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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14729#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1833 fasta sequence
[GGTCTGGGAAGTACTCCATCTACAGGGAGATTGATGATGACGATTTTGAGGAATCTGATGATGATTCTGAAGAGAGGAATACCTCATCTCTGCCTGAAGAAGGGGAAATAGGAGAATTTGAAGATGAAGAGGACAATGATGATTCAGTGCCTGATAATAAGGATCAATCAGAGGAAGAAGAGCCTATCAATGATGAAGGGTATGATTTTTCACATGGGATGGGACGCAGAAAAGCCCATAGATCTGAAGAAGCTGGTTCAACAGGATCTTCATCTGGTGGCCGTAGATTGCCACCACCTGCACCTTCCTCCTCTTCAAAAAAATTGCGGTCTTTGTCTGCATTAGATTCCCGCCCGGGTGCTTTGTCAAAGAGAACTGCAGATGACCTAGAGGAAGGAGAAATTGCATTATCAGGGGATTCACATCTGGATCTCCAGCAGTCAGGCAGCTGGAATCATGAACGAGATGATGGTGAGGATGAACAGGTAGTACAGCCAAAAATAAAGCGCAAGCGGAGTATCCGTATTCGTCCAAGACCTAATGCAGAAAAACTGGATGATAGATCCGGTGATGGGACCGTCCCTCAACGTGGTGTTCATCTTGCATTTCAAGGAGATGGTGATTATGATTCACAATTTAAGTCTGAGCAAGCCTTTGCTGATCCTGCTTCCAGGCAGCAAGACACAGTTCATCGGACAGTAAAACAAAAGCGTAACATGCCATCTAGAAAGGCTCCCCCTGCCACTAAGGCTGGGAAAATGACTCAGCTGTCTGGATCTGGTGAGGGATCTGCTGAACATTCTAAGGAAAATTGGAGTAACAAG-GTGATAGA-ATCT-GCTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGA-GGGTCATCAAATCATACCAAATATATCTTCTTGGTGGCGTAGGAACGAGAATTCCTCATTCAAAGGTTTGGCTAGCAGCACC-CTTGATCTACAGAAAATTGAACAACGAGTTGATGGATTTGAGTATGGCGGTGTGAATGAATTCATAGCTGACATGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGATTGCCTTTCCGGACTCAGACTTCAGAGAAGCTAAGGGTGCTATGTCATTTTCGAATCCTGGAGGAGGTGCAAGTGGCTCTGCTGCGCAATCAACAAAGCAATCTGCTTCAGGCCAGAAACGTCGTTCAAGCACCAGTGAAGCGGAGCAGCATGGTTCAAGCACTAGCAGACACAATCAGCATGCACCAGTTGGTGAGGTTTCAGGCCGGGCCCACACTTCAAAATCTGAGAAGGACTCCCGGCATTCTGGACCAGGTAGCAGGGAACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCT-CCCGACC-ACGCCGGGCGGATGGGACCGGCGCCACAACCTA-AAGTGCCAGGACGCCC-TCC-AAGAGAACC-CACCCTTCT-AGCA-TCT-TGCATTCA-CT-GATGGGG-GCTTATT-TTTGCA-CATTC-GACC---GGGGGA-TTC-TTACCC-GC-TTTGA-AC-TTCA--GGGCTAACCTCAAAATCAGCCTTTTTGGAAGCCGCCACCCTTTCAAAAAAGAGGTTGTTTTTTGGTGGGGGTAATCTTCCCTCAATTTTACCTCCCCCGTATTTGAC]
[+] EMBL CB661341 [GGTCTGGGAAGTACTCCATCTACAGGGAGATTGATGATGACGATTTTGAGGAATCTGATGATGATTCTGAAGAGAGGAATACCTCATCTCTGCCTGAAGAAGGGGAAATAGGAGAATTTGAAGATGAAGAGGACAATGATGATTCAGTGCCTGATAATAAGGATCAATCAGAGGAAGAAGAGCCTATCAATGATGAAGGGTATGATTTTTCACATGGGATGGGACGCAGAAAAGCCCATAGATCTGAAGAAGCTGGTTCAACAGGATCTTCATCTGGTGGCCGTAGATTGCCACCACCTGCACCTTCCTCCTCTTCAAAAAAATTGCGGTCTTTGTCTGCATTAGATTCCCGCCCGGGTGCTTTGTCAAAGAGAACTGCAGATGACCTAGAGGAAGGAGAAATTGCATTATCAGGGGATTCACATCTGGATCTCCAGCAGTCAGGCAGCTGGAATCATGAACGAGATGATGGTGAGGATGAACAGGTAGTACAGCCAAAAATAAAGCGCAAGCGGAGTATCCGTATTCGTCCAAGACCTAATGCAGAAAAACTGGATGATAGATCCGGTGATGGGACCGTCCCTCAACGTGGTGTTCATCTTGCATTTCAAGGAGATGGTGATTATGATTCACAATTTAAGTCTGAGCAAGCCTTTGCTGATCCTGCTTCCAGGCAGCAAGACACAGTTCATCGGACAGTAAAACAAAAGCGTAACATGCCATCTAGAAAGGCTCCCCCTGCCACTAAGGCTGGGAAAATGACTCAGCTGTCTGGATCTGGTGAGGGATCTGCTGAACATTCT ]
