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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1711 fasta sequence
[TCCTCTCAAAAAGAAAAAAAGCACCCCGCGCGCTCGAGTCTACGCTCCCATCGCCCTCCGCCTCGCCTCGCCGCAAATCTCACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGGCTCCACGCTCCCTTCCACTTTCGCCGCCGGCGCGCGGACGGACGGGCAGCAGATAGCCATGGCTGCCTCCGAGCAGCGCGT-CGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC-TTCCCCCT-GCCAGAC-ATGC-TCGA-GGCCCACAAAAAGTA-T-GG-T-GGAA-TGGGTACTTT-ATTAGTC-AATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGC-CAGAGACTTTTGTGAGTGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCT-CTTCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCC-TCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGAT-CGGTCCTAATGTCTCGATAT-CAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTGAAATTATGGAGAATG-CAGTTGTTATACACT-CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAATCAACAGTGCGATGGTGTATCTGGGGTTGTGTTTTGGATTATAGATCAT]
[+] EMBL AK070806 [TCCTCTCAAAAAGAAAAAAAGCACCCCGCGCGCTCGAGTCTACGCTCCCATCGCCCTCCGCCTCGCCTCGCCGCAAATCTCACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGGCTCCACGCTCCCTTCCACTTTCGCCGCCGGCGCGCGGACGGACGGGCAGCAGATAGCCATGGCTGCCTCCGAGCAGCGCGT CGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTCCCCCT GCCAGAC ATGC TCGA GGCCCACAAAAAGTA T GG T GGAA TGGGTACTTT ATTAGTC AATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGC CAGAGACTTTTGTGAGTGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCT CTTCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCC TCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGAT CGGTCCTAATGTCTCGATAT CAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTGAAATTATGGAGAATG CAGTTGTTATACACT CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCATCAACAGTGCGATGGTGTATCTGGGGTTGTGTTTTGGATTATAGATCAT]
[+] EMBL OSS3110A [ tnTCACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGGCTCCACGCTCCCTTCCACTTTCGCCGCCGG GCGCGGACGGACGGGCAGCAGATAGCCATGGCTGCCTCCGAGCAGCGCGTCCGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCAC ]
[+] EMBL CA756153 [ ACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGGCTCCACGCTCCCTTCCACTTTCGCCGCCGGCGCGCGGACGGACGGGCAGCAGATAGCCATGGCTGCCTCCGAGCAGCGCGT CGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTCCCCCT GCCAGAC ATGC TCGA GGCCCACAAAAAGTA T GG T GGAA TGGGTACTTT ATTAGTC AATAAGGTCTCCGCAGAGTCTGCANACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACANATGAACT ]
[+] EMBL AU065094 [ CCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTNCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTTAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACANTTCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCCCGAGCTTTCCCCTT GCCANAA AT C TCCA NGGCCA AAAAAGTA T GG T GGAA TGGGT ]
[+] EMBL AU064638 [ CCGACAGAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGCTTTCCCCCT GCCAGAC ATGC TCGA GGCCCACAAAAAGTA T GGTT GGAA TGGGTACTTT ATTAGTC AATAAGGT ]
[+] EMBL AU064649 [ CCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATNCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTNAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTNCCCCTNGCCAGACAATGC TNGAGGGCCCACAAAAAGTATT GG T GGAATTGGGTACTTT ATTAGTC AATAAag ]
[+] EMBL AU064805 [ CCGACCAAAGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTCCCCCT GCCAGAC ATGCTTCGA GGCCCACAAAAAGTA T GGTT GGAA TGGGTACTTTAATTAGTCAAATAAGGTTTCCG AGAGTNTGNAAACC ATTTNGTGAG TTGTA ]
[+] EMBL OSC586 [ ccanatanGGGACGAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCCCATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCTCGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCTCAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTACAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGATGTATGCTCGAGC TTCCCCCT GCCAGAC ATGC TCGA GGNCCACAAAAAGTA TNGG TGGGAA TGGGTACTTT ATTAGT AATAAGGT TCCG AGAGTNTG AAA CAATTTGntagtct ]
