These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1241 fasta sequence [GCCTTTTCCCTCTTCCTCACCTGCCTGACCTGGCCTGGCCTGGCCCCCAATCAAAAACGAGCGACCTCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCAT-GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC-GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG-AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC-GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC-TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC-ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACAAGTTGAAGCGATTGATACGTTTGTTGGGCTACTTATAAAGG] [+] EMBL AK065728 [GCCTTTTCCCTCTTCCTCACCTGCCTGACCTGGCCTGGCCTGGCCCCCAATCAAAAACGAGCGACCTCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCTTGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACAAGTT ] [+] EMBL OSS3593A [ TCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCA NATNGTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAA ] [+] EMBL CF307062 [ AACCAATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGC ] [+] EMBL CB618452 [ CGCCTCCTCCTCCGCCGCACGCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTACTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCC ] [+] EMBL AU182887 [ GGATTTAATATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAAa ] [+] EMBL AU172919 [ ATTACAGGCGCAGCCAT GTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACTGTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAAa ] [+] EMBL AU183136 [ AGCCCAAGGAGCAGGCCAATGNTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTTTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTTTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAAa ] [+] EMBL AK061983 [ TTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGC GGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAACACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGCCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACAAGTTGAAGCGA ] [-] EMBL CB654035 [ AAGAGCGGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATG AACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAAGAAGTTGAAGCGATTGATACGTTTGTTGGGCTACTTATAAAGG] [+] EMBL CA999590 [ GCTATCCAACCCTTGAAGAGAAAAAAGCTTTATGTAAC TTACATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGGTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCTTAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAACA TAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTGTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGCTTGAGGA GATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTCNAC ATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTG ] [+] EMBL BP184709 [ ATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGAC GTTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATGCTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAACTGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCACCTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAGCATCAGC TGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAA ] [+] EMBL CB683646 [ GCTGAAATGGCATTGTGATCAGGTTC ACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTCTAGCTACAATATAATTTCCCATGTGTGTACAATCTTTGGGGATAGTCAGCAATCAAAGAGAGATGCTGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGTGTCGTCTGTTTTCCATGCACATAATTTAAGTTAATCTGGCACAGTAAGCTCCAAGCTAATCCATAGTCATGCAATGTGCATTGCTGTCGCACAATATTTTTCATTGACCATGAAGCCGTGTAAAACAAGTTGA ] consensusID : consensus_14733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 729 fasta sequence [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC-GCGCC-GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCG-GCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGC-AGCCATG-TTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGANGGCTAAGGAG-TCTNAAAAAGCAAAGAATAAAAGAGCGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACGTTGATAAGACTATGGATGAAATTAATNAACAGAANGAAAAA] [+] EMBL