[+] EMBL CB677034 [ AGAGCCATTCCTCATCTCTGCCTGAAGAAGGGGAAATAGGAGAATTTGAAGATGAAGAGGACAATGATGATTCAGTGCCTGATAATAAGGATCAATCAGAGGAAGAAGAGCCTATCAATGATGAAGGGTATGATTTTTCACATGGGATGGGACGCAGAAAAGCCCATAGATCTGAAGAAGCTGGTTCAACAGGATCTTCATCTGGTGGCCGTAGATTGCCACCACCTGCACCTTCCTCCTCTTCAAAAAAATTGCGGTCTTTGTCTGCATTAGATTCCCGCCCGGGTGCTTTGTCAAAGAGAACTGCAGATGACCTACAGGAAGGAGAAATTGCATTATCAGGGGATTCACATCTGGATCTCCAGCAGTCAGGCAGCTGGAATCATGAACGAGATGATGGTGAGGATGAACAGTTAGTACAGCCAAAAATAAAGCGCAAGCGGAGTATCCGTATTCGTCCAAGACCTAATGCAGAAAAACTGGATGATAGATCCGGTGATGGGACCGTCCCTCAACGTGGTGTTCATCTTGCATTTCAAGGAGATGGTGATTATGATTCACAATTTAAGTCTGAGCAAGCCTTTGCTGATCCTGCTTCCAGGCAGCAAGACACAGTTCATCGGACAGTAAAACAAAAGCGTAACATGCCATCTAGAAAGGCTCCCCCTGCCACTAAGGCTGGGAAAATGACTCAGCTGTCTGGATCTGGTGAGGGATCTGCTGAACATTCTAAAGAAAATTGGAGTAACAAG GTGA ]
[+] EMBL CB673979 [ ATCTCTGCCTGAAGAAGGGGAAATAGGAGAATTTGAAGATGAAGAGGACAATGATGATTCAGTGCCTGATAATAAGGATCAATCAGAGGAAGAAGAGCCTATCAATGATGAAGGGTATGATTTTTCACATGGGATGGGACGCAGAAAAGCCCATAGATCTGAAGAAGCTGGTTCAACAGGATCTTCATCTGGTGGCCGTAGATTGCCACCACCTGCACCTTCCTCCTCTTCAAAAAAATTGCGGTCTTTGTCTGCATTAGATTCCCGCCCGGGTGCTTTGTCAAAGAGAACTGCAGATGACCTAGAGGAAGGAGAAATTGCATTATCAGGGGATTCACATCTGGATCTCCAGCAGTCAGGCAGCTGGAATCATGAACGAGATGATGGTGAGGATGAACAGGTAGTACAGCCAAAAATAAAGCGCAAGCGGAGTATCCGTATTCGTCCAAGACCTAATGCAGAAAAACTGGATGATAGATCCGGTGATGGGACCGTCCCTCAACGTGGTGTTCATCTTGCATTTCAAGGAGATGGTGATTATGATTCACAATTTAAGTCTGAGCAAGCCTTTGCTGATCCTGCTTCCAGGCAGCAAGACACAGTTCATCGGACAGTAAAACAAAAGCGTAACATGCCATCTAGAAAGGCTCCCCCTGCCACTAAGGCTGGGAAAATGACTCAGCTGTCTGGATCTGGTGAGGGATCTGCTGAACATTCTAAGGAAAATTGGAGTAACAAG GTGATAGA ATCT GCTGGTCCAAATTCAAGTGGAACAAAGATGT ]
[+] EMBL CB675709 [ GATGATAGATCCGGTGATGGGACCGTCCCTCAACGTGGTGTTCATCTTGCATTTCAAGGAGATGGTGATTATGATTCACAATTTAAGTCTGAGCAAGCCTTTGCTGATCCTGCTTCCAGGCAGCAAGACACAGTTCATCGGACAGTAAAACAAAAGCGTAACATGCCATCTAGAAAGGCTCCCCCTGCCACTAAGGCTGGGAAAATGACTCAGCTGTCTGGATCTGGTGAGGGATCTGCTGAACATTCTAAGGAAAATTGGAGTAACAAG GTGATAGA ATCT GCTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGA GGGTCATCAAATCATACCAAATATATCTTCTTGGTGGCGTAGGAACGAGAATTCCTCATTCAAAGGTTTGGCTAGCAGCACC CTTGATCTACAGAAAATTGAACAACGAGTTGATGGATTTGAGTATGGCGGTGTGAATGAATTCATAGCTGACATGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGATTGCCTTTCCGGACTCAGACTTCAGAGAAGCTAAGGGTGCTATGTCATTTTCGAATCCTGGAGGAGGTGCAAGTGGCTCTGCTGCGCAATCAACAAAGCAATCTGCTTCANGCCAGAAACGTC ]