[+] EMBL CB000314 [ AAAAGTA T GG T GGAA TGGGTACTTT ATTAGTC CATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGC CAGAGACTTTTGTGAGTGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCT CTTCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCC TCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGAT CGGTCCTAATGTCTCGATAT CAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTGAAATTATGGAGAATG CAGTTGTTATACACT CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGGAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAAC ]
[+] EMBL CA998312 [ AAGTA T GG T GGAA TGGGTACTTT ATTAGTC AATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGTAGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGC CAGAGACTTTTGTGAGTGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCT CTTCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCT ]
[+] EMBL CA999183 [ AGTA T GG T GGAA TGGGGACTTT ATTAAT GATAACGTCTCCGCAGAGTCTGC AACCAATTTGGTGAGCTCGTAACTGACCCTGAAACGAATGAACTGTTACACTACACAGAAAAGCGCATAGACTTTTGTGAGTGATCTCATAAATTGTGGGGACTATATATTTACACCCAATATCTTTAATGCCATCGAGGATGTCTTAAAAGATAACAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCTGCTTCACTCGGCAACAAAAGCACTTCCATCAGACTATGTTAGGCTAGATCGAGATATTTTATCCCCTCTAACACGAAAGAATGAACTTTACTCATACCTGACTCTCGA ]
[+] EMBL AU094422 [ tcCCGCCATACCTCTCCTCATCTTTTAGCCNTCAGGAGATGNCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGAT CGGTCCTAATGTCTCGATAT CAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTGAAATTATGGAGAATG CAGTTGTTATACACT CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAA ]
[+] EMBL AU164340 [ CAAAGATCCGGNCCTAATGTCTCGATATACAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGNATGATGTTGAAATTATGGAGAATGNCAGTTGTTATACACTCCAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAA ]
[+] EMBL AU172896 [ ACT CAATTGTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAA ]
[+] EMBL AU182885 [ GTGGGGTGGAAGTCAACCGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACAATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAA ]
consensusID : consensus_14753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 795 fasta sequence
[AGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCCTCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGATCGGTCCTAATGTCTCGATATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTG-AAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACC-GTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACA-ATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCAAAAAAAAGGGAAAAA]
[-] EMBL CB656555 [AGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATACCTCTCCTCATCTTTTAGCCTCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATGTGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGATCGGTCCTAATGTCTCGATATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATTATTCTGGATGATGTTG AAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACC GTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCACA ATTCTTGGTGAAGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGTGCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTATAGCAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCAAAAAAAAGGGAAAAA]
[+] EMBL BI808806 [ CTGGATGATGTTGAAAATTATGGAGAAT CA TTGTTATACACTCAATTGTGGGGTGGAAGTCAACCGGTAGGAAAATGGTCACGTGTACAGGGTGAAGGTGACCATAAC CC AACTCGGTATCACACATTCTTGGTGAA CC TTGATGTTGAAGATGAAGTGGTTGTA TTAACAGCATTGTGCTCCCCCATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTTTCATAATTCATATTTTTATTCAATTCCCAATAAGGTCTGCGGACC ATATGTAGTTCCTCTCTTTTATTACCTCCTTGTAAGCTTCCCCTCAGATTGATATCATTAGTCTATGTTATAGCCAGCTTGAGATCTGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTACCAACATATGACCATTTTTTTTTATTGAACTAACGATTTTCATCCAAAAAAAAAA ]
