTTCTTTAATTTTGATAAATAAATANAGATGAATCTATAAATTTAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99546               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     cAAGATTATTTTGGTTTCCCCAAAGGTAAATGGTGAAGGTGAATCACTAACAGATNTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTANACTTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTACNTATAATTCTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAA  AAANAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_14725#0
GCAGCTTGATCAGTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTCG
GTTTGATCTTAATTTGGTGACATTTTGTTCTAAGCAAAGTGTTCCTTTTTTGCGCAATTA
ATTGGGTTTCCGACTTATTTGCATTGTTTTGGAGTGACAAAGTTGCTTAATTTTGGTGAA
TGTCATCCAGGTGAGGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACC
ATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTT
CGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGGTACATTTGGTTCAA
GTCAATAAAACAGTAGCACATATGATAAATTATTCTCAGTAAACAGCTCAAATTTTTATC
TAAACTTCTCCCTTAAACCAGTAAGTTCTGAAGTAAAAAAAAAATACTATCAGTTATTCA
GAGAAATGATCATTGAACCCTTGCCAAACTGCAGACTTTGCATAAGAATGGGGCCAAGAA
GTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGG
GGAAATTGATCGTGATCTCGACGGGCATGGCTGCATCACAAGAATCAACAATGTTGCCAA
GAGGTTCAACAAGTTGAGCGAAACCTGCGATGATCTGCGCTTGCAATTCGCAAGCTCGAC
GATCGTCTTCGTGGACATGTTCGCCATCAAGTATGATCTTGTTGCCAACCACACGAAACA
CGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGA
TCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCAT
CAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGAT
AAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAA
GGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTTCCCAAAGGAAATGGTG
AAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTT
TCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACACT
TGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATTC
TTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAATCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

consensusID : consensus_14725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 780
fasta sequence

                              [GTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTGAGGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGAGCATGGCTGCATCACAAGAATCAACAATG-TTGCCAAGAGGTTCAACAAGTTGCTGAGCGAAACCTGCGATGATCTGCGCTTGC-AATTCGCAAGC-TCGACGATCGTCTTCGTGGACATGTTC-GCCATCAAGTATGATCTTGTTGCCAACCACAC-GAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTANGNNNANTTTGGTTTCNNANNNNNNNGGTGNNNNNNAATCACT]

[+] EMBL CF311558             [GTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTGAGTATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGAGCATGGCTGCATCACAAGAATCAACAATG TTGCCAAGAGGTTCAACAAGTTGCTGAGCGAAACCTGCGATGATCTGCGCTTGC AATTCGCAAGC TCGACGATCGTCTTCGTGGACATGTTC GCCATCAAGTATGATCTTGTTGCCAACCACAC GAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACC                                                                                                                                                                                                                         ]
[+] EMBL CF308753             [GTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTGAGTATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGAGCATGGCTGCATCACAAGAATCAACAATG TTGCCAAGAGGTTCAACAAGTTGCTGAGCGAAACCTGCGATGATCTGCGCTTGC AATTCGCAAGC TCGACGATCGTCTTCGTGGACATGTTC GCCATCAAGTATGATCTTGTTGCCAACCACAC GAAACACGGGATTGAGAAGCCATTGATGA                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS12447A            [                         TTGGAGTCCATCGAAAGAGGTGAGGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGAGCATGGCTGCATCACAAGAATCAACAATG TTGCCAAGAGGTTCAACAAGTTGCTGAGCGAAACCTGCGATGATCTGCGCTTGC AATTCGCAAGC TCGACGGTCGTCTTCGTGGNCATGTTCGGCCATCAAGTATGATCTTGTTGCCAACCACACGGNAACACGGGGTTtn                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C91603               [                                               AGGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGAGCATGGCTGCATCACAAGAATCAACAATG TTGCCAAGAGGTTCAACAAGTTGCTGAGCGAAACCTGCGATGATCTGCGCTTTC AATTCGCAAGCTTCGACGATCGTCTTCGTGGACATGTTC GCCATCAAGTATGATCTTGTTG                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU164263             [                                               AGGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGAGCATGGCTGCATCACAAGGATCAACAATGTTTCCCAAGAGGTTCAACAAGTTNCTGAGCGGAACCTGCGATGATCTTCGGTTNCAAATTCGCAAGN TCGACGGTCcg                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF196750             [                                                                                                                                                                                                    GAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGATCTCGACGAGCATGGCTGCATCACAAGAATCAACAATG TTGCCAAGAGGTTCAACAAGTTGCTGAGCGAAACCTGCGATGATCTGCGCTTGC AATTCGCAAGC TCGACGATCGTCTTCGTGGACATGTTC GCCATCAAGTATGATCTTGTTGCCAACCACAC GAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTANGNNNANTTTGGTTTCNNANNNNNNNGGTGNNNNNNAATCACT]