[+] EMBL CB682510 [ AAGGCTGGGAAAATGACTCAACTGTCTGGATCTGGTGAGGGATCTGCTGAACATTCTAAGGAAAATTGGAGTAACAAGCGTGATAGACATCTCGCTGGACCAAATTCAAGTGGAACAAAGATGTCTGACAGAATGCAAAGAAAGTGCAAAAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGACGGGTCATCAAATCATACCAAATATATCTTCTTGGTGGCGTAGGAACGAGAATTCCTCATTCAAAGGTTTGGCTAGCAGCACC CTTGATCTACAGAAAATTGAACAACGAGTTGATGGATTTGAGTATGGAGGTGTGAATGAATTCATATCTGACATGCAGCACATGCTGAAAAGTGCGGCTCAACATTTCAGCTATAGGCATGAGGTCCGAGTACAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGATTGCCTTTCCGGACTCAGACTTCATACAACCTAAAGGTGCTATGTCATTTTCAAATCCTGCACGACGTGCAAGTGGCTCTGCTGCGCAATCAACAAAGCA ]
[+] EMBL BE039765 [ AGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGA GGGTCATCAAATCATACCAAATATATCTTCTTGGTGGCGTAGGAACGAGAATTCCTCATTCAAAGGTTTGGCTAGCAGCACC CTTGATCTACAGAAAATTGAACAACGAGTTGATGGATTTGAGTATGGCGGTGTGAATGAATTCATAGCTGACATGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGATTGCCTTTCCGGACTCAGACTTCAGAGAAGCTAAGGGTGCTATGTCATTTTCGAATCCTGGAGGAGGTGCAAGTGGCTCTGCTGCGCAATCAACAAAGCAATCTGCTTCAGGCCAGAAACGTCGTTCAAGCACCAGTGAAGCGGAGCAGCATGGTTCAAGCACTAGCAGACACAATCAGCATGCACCAGTTGGTGAGGTTTCAGGCCGGGCCCACACTTCAAAATCTGAGAAGGACTTCCGGCATTCTGGACCAGGTAGCAAGGAACAGTTCACGGATAGCGCAAGGTTGTTCAGGCACCCTACAGATATGTTCATAGTTTAGAAGAAGAGAGATCGAAGGCCCACCCTGGGGTC CCATCCAGTTCAGGCCGAACTGGACCGCTCT CCCGACC ACGCCGGGCGGATGGGACCGGCGCCACAACCTA AAGTGCCAGGACGCCC TCC AAGAGAACC CACCCTTCT AGCA TCT TGCATTCA CT GATGGGG GCTTATT TTTGCA CATTC GACC GGGGGA TTC TTACCC GC TTTGA AC TTCA GGGCTAACCTCAAAATCAGCCTTTTTGGAAGCCGCCACCCTTTCAAAAAAGAGGTTGTTTTTTGGTGGGGGTAATCTTCCCTCAATTTTACCTCCCCCGTATTTGAC]
[+] EMBL CB678443 [ CAAAGA CCTTCATAAAATCATACCAAATATATCTTCTTGGTGGCGTAGGAACGAGAATTCCTCATTCAAAGGTTTGGCTAGCAGCACC CTTGATCTACAGAAAATTGAACAACGAGTTGATGGATTTGAGTATGGCGGTGTGAATGAATTCATAGCTGACATGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGATTGCCTTTCCGGACTCAGACTTCAGAGAAGCTAAGGGTGCTATGTCATTTTCGAATCCTGGAGGAGGTGCAAGTGGCTCTGCTGCGCAATCAACAAAGCAATCTGCTTCAGGCCAGAAACGTCGTTCAAGCACCAGTGAAGCGGAGCAGCATGGTTCAAGCACTAGCAGACACAATCAGCATGCACCAGTTGGTGAGGTTTCAGGCCGGGCCCACACTTCAAAATCTGAGAAGGACTCCCGGCATTCTGGACCAGGTAGCAGGGAACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCT CCCcg ]
[+] EMBL CB652757 [ CTCATTCCAAGGTTTGGCTAGCAGCACCTCTTGATCTACAGAAAATTGAACAACGAGTTGATGGATTTGAGTATGGCGGTGTGAATGAATTCATAGCTGACATGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGGTCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGATTGCCTTTCCGGACTCAGACTTCAGAGAAGCTAAGGGTGCTATGTCATTTTCGAATCCTGGAGGAGGTGCAAGTGGCTCTGCTGCGCAATCAACAAAGCAATCTGCTTCAGGCCAGAAACGTCGTTCAAGCACCAGTGAAGCGGAGCAGCATGGTTCAAGCACTAGCAGACACAATCAGCATGCACCAGTTGGTGAGGTTTCAGGCCGGGCCCACACTTCAAAATCTGAGAAGGACTCCCGGCATTCTGGACCAGGTAGCAGGGAACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTCTGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCT ]
consensusID : consensus_14729#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 925 fasta sequence