AU085945 [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC GCGCC GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCG CCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCG CCTAGGTTTTGACCGCCGCGGCG GCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGCAAGCCATG TTCAACAGGCTCTTTGGTAAGCCCAAGGAGCANGCCAATGCTAGTGCGTTGGNCACGCTTGATAAGGTAAATGAGACCCTTGACATGCTGGAGAAGAANGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGANGGCTAAGGAG TCTNAAAAAGCAAAGAATAAAAGA ] [+] EMBL AU101457 [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC GCGCC GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCGCGCG GGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGC A NAATGTTTCAACAGGCTCTTTGGTAAG CCAAGGAGCAGGCCAATGCTAGTGCGTTGG CACGNTTGATAAGTTAAATGAGACCCTTGANATG TTGAGAAGAAGGAGAAAGT TTAGNGAAAA GCAGCg ] [+] EMBL AU183137 [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC GCGCC GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCG GCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGC AGCCATG TTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAG ] [+] EMBL AU101461 [AATCCGCCGCCGCGCTGCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCACGCCCGCCCGCCGACGAATCAGGTGAGC GCGCC GCCCTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCG GCGCGGGCTCTGCTCGGATCGCCGGTGGTNCGGCCGGAACATGAGTTTGGATTTAATA ] [+] EMBL AU085946 [ GCCGACGAATCAGGTGAGCGGNNCCGGCCTTCCTCCCCCTCCCGCTATAGATCCGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAACTCCGCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCG GCGCGGGCTCTGCTCGGATCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGCGC AGCCATG TTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGTTAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCGCAGAACTGGAGAGGGCTAAGGAGTTCT CAAAAGCAAAGAATAAAAGAGCGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACGTTGATAAGACTATGGATGAAATTAATNAACAGAANGAAAAA] consensusID : consensus_14733#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [TGTNCAACGAGTCTATTCTACAATATAATTTCCCATGTGTGTACNATCTTTTGGGGATAGTCAGCAATCGAAGATGAGATGCTGCTGCAGTCCAGTACTCCAGTGTTGTGTTTTAGTGGCTTTGGGGGTGGGGGCCGGGTGTCGTCTGTTTTCCACTGGACATAATTTAAGTTAATCTGGCACCAGTAAGCTCCAAGCTAATCCANAGTCATGCAATGTGCATTCTGTCGCACAATATTTTTCATTGACCATTATCTGAACCGTGTAAAAAAAGTTGAAGCGATTGATACGTTGTTGGCTTTCTGCTTCAAAAAAAAAA] [+] EMBL BI807246 [TGTNCAACGAGTCTATTCTACAATATAATTTCCCATGTGTGTACNATCTTTTGGGGATAGTCAGCAATCGAAGATGAGATGCTGCTGCAGTCCAGTACTCCAGTGTTGTGTTTTAGTGGCTTTGGGGGTGGGGGCCGGGTGTCGTCTGTTTTCCACTGGACATAATTTAAGTTAATCTGGCACCAGTAAGCTCCAAGCTAATCCANAGTCATGCAATGTGCATTCTGTCGCACAATATTTTTCATTGACCATTATCTGAACCGTGTAAAAAAAGTTGAAGCGATTGATACGTTGTTGGCTTTCTGCTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14733#0 GCCTTTTCCCTCTTCCTCACCTGCCTGACCTGGCCTGGCCTGGCCCCCAATCAAAAACGA 60 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 GCGACCTCAACCGACGGAATCCCCAACCCCAACCCCCAAAACCAATCCGCCGCCGCGCTG 120 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 CCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCAC 180 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 GCCCGCCCGCCGACGAATCAGAGTTTGGATTTAATATTACAGGCGCAGCCATGTTCAACA 240 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 GGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTGGCCACGCTTGATAAGT 300 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 TAAATGAGACCCTTGACATGCTGGAGAAGAAGGAGAAAGTCTTAGAGAAAAAGGCAGCCG 360 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 CAGAACTGGAGAGGGCTAAGGAGTTCTCAAAAGCAAAGAATAAAAGAGCGGCTATCCAAT 420 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 CCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGCTAGGGAACTTCCAGTTGA 480 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 GAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTACGACAGAAACCGTTGATG 540 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 CTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGGCGACAAATATTGATGACG 600 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 TTGATAAGACTATGGATGAAATTAATGAACAGACTGAAAACATGAAACAAATACAAGATG 660 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 CTTTGTCAGCCCCTCTTGGAGCATCTGCTGATTTTGATGAGGACGAACTAGAGGCAGAAC 720 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 TGGAAGAACTGGAGGGAGCAGAATTGGAATCTCAGCTTCTCGAGCCTGTTGCAGCTCCAC 780 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 ------------------------------------------------------------ consensus_14733#0 CTGTGCATCCAGTGCAGGTCCCAGGCACCAGGATACCAACTCGCCCTGCTCCACAGAAAG 840 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 --------------------------------------------AATCCGCCGCCGCGCT 16 consensus_14733#0 CATCAGCTGAGGAGGATGAGCTTGCAGCCTTGCAAGCTGAAATGGCATTGTGATCAGGTT 900 consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 GCCTCGCCTCGCTCGTCGCTCCCACCACCACCACAAACCCGCGCCTCCTCCGCCGCCGCA 76 consensus_14733#0 CACAATGAAGAGACGAAATGTACAAATGATTGGCTGTGCTCTACGGAATTTCAACGAGTC 960 consensus_14733#2 -----------------------------------------------TGTNCAACGAGTC 13 consensus_14733#1 CGCCCGCCCGCCGACGAATCAGGTGAGCGCGCCGCCCTCCTCCCCCTCCCGCTATAGATC 136 * * ** consensus_14733#0 TAG-CTAC--AATATAATTTCCCATGT-GTGTACAATCTTT-GGGGATAGTCAGCAATCA 1015 consensus_14733#2 TATTCTAC--AATATAATTTCCCATGT-GTGTACNATCTTTTGGGGATAGTCAGCAATCG 70 consensus_14733#1 CGTAGCGCCCGATCTACCCGCCGCCGCCGCCCGGGCTGTCCCGCCGATACCTAAC--TCC 194 * ** ** ** * * * * * **** * * ** consensus_14733#0 AAGA-GAGATGC-TGCTTCAGTCCAGTACTCCAGTGTTCTGTTTTAGTGGCTTGGGGGGT 1073 consensus_14733#2 AAGATGAGATGC-TGCTGCAGTCCAGTACTCCAGTGTTGTGTTTTAGTGGCTTTGGGGGT 129 consensus_14733#1 GCGATTCGATGCGCGCGCCGATCCTTCGCCCTAGGTTTTGACCGCCGCGGCGGCGCGGGC 254 ** ***** ** * *** * * ** ** * *** * *** consensus_14733#0 G-----------TCGTCTGTTTTCCA-T--GCACATAATTTAAG--TTAATCTGGCA--- 1114 consensus_14733#2 GGGGGCCGGGTGTCGTCTGTTTTCCACT--GGACATAATTTAAG--TTAATCTGGCA--- 182 consensus_14733#1 TCTGCTCGGA--TCGCCGGTGGTCCGGCCGGAACATGAGTTTGGATTTAATATTACAGGC 312 *** * ** *** * **** * ** * ***** * ** consensus_14733#0 ----------C-AGTAAGCTCCAAGCTAATCCATAGTCATG---CAATG----TGCATTG 1156 consensus_14733#2 ----------CCAGTAAGCTCCAAGCTAATCCANAGTCATG---CAATG----TGCATT- 224 consensus_14733#1 GCAGCCATGTTCAACAGGCTCTTTGGTAAGCCCAAGGAGCAGGCCAATGCTAGTGCGTTG 372 * * **** * *** ** ** ***** *** ** consensus_14733#0 CTGTCGCACAATATTTTTCATT-GACCATGA----AGCCGTGTAAAACAAGTTGAAGCGA 1211 consensus_14733#2 CTGTCGCACAATATTTTTCATT-GACCATTATCTGAACCGTGTAAAAAAAGTTGAAGCGA 283 consensus_14733#1 GCCACGCTTGATAAGTTAAATGAGACCCTTGAC--ATGCTGGAGAAGAAGGAGAAAGTCT 430 *** *** ** ** **** * * * * ** * * *** consensus_14733#0 TTGATACGTTTGTTGGG---CTACTTATAAAGG--------------------------- 1241 consensus_14733#2 TTGATACGTT-GTTGGCTTTCTGCTTCAAAAAAAAAA----------------------- 319 consensus_14733#1 TAGAGAAAAAGGCAGCCGCAGAACTGGAGANGGCTAAGGAGTCTNAAAAAGCAAAGAATA 490 * ** * * * ** * consensus_14733#0 ------------------------------------------------------------ consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 AAAGAGCGGCTATCCAATCCTTGAAGAGAAAAAAGCTTTATGAACAACAAATTGAGCAGC 550 consensus_14733#0 ------------------------------------------------------------ consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 TAGGGAACTTCCAGTTGAGAATTCATGATCAGATGATCATGTTAGAAGCTGCAAAAGCTA 610 consensus_14733#0 ------------------------------------------------------------ consensus_14733#2 ------------------------------------------------------------ consensus_14733#1 CGACAGAAACCGTTGATGCTTTGAGGACTGGAGCTGCAGCTATGAAAGCAATGCAAAAGG 670 consensus_14733#0 ----------------------------------------------------------- consensus_14733#2 ----------------------------------------------------------- consensus_14733#1 CGACAAATATTGATGACGTTGATAAGACTATGGATGAAATTAATNAACAGAANGAAAAA 729 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||