consensusID : consensus_14753#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[TTTTTTTTTTTTCGGATAACTTTAGTAAAGTTGGTTTGGTACCATGAACCTGGCATGATAATGATAATGACTATCACACTTTTGTGAAGCTGTATTCTTCCCTTATCCCTTCTATATATCCCAGGAGGAACAGTGCACTGCCTAGAACACTTACATTTTGTTTTAATCCAGTTTAACAGCCATCAAAGCATGCAACAGAGAGAAACGAGGAAATGAGTAGACTAAACCTAGCTTACGCCTTGCTGGTTTTGTAGAAAATATATATATTTTTTGTTAGGGTTAACTTAATTAAGCGGCTATGTGTAGCAACACAATGTGGATTGTGGAAACCAGAATCATAGCCTCCACTTTATTTGTAACGTATAGTTACTGTTGGCACTAGTCATCCCTGGTTATAATTTTTGCCATTCAGGACTTGTTAGACTAAGTACAATAGAGCTGCCATTTATTTGTTGCAATACTGACCATCTTGTTGTAATTGTCAACAGAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGTAATAGTTGTTCCTAACTGCACTCTTTCTAACTTTGGAATTGTTAAGTAATAATGAGAGACTGCACCTATGCATAGAATGTCTTT]
[+] EMBL CA762133 [TTTTTTTTTTTTCGGATAACTTTAGTAAAGTTGGTTTGGTACCATGAACCTGGCATGATAATGATAATGACTATCACACTTTTGTGAAGCTGTATTCTTCCCTTATCCCTTCTATATATCCCAGGAGGAACAGTGCACTGCCTAGAACACTTACATTTTGTTTTAATCCAGTTTAACAGCCATCAAAGCATGCAACAGAGAGAAACGAGGAAATGAGTAGACTAAACCTAGCTTACGCCTTGCTGGTTTTGTAGAAAATATATATATTTTTTGTTAGGGTTAACTTAATTAAGCGGCTATGTGTAGCAACACAATGTGGATTGTGGAAACCAGAATCATAGCCTCCACTTTATTTGTAACGTATAGTTACTGTTGGCACTAGTCATCCCTGGTTATAATTTTTGCCATTCAGGACTTGTTAGACTAAGTACAATAGAGCTGCCATTTATTTGTTGCAATACTGACCATCTTGTTGTAATTGTCAACAGAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGTAATAGTTGTTCCTAACTGCACTCTTTCTAACTTTGGAATTGTTAAGTAATAATGAGAGACTGCACCTATGCATAGAATGTCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14753#0 TCCTCTCAAAAAGAAAAAAAGCACCCCGCGCGCTCGAGTCTACGCTCCCATCGCCCTCCG 60
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 CCTCGCCTCGCCGCAAATCTCACCACTCGCCACCGCCTCCCTCCCCCTGCCTCAGCGCGG 120
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 CTCCACGCTCCCTTCCACTTTCGCCGCCGGCGCGCGGACGGACGGGCAGCAGATAGCCAT 180
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 GGCTGCCTCCGAGCAGCGCGTCGTCGCCGTCATCATGGTCGGCGGGCCGACCAAAGGGAC 240
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 GAGGTTCCGGCCGCTGTCGCTGAACGTGCCGAAGCCGCTGTTCCCGCTCGCCGGCCAGCC 300
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 CATGGTGCACCACCCAATCTCCGCCTGCCGCCGCATCCCCAACCTGGCGCAGATATACCT 360
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 CGTCGGGTTCTACGAGGAGCGGGAGTTCGCGCTCTACGTCTCCTCGATCTCCAACGAGCT 420
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 CAGGGTCCCCGTCAGGTACCTGAGGGAGGATAAGCCCCATGGATCAGCTGGAGGGCTCTA 480
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 CAGCTTCAGGGATTACATCATGGAGGACAGTCCGTCGCACATTGTTTTGTTGAACTGTGA 540
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 TGTATGCTCGAGCTTCCCCCTGCCAGACATGCTCGAGGCCCACAAAAAGTATGGTGGAAT 600
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 GGGTACTTTATTAGTCAATAAGGTCTCCGCAGAGTCTGCAAACCAATTTGGTGAGCTCGT 660
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 AGCTGACCCTGAAACAAATGAACTGTTACACTACACAGAAAAGCCAGAGACTTTTGTGAG 720
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 TGATCTCATAAATTGTGGGGTCTATATATTTACACCCAATATCTTTAATGCCATCGAGGA 780
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 TGTCTTAAAACAGAAGAAAGACAGAGCTAACCTGCGCCGTGTCTCTAGTTTTGAAGCTCT 840
consensus_14753#1 ------------------------------------------------------------
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 TCACTCGGCAACAAAAGCACTTCCAGCAGACTATGTTAGGTTAGATCAAGATATTTTATC 900
consensus_14753#1 ------------------------------------------AGATCAAGATATTTTATC 18
consensus_14753#2 ------------------------------------------------------------
consensus_14753#0 CCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGAT 960
consensus_14753#1 CCCTCTAGCAGGAAAGAAGGAACTTTACACATACCAGACTCTCGACTTTTGGGAACAGAT 78
consensus_14753#2 ----------------------TTTTTTTTTTTTCGGAT----AACTTTAGTAAAGTTGG 34
*** * * ** ***** * **
consensus_14753#0 CAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATAC 1020