[TCAAGCACTAGCAGACACAATCAGCATGCACCAGTTGGTGAGGTTTCAGGCCGGGCCCACACTTCAAAATCTGAGAAGGACTCCCGGCATTCTGGACCAGGTAGCAGGGAACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTC-TGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTCTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACA-TTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAATGAAGCTGAGCCGGTTATAATAG-TGTAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB661342 [TCAAGCACTAGCAGACACAATCAGCATGCACCAGTTGGTGAGGTTTCAGGCCGGGCCCACACTTCAAAATCTGAGAAGGACTCCCGGCATTCTGGACCAGGTAGCAGGGAACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTC TGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTCTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACA TTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAATGAAGCTGAGCC ]
[-] EMBL CB675710 [ CAAGCACTAGCAGACACAATCAGCATGCCCCAGTTGGTGAGGTTTCAGGCCGGGCCCACACTCAAAAATCTGAGAAGGACTCCCGGCATTCTGGACCAGGTAGCAGGGAACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTC TGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTCTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACA TTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAATGAAGCTGAGCCGGTTATAA ]
[-] EMBL CB673980 [ AGGGAACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCNTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTC TGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTCTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACA TTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAGGGAAATGAAGCTGAGCCGGTTATAATAG TGT ]
[-] EMBL CB682511 [ GGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTC TGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTCTTTGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACA TTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAAGGAAATGAAGCTGACCCGGTTATAATAG TGTAAAAAAAAgg ]
[-] EMBL CB677035 [ ATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTC TGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTCTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACA TTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAAGGAAGCTGAGCCGGTTATAATAGTTGTTAAAAAAAAAAAAGAA ]
[+] EMBL BI808013 [ GCTCATTCTTGTTCA CAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTCTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACACTTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCC ACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAATGAAGCTGAGCCGGTTATAATA AAAAAAA ]
[+] EMBL AU057929 [ ACACCCATTTCTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACA TTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAATGAAGCTGAGCCGGTTATAATAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AT003728 [ TGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAATGAAGCTGAGCCGGTTATAATA AAAAAAAA ]