>consensus_14725#1
GTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTGAGGATGCCCCAAT
TGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCACAATGATTTAAT
GGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCCCATAGTTGCTGA
AATCAGGAAAGCCATTGAGACTTTGCATAAGAATGGGGCCAAGAAGTTTTGGATACATGG
AACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGAAATTGATCGTGA
TCTCGACGAGCATGGCTGCATCACAAGAATCAACAATGTTGCCAAGAGGTTCAACAAGTT
GCTGAGCGAAACCTGCGATGATCTGCGCTTGCAATTCGCAAGCTCGACGATCGTCTTCGT
GGACATGTTCGCCATCAAGTATGATCTTGTTGCCAACCACACGAAACACGGGATTGAGAA
GCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAG
CTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGG
GGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATT
TTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTC
GCGGTTATGAAAAATTANGNNNANTTTGGTTTCNNANNNNNNNGGTGNNNNNNAATCACT

consensusID : consensus_14725#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 483
fasta sequence

                              [NGNANCGGGTGGGTNTCGCCATCAAGTATGATCTTGTTGCCAACCACACGAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTTCCCAAAGGAAATGGTGAAGGTGAATCACTAACAGATCTTGCCAACAG-AGGGGATTCATTTGATTTCAGGCCCTTTTCGGTCATTTAGG-AGGACAG-ATATGAGGAATTTCAAAATTTTATTTTTTTTGTAAAAAAAAAAAAAAAA]

[+] EMBL OSC3261              [NGNANCGGGTGGGTNTCGCCATCAAGTATGATCTTGTTGCCAACCACACGAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTTCCCAAAGGAAATGGTGAAGGTGAATCACTAACAGATCTTGCCAACAG AGGGGATTCATTTGATTTCAGGCCCTTTTCGGTCATTTAGG AGGACAG ATATGAG                                          ]
[+] EMBL AU098328             [         TGGGT TCGCCATCAAGTATGATCTTGTTGCCAACCACACGAAACACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTTCCCAAAGGAAATGGTGAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTTTTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTAAAAAAAAAAAAAAAA]




>consensus_14725#2
NGNANCGGGTGGGTNTCGCCATCAAGTATGATCTTGTTGCCAACCACACGAAACACGGGA
TTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATGATCCGA
AGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCATCAGCT
GGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGATAAGTG
GCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAAAGGCTA
AAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTTCCCAAAGGAAATGGTGAAGGT
GAATCACTAACAGATCTTGCCAACAGAGGGGATTCATTTGATTTCAGGCCCTTTTCGGTC
ATTTAGGAGGACAGATATGAGGAATTTCAAAATTTTATTTTTTTTGTAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14725#0      GCAGCTTGATCAGTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTCG 60
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      ------------------------------------------------------------
                                                                                   

consensus_14725#0      GTTTGATCTTAATTTGGTGACATTTTGTTCTAAGCAAAGTGTTCCTTTTTTGCGCAATTA 120
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      ------------------------------------------------------------
                                                                                   

consensus_14725#0      ATTGGGTTTCCGACTTATTTGCATTGTTTTGGAGTGACAAAGTTGCTTAATTTTGGTGAA 180
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      ------------------------------------------------------------
                                                                                   

consensus_14725#0      TGTCATCCAGGTGAGGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACC 240
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      ------------------------------------------------------------
                                                                                   

consensus_14725#0      ATGGACATAGGGCACAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTT 300
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      ------------------------------------------------------------
                                                                                   

consensus_14725#0      CGAAAGCTTCCTCCCATAGTTGCTGAAATCAGGAAAGCCATTGAGGTACATTTGGTTCAA 360
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      ------------GTTCATATTTTTCAAGGAGAGATGCTTGGAGTCCATCGAAAGAGGTGA 48
                                                                                   

consensus_14725#0      GTCAATAAAACAGTAGCACATATGATAAATTATTCTCAGTAAACAGCTCAAATTTTTATC 420
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      GGATGCCCCAATTGATAGCAAAGGGTTTGAAAATGCCCTCTATACCATGGACATAGGGCA 108
                                                                                   

consensus_14725#0      TAAACTTCTCCCTTAAACCAGTAAGTTCTGAAGTAAAAAAAAAATACTATCAGTTATTCA 480
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      CAATGATTTAATGGGCGTTTTGCACTTGTCCTATGATGAAATTCTTCGAAAGCTTCCTCC 168
                                                                                   