consensus_14753#1 CAAGACCCCAGGGATGTCTTTGAGATGCTCTGGCCTATATCTTTCTCAGTTCCGCCATAC 138
consensus_14753#2 TTTGGTACCATGAAC----CTGGCATGATAATGATAATGACTATCACACTTTTGTGAAGC 90
* *** * * ** *** * * ** ** ** ** ** * * *
consensus_14753#0 C-TCTCCTCATCTTTTAGCCTCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATG 1079
consensus_14753#1 C-TCTCCTCATCTTTTAGCCTCAGGAGATGGCAAAAGGAGTGCCACTATTATAGGTGATG 197
consensus_14753#2 TGTATTCTTCCCTTATCCCTTCTATATATCCCAGGAGGAACAGTGC-ACTGCCTAGAACA 149
* * ** *** * * ** * ** ** **** * * * *
consensus_14753#0 TGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGATCGGTCCTAATGTCTCGA 1139
consensus_14753#1 TGTACATTCATCCGTCTGCAAAGGTTCATCCAACAGCAAAGATCGGTCCTAATGTCTCGA 257
consensus_14753#2 CTTACATT--TTGTTTTAATCCAGTTTAACAGCCATCAAAGCATG----CAACAGAGAGA 203
****** * * * *** * * ** ***** * ** **
consensus_14753#0 TATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATT-ATTCTGGAT 1198
consensus_14753#1 TATCAGCAAATGCACGTATTGGAGCTGGAGCCAGGCTTATTCATTGCATT-ATTCTGGAT 316
consensus_14753#2 AACGAGGAAATGAGTAGACTAAACCTAGCTTACGCCTTGCTGGTTTTGTAGAAAATATAT 263
* ** ***** * * * ** * * *** * ** * * * **
consensus_14753#0 GATGTTGAAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACC 1258
consensus_14753#1 GATGTTGAAATTATGGAGAATGCAGTTGTTATACACTCAATTGTGGGGTGGAAGTCAACC 376
consensus_14753#2 ATATTTTTTGTTAGGGTTAACTTAATTAAGCGGCTATGTGTAGCAACACA-ATGTGGATT 322
** *** ** ** * ** * * * * * ** *
consensus_14753#0 GTAGGAAA-ATGGTCAC-GTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCA 1316
consensus_14753#1 GTAGGAAA-ATGGTCAC-GTGTACAGGGTGAAGGTGACCATAACGCCAAACTCGGTATCA 434
consensus_14753#2 GTGGAAACCAGAATCATAGCCTCCACTTTATTTGTAAC-GTATAGTTACTGTTGGCACTA 381
** * ** * *** * * ** * ** ** ** * * * ** * *
consensus_14753#0 -CAATTCTTGGTGA-AGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGT 1374
consensus_14753#1 -CAATTCTTGGTGA-AGCCGTTGATGTTGAAGATGAAGTGGTTGTAGTTAACAGCATTGT 492
consensus_14753#2 GTCATCCCTGGTTATAATTTTTGCCATTCAGGAC----TTGTTAGACTAAGTACAATAGA 437
** * **** * * *** ** * ** * *** * * * * ** *
consensus_14753#0 GCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTT 1434
consensus_14753#1 GCTCCCCAATAAAACTCTCAATGTCAGTGTGCAAGAGGAGATCATATTATGATAGTCCTT 552
consensus_14753#2 GCTGCCATTTATTTGTTGCAATACTGACCATCTTGTTGTAAT--TGTCAACAGAGCACTT 495
*** ** ** * **** * * * ** * * * * ** ***
consensus_14753#0 TCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTC 1494
consensus_14753#1 TCATAATTCATATTTTTATTCAATTCCAAATAAGGTCTGCGGACCAATATGTAGTTCCTC 612
consensus_14753#2 CCAGCAGAC-TATGTTAGGTTAGATCAAGATATTTTATCCCCTCTAGCAGGAAAGAAGGA 554
** * * *** ** * * ** * *** * * * * * * * *
consensus_14753#0 TCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTA-TAG 1553
consensus_14753#1 TCTTTTATTACCTCCTTGTAAGCTTCCCCCCAGATTGATATCATTAGTCTATGTTA-TAG 671
consensus_14753#2 ACTTTA--CACATACCAGACTCTCGACTTTTGGGAACAGATCAAGACCCCAGGGTAATAG 612
**** ** * * * * * * **** * * * * ** ***
consensus_14753#0 CAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTA 1613
consensus_14753#1 CAAGCTTGAGATATGGACAGTGTAATTTTTTAGCGTAAAATTTACTGATGTAAAAATGTA 731
consensus_14753#2 TTGTTCCTAACTGCACTCTTTCTAACTTTGGAAT-TGTTAAGTAATAATGAGAGACTGCA 671
* * * * *** *** * * * ** * *** * * ** *
consensus_14753#0 CAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAAAATCAACAGTGCG 1673
consensus_14753#1 CAAACATATGACAATTTTTTTTTATTGAACTAACGATTTTCATCAAGCAAAAAAAAGGGA 791
consensus_14753#2 CCTATGCAT-AGAATGTCTTT--------------------------------------- 691
* * ** * *** * ***
consensus_14753#0 ATGGTGTATCTGGGGTTGTGTTTTGGATTATAGATCAT 1711
consensus_14753#1 AAAA---------------------------------- 795
consensus_14753#2 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||