consensusID : consensus_14729#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence
[AACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTCTGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTTTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACATTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAATGAAGCTGAGCCGGTTATAATAGTTGTATATCTCCATCTCTTT]
[-] EMBL CB652758 [AACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATATGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCTCCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGTGCCAGGACGCCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCTCATTCTGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTACCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACACCCATTTTTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTGTCATGGACATTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGATGATGTAGTTTAGTAGCCATGGAATGAAATGAAATGAAGCTGAGCCGGTTATAATAGTTGTATATCTCCATCTCTTT]
[+] EMBL AA750181 [ AAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGGTTTTGACA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14729#1 -----------------------------------------------------TCAAGCA 7
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 GGTCTGGGAAGTACTCCATCTACAGGGAGATTGATGATGACGATTTTGAGGAATCTGATG 60
consensus_14729#1 CTAGCAGACACAATCAGCATGCACCAGTTGGTGAGGTTTCAGGCCGGGCCCACACTTCAA 67
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 ATGATTCTGAAGAGAGGAATACCTCATCTCTGCCTGAAGAAGGGGAAATAGGAGAATTTG 120
consensus_14729#1 AATCTGAGAAGGACTCCCGGCATTCTGGACCAGGTAGCAGGGAACAGTTCACGGAT---- 123
consensus_14729#2 ------------------------------------------AACAGTTCACGGAT---- 14
consensus_14729#0 AAGATGAAGAGGACAATGATGATTCAGTGCCTGATAATAAGGATCAATCAGAGGAAGAAG 180
* ** * ***
consensus_14729#1 AGCGCAGGGCTGTTCAGGC-----ACCCTACAGATATGTTCATA-GTTAAGAAGAAGAGA 177
consensus_14729#2 AGCGCAGGGCTGTTCAGGC-----ACCCTACAGATATGTTCATA-GTTAAGAAGAAGAGA 68
consensus_14729#0 AGCCTATCAATGATGAAGGGTATGATTTTTCACATGGGATGGGACGCAGAAAAGCCCATA 240
*** * ** * * * * * ** ** * * * * * *** * *
consensus_14729#1 GATC---GAAGGCCGAGCC--TGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCT 232
consensus_14729#2 GATC---GAAGGCCGAGCC--TGGGGTCTCCATCCAGTTCAGGCCGAACTGGACCGCTCT 123
consensus_14729#0 GATCTGAAGAAGCTGGTTCAACAGGATCTTCATCTGGTGGCCGTAGATTGCCACCACCTG 300
**** * ** * * ** *** **** ** * ** *** *
consensus_14729#1 CCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGT----GCCAGGACG 288
consensus_14729#2 CCCCGACCAACGCCGGGCGGATGGGACCGGCGCCATCACCTAGAGGT----GCCAGGACG 179
consensus_14729#0 CACCTTCCTCCTCTTCAAAAAAATTGCGGTCTTTGTCTGCATTAGATTCCCGCCCGGGTG 360
* ** ** * * * * * * ** * ** * *** ** *