consensus_14725#0      GAGAAATGATCATTGAACCCTTGCCAAACTGCAGACTTTGCATAAGAATGGGGCCAAGAA 540
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      CATAGTTGCTGAAATCAGGAAAGCCATTGAGACTTTGCATAAGAATGGGGCCAAGAAGTT 228
                                                                                   

consensus_14725#0      GTTTTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGG 600
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      TTGGATACATGGAACGGGTGCATTGGGTTGCCTGCCTCAGAAGCTTGCTACGAGGGGGGA 288
                                                                                   

consensus_14725#0      GGAAATTGATCGTGATCTCGACGGGCATGGCTGCATCACAAGAATCAACAATGTTGCCAA 660
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      AATTGATCGTGATCTCGACGAGCATGGCTGCATCACAAGAATCAACAATGTTGCCAAGAG 348
                                                                                   

consensus_14725#0      GAGGTTCAACAAGTTGAGCGAAACCTGCGATGATCTGCGCTTGCAATTCGCAAGCTCGAC 720
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      GTTCAACAAGTTGCTGAGCGAAACCTGCGATGATCTGCGCTTGCAATTCGCAAGCTCGAC 408
                                                                                   

consensus_14725#0      GATCGTCTTCGTGGACATGTT-CGCCATCAAGTATGATCTTGTTGCCAACCACACGAAAC 779
consensus_14725#2      ------NGNANCGGGTGGGTNTCGCCATCAAGTATGATCTTGTTGCCAACCACACGAAAC 54
consensus_14725#1      GATCGTCTTCGTGGACATGTT-CGCCATCAAGTATGATCTTGTTGCCAACCACACGAAAC 467
                                   **    **  **************************************

consensus_14725#0      ACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATG 839
consensus_14725#2      ACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATG 114
consensus_14725#1      ACGGGATTGAGAAGCCATTGATGACATGTTGTGGACATGGAGGGCCCCCTTACAACTATG 527
                       ************************************************************

consensus_14725#0      ATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCA 899
consensus_14725#2      ATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCA 174
consensus_14725#1      ATCCGAAGAAAAGCTGCACGGCCAATGACAAGGACCTGTGTAAGCTTGGTGAGAAGTTCA 587
                       ************************************************************

consensus_14725#0      TCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGA 959
consensus_14725#2      TCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGA 234
consensus_14725#1      TCAGCTGGGATGGGGTCCACTTCACCGATGCTGCAAACGAGATCGTTGCTTCTAAAGTGA 647
                       ************************************************************

consensus_14725#0      TAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAA 1019
consensus_14725#2      TAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAA 294
consensus_14725#1      TAAGTGGCGAATTTTCCATTCCTAGGATCAAGCTGACCGCCAGCGTTGTCAGGCCCAAAA 707
                       ************************************************************

consensus_14725#0      AGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTTCCCAAAGGAAATGGT 1079
consensus_14725#2      AGGCTAAAAATTCGCGGTTATGAAAAATTAAGATTATTTTGGTTTCCCAAAGGAAATGGT 354
consensus_14725#1      AGGCTAAAAATTCGCGGTTATGAAAAATTANGNNNANTTTGGTTTCNNANNNNNNN-GGT 766
                       ****************************** *   * *********  *        ***

consensus_14725#0      GAAGGTGAATCACTAACAGATCTGGCCAACAGAAGGGAATTCATTTGATTTCAGGCCCTT 1139
consensus_14725#2      GAAGGTGAATCACTAACAGATCTTGCCAACAGA-GGGGATTCATTTGATTTCAGGCCCTT 413
consensus_14725#1      GNNNNNNAATCACT---------------------------------------------- 780
                       *      *******                                              

consensus_14725#0      TTCGGTCATTGAGGAAGAACAGAATATGAAGAATTTCAAAATTTTATTTTTTTTGTACAC 1199
consensus_14725#2      TTCGGTCATTTAGGA-GGACAGA-TATGAGGAATTTCAAAATTTTATTTTTTTTGTAAAA 471
consensus_14725#1      ------------------------------------------------------------
                                                                                   

consensus_14725#0      TTGGGGTGTGTGTGTATATCCTAGGGGGTTGATACGTGCAGGTTAATACTATGTATAATT 1259
consensus_14725#2      AAAAAAAAAAAA------------------------------------------------ 483
consensus_14725#1      ------------------------------------------------------------
                                                                                   

consensus_14725#0      CTTTTCTTTAATTTTGATAAATAAATAGAGATGAATCTATAAATTTAAATCAAAAAAAAA 1319
consensus_14725#2      ------------------------------------------------------------
consensus_14725#1      ------------------------------------------------------------
                                                                                   

consensus_14725#0      AAAAAAAAAAAAAAAAAAAA 1339
consensus_14725#2      --------------------
consensus_14725#1      --------------------