consensus_14729#1 CCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCT 348
consensus_14729#2 CCCTTCCAAAGAGATCCACACCCTTCTCAGCAGTCTATGCATTCAGCTGGATGGGGTGCT 239
consensus_14729#0 CTTTGTCAAAGAGAACTGCAGATGACCTAGAGGAAGGAGAAATTGCATTATCAGGGGATT 420
* * ******** * ** * ** * * * * * *** *
consensus_14729#1 CAT-TCTG----TGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACA 403
consensus_14729#2 CAT-TCTG----TGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACA 294
consensus_14729#0 CACATCTGGATCTCCAGCAGTCAGGCAGCTGGAATCATGAACGAGATGATGGTGAGGATG 480
** **** * ***** ** * * ** * * * * ** **
consensus_14729#1 TCCAGTGGGCTAAACCTA---CCAAG---AGATCGAGGACTGATAGTGGCAAAAGAC--- 454
consensus_14729#2 TCCAGTGGGCTAAACCTA---CCAAG---AGATCGAGGACTGATAGTGGCAAAAGAC--- 345
consensus_14729#0 AACAGGTAGTACAGCCAAAAATAAAGCGCAAGCGGAGTATCCGTATTCGTCCAAGACCTA 540
*** * * ** * *** * *** * ** * * *****
consensus_14729#1 ----GGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTG--CGGT 508
consensus_14729#2 ----GGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCATTG--CGGT 399
consensus_14729#0 ATGCAGAAAAACTGGATGATAGATCCGGTGATGGGACCGTCCCTCAACGTGGTGTTCATC 600
* ** * *** * * **** ** ** * ** *
consensus_14729#1 GTACATTCCT------TAGCACCCTTGAATCTTGATTGACCTCT---CTACCCGCTGCTG 559
consensus_14729#2 GTACATTCCT------TAGCACCCTTGAATCTTGATTGACCTCT---CTACCCGCTGCTG 450
consensus_14729#0 TTGCATTTCAAGGAGATGGTGATTATGATTCACAATTTAAGTCTGAGCAAGCCTTTGCTG 660
* **** * * * *** ** *** * *** * * ** *****
consensus_14729#1 ATTCTGG------------------AGCCCATTGGCCTG---------GTTTTGACACCC 592
consensus_14729#2 ATTCTGG------------------AGCCCATTGGCCTG---------GTTTTGACACCC 483
consensus_14729#0 ATCCTGCTTCCAGGCAGCAAGACACAGTTCATCGGACAGTAAAACAAAAGCGTAACATGC 720
** *** ** *** ** * * * *** *
consensus_14729#1 ATTTCTTCGTCGCCATTCCTGCCATCCTT-CAAAGAAGTTATCACGACCGTCTGGGACTG 651
consensus_14729#2 ATTTTTTCGTCGCCATTCCTGCCATCCTT-CAAAGAAGTTATCACGACCGTCTGGGACTG 542
consensus_14729#0 CATCTAGAAAGGCTCCCCCTGCCACTAAGGCTGGGAAAATGACTCAGCTGTCTGGATCTG 780
* ** ******* * *** * * * * ****** ***
consensus_14729#1 ACTTGTGTTGTCATGGACATTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTG 711
consensus_14729#2 ACTTGTGTTGTCATGGACATTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTG 602
consensus_14729#0 GTGAGGGATCTGCTGAACATTCTAAGGAAAATTGGAGTAACAAGGTGATAGAATCTGCTG 840
* * * * ** ***** * * ** * ** * * * * * ** **
consensus_14729#1 GTATTTTCTGTAAAGGG-CAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCG 770
consensus_14729#2 GTATTTTCTGTAAAGGG-CAAACACATTTAATCTTGTTCTCTGTTGACTGTTAAGTAGCG 661
consensus_14729#0 GTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGC---AAAGAAAGTGCAAGAACG 897
** * * ** **** * * * * * * * ** ** * * **
consensus_14729#1 CTCCATCCAA---CTGGAGATGTGATGGCGA-------TCTCATGTCATGATGA-TGTAG 819
consensus_14729#2 CTCCATCCAA---CTGGAGATGTGATGGCGA-------TCTCATGTCATGATGA-TGTAG 710
consensus_14729#0 TGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCATCAAATCATACCAAATATAT 957
* *** ***** * ** * * *** **** * * **
consensus_14729#1 TTT---AGTAGCCATGGAATGAAATGAAATGAAGCTGAG--CCGGTTATAATAGT-GTAA 873
consensus_14729#2 TTT---AGTAGCCATGGAATGAAATGAAATGAAGCTGAG--CCGGTTATAATAGTTGTAT 765
consensus_14729#0 CTTCTTGGTGGCGTAGGAACGAGAATTCCTCATTCAAAGGTTTGGCTAGCAGCACCCTTG 1017
** ** ** **** ** * * * * ** ** ** * *
consensus_14729#1 AAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------- 925
consensus_14729#2 ATCTCCATCTCTTT---------------------------------------------- 779
consensus_14729#0 ATCTACAGAAAATTGAACAACGAGTTGATGGATTTGAGTATGGCGGTGTGAATGAATTCA 1077
* *
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 TAGCTGACATGCAGCAGATGCTGAAAAGTGTGGTTCAACATTTCAGCTATAGGCATGAGG 1137
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 TCCGAGTAGAAGCTGAGACCCTCCACAACTTATTTTTCAATATAATGAAGATTGCCTTTC 1197
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 CGGACTCAGACTTCAGAGAAGCTAAGGGTGCTATGTCATTTTCGAATCCTGGAGGAGGTG 1257
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 CAAGTGGCTCTGCTGCGCAATCAACAAAGCAATCTGCTTCAGGCCAGAAACGTCGTTCAA 1317
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 GCACCAGTGAAGCGGAGCAGCATGGTTCAAGCACTAGCAGACACAATCAGCATGCACCAG 1377
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 TTGGTGAGGTTTCAGGCCGGGCCCACACTTCAAAATCTGAGAAGGACTCCCGGCATTCTG 1437
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 GACCAGGTAGCAGGGAACAGTTCACGGATAGCGCAGGGCTGTTCAGGCACCCTACAGATA 1497
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 TGTTCATAGTTAAGAAGAAGAGAGATCGAAGGCCGAGCCTGGGGTCTCCATCCAGTTCAG 1557
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 GCCGAACTGGACCGCTCTCCCGACCACGCCGGGCGGATGGGACCGGCGCCACAACCTAAA 1617
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 GTGCCAGGACGCCCTCCAAGAGAACCCACCCTTCTAGCATCTTGCATTCACTGATGGGGG 1677
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 CTTATTTTTGCACATTCGACCGGGGGATTCTTACCCGCTTTGAACTTCAGGGCTAACCTC 1737
consensus_14729#1 ------------------------------------------------------------
consensus_14729#2 ------------------------------------------------------------
consensus_14729#0 AAAATCAGCCTTTTTGGAAGCCGCCACCCTTTCAAAAAAGAGGTTGTTTTTTGGTGGGGG 1797
consensus_14729#1 ------------------------------------
consensus_14729#2 ------------------------------------
consensus_14729#0 TAATCTTCCCTCAATTTTACCTCCCCCGTATTTGAC 1833
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||