These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 2004 fasta sequence [AGATGATGGCGGCGGCAATGGGGTCGCCATGGCTGCGCATCAGGCTGCTCCCGGAGGTGCCGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGC-CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGGTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAAGCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTCCAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGTGGCTGAGCTTTTGAAGGATGGCATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA-GGAGCA-AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT-AATACT-CCACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT-TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGATGCTGCTTGTCTTTTTCAGTTGCTGAATCCAAATATTTCTGAGAACAGTAGAACATAGCCTGAATTCTCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK099931 [AGATGATGGCGGCGGCAATGGGGTCGCCATGGCTGCGCATCAGGCTGCTCCCGGAGGTGCCGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGC CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGGTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAAGCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTCCAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGCGGCTGAGCTTTTGAAGGATGGCATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGATGCTGCTT ] [+] EMBL C27100 [ TGGCGGCGGCAATGGGGTCGCCATGGCTGCGCATCAGGCTGCTCTCGANGGTGCNGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTACGCNGCTCCNNCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTNCGCTTCG GCNCGTCGCCGACGGGCAACCTCCACGTCGGNGGCGCCCGAACCG GCTCTTNAACTACCTCTTCGCGCGGTCCAAGGGGGGAAAGTTCGTNCTCCGNATCGAGGACACCGACCTCGAGAGGTTCACCAAGAAGTNCGAGGAGGCCGTGCTCAGTAACCTCG ] [+] EMBL CB656780 [ GGTCGCCATGGCTGCGCATCAGGCTGCTCCCGGAGGTGCCGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGC CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGGTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAA ] [+] EMBL CB640860 [ CAGGCTGCTCCCGGAGGTGCCGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCGCCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGC CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGTCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGC ] [+] EMBL CB654992 [ gCGCCTCCGCCTCGGCGTCACCGGACGGCCCCTGCGGCCCGGTGCGGGTCCGCTTCGCGC CGTCGCCGACGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGTCCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGAAGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTCCCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGGTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCGAACACATTACGGCAGGCTCTTATTTATAAAGC ] [-] EMBL CB618155 [ ATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTCCAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGTGGCTGAGCTTTTGAAGGATGGCATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCGCTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCCATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCCCTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAGAGGTTACGAGGTGATGCTGCTTGTCTTTTT ] [-] EMBL CB618224 [ TGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTCCAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGTGGCTGAGCTTTTGAAGGATGGCATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCGCTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCCATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCCCTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAGAGGTTACGAGGTGATGCTGCTTGTCTTTTT ] [-] EMBL CB654993 [ ATCGATTTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTGGTATCCCCTCCATGCTACATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCCCTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTCCAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGGGGTGATGCTGCTTGTCTTTT ] [-] EMBL CB683559 [ GATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTTTGAGGTTGCATCAGGACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCCCTTAAAAGAAAGGGAAAGTCCCTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCCGACATGGGCGGCCCCGTAGTCCTCATACACAAAGCCGGCCCCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCCGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGGGAGTTTTTGTTTTCTGT AATACT CCCCTATAAAGCATAGGATATGTTCCATTTTACTCCCCCTTTCTCCAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTCCCTGGAAAGGCTCCT ] [-] EMBL CB636200 [ AAGCTTTCTGAGGTTGCATCAGGACTCATTTCTGCTTATGAAAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGGTTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTTTATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGTAGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAATCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGAAAAAGCTT TCTTTTT ] [-] EMBL CB618156 [ GAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTCTATGCCGGTCCGTGTAATGCTGAATGGCAAGCTTCATGGGCCGGCCATGGGCGGCACCGTAGTCCTCATTCACAAAGCCGGCACCTGTGGAGCGGTCACTCTGCAATCCGGTTTCGTAAATCTCGTCGCGAGGTTCAGAATCCTGAAGGAGGGGGAGTGGGAGTCACTGGTACA GGAGCA AGAGTCCCCAGCTGAATCTGCCGTTCCTGCTTCTCCATAGGCCGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCACTATAAAGCCTCGGATATGTTCCATTTTGCTGCCCACTTCCACAGTGGGGAGGAACCGATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATCTTGCTTATCTGTTCTGTAATCGCCGATTTGAATTGGATCGGATGGCAGAGGTTACGAGGTGATGCCGCTTGTCTTTTT ] [+] EMBL BI794982 [ CGACGAGAGGTTCAGAATCCTGAAGGA GTGGAGTGGGAGTCACTGGTACACGGAGCACAGAGTCCCCCGCTGAAACTGCCGTTCCTGCTTCTCCATAGGCTGCAAGATTCAGATCCATCAGGGAGAGTTTTTGTTTTCTGTGAATACTCCCACTATAAAGCATAGGATATGTTCCCTTTTACTACCCCTTTCTACCGTTGTGAGGAAACTATAGTTTCGGTGTTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGTCAGAGGTTACGAGGTGATGC ] [+] EMBL CA765755 [ TGGTACA GGAGCA AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAATCAGGGAGAGTTTTTGTTTTCTGT AATACT CCACTATAAAGCATAGGATATGTTCCATTTTACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGT TTTCTGTAGTTAATAAAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGATGCTGCTTGTCTTTTTCAGTTGCTGAATCCAAATATTTCTGAGAACAGTAGAACATAGCCTGAATTCTCTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU108767 [ AAGCGGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTACGAGGTGATGCTGCTTGTCTTTTTNAGTTGNTGAATCCAAATATTTCTGAGAACAGTAGAACATAaaaaaaa ] consensusID : consensus_14758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 813 fasta sequence [TGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTG] [+] EMBL CB618223 [TGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTG] [+] EMBL CB618185 [TGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTG] [+] EMBL CB618154 [TGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCTTCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAGTTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGTCTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCCCTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTGATATACTATAAGGTTTGTAGCAATAAGGTTTGTAGCAACAAAATTATAACCATATGAAATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTATACTAATTGTTGGTATATTTTAGAAGGTGAATCTTAAAAACCAATCTAGTACTGGATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAGAATGTGTCCATAACTCTATATGACCAACA ] consensusID : consensus_14758#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence [CAGCCCTAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGTTTTATAAAGGTCAGTTGGAACTTATACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAAGCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATC] [+] EMBL CB683090 [CAGCCCTAGCGCAATTCGATGTACAAACAGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGGAACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCAAGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACACTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTGAGTTTTATAAAGGTCAGTTGGAACTTATACACGCTTGGTGATTTCGTGATTATGAGAAGCAATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCTCATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAAGCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGAAGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTATTTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAATGAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGTGGAGCAGTCTTTGATGCTGTAAAATTAAAATGGATGAATGGACAACATCTAAGATCATTTCCCCCTGATGTACTCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14758#0 AGATGATGGCGGCGGCAATGGGGTCGCCATGGCTGCGCATCAGGCTGCTCCCGGAGGTGC 60 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CGCCGCGCCTCCTGCGGCCCCACCTCCGCCGGACCCTCTCCGTCCGCGCCTCCGCCTCCG 120 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CCTCGGCGTCACCGGACGGCGCCGGCGGCCCGGTGCGGGTCCGCTTCGCGCCGTCGCCGA 180 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CGGGCAACCTCCACGTCGGCGGCGCCCGCACCGCGCTCTTCAACTACCTCTTCGCGCGGT 240 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CCAAGGGGGGCAAGTTCGTGCTCCGCATCGAGGACACCGACCTCGAGAGGTCCACCAAGA 300 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 AGTCCGAGGAGGCCGTGCTCAGTGACCTCGCCTGGCTCGGCCTTGACTGGGACGAAGGTC 360 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CCGATGTTGGTGGGGAATTTGGGCCGTATCGCCAGTCCGAGCGCAATTCGATGTACAAAC 420 consensus_14758#2 --------------------------------CAGCCCTAGCGCAATTCGATGTACAAAC 28 consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 AGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGG 480 consensus_14758#2 AGTATGCCGAGAAGCTGATGGAGTCTGGTGCAGTCTATCAGTGCTTTTGCTCCAGTGAGG 88 consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 AACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCA 540 consensus_14758#2 AACTTGAACAGATGAAAGAAACTGCAAAGCAGATGCAACTTCCACCTGTATACATGGGCA 148 consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 AGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACA 600 consensus_14758#2 AGTGGGGGACTGCTTCAGATGCAGAAATACAACAGGAGTTAGAGAAGGGGACACCTTACA 208 consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTG 660 consensus_14758#2 CTTACCGTTTCCGTGTACCGAAGGAAGGGTCGTTGAAAATTAATGACCTTATTCGTGGTG 268 consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 AG----------GTCAGTTGGAACTTAGACACGCTTGGTGATTTCGTGATTATGAGAAGC 710 consensus_14758#2 AGTTTTATAAAGGTCAGTTGGAACTTATACACGCTTGGTGATTTCGTGATTATGAGAAGC 328 consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 AATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCT 770 consensus_14758#2 AATGGCCAGCCAGTGTATAACTTCTGTGTCACAGTTGATGATGCTACCATGCGCATCTCT 388 consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAA 830 consensus_14758#2 CATGTTATCAGAGCTGAAGAACATCTGCCAAACACATTACGGCAGGCTCTTATTTATAAA 448 consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 GCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGA 890 consensus_14758#2 GCACTTGGATTTCCAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGA 508 consensus_14758#1 -----TGGATCTCTAATGCCTTCGTTTGCTCATGTATCACTTATTCTAGCTCCTGATAGA 55 ***** ** ********************************************** consensus_14758#0 AGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTAT 950 consensus_14758#2 AGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTAT 568 consensus_14758#1 AGTAAACTGTCTAAACGTCATGGGGCTACTTCTGTGGGACAGTACAAAGAGATGGGCTAT 115 ************************************************************ consensus_14758#0 TTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAAT 1010 consensus_14758#2 TTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAAT 628 consensus_14758#1 TTGCCTCAGGCAATGGTAAATTATTTGGCACTTCTTGGTTGGGGTGATGGTACTGAAAAT 175 ************************************************************ consensus_14758#0 GAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGT 1070 consensus_14758#2 GAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGT 688 consensus_14758#1 GAGTTCTTCACCATTGATGACCTAGTGGAAAAATTCACTATAAATCGTGTCAACAAAAGT 235 ************************************************************ consensus_14758#0 GGAGCAGTCTTTGATGCTGTAAAATTAAAATG-GATGAATGGACAACATCTAAGATCATT 1129 consensus_14758#2 GGAGCAGTCTTTGATGCTGTAAAATTAAAATG-GATGAATGGACAACATCTAAGATCATT 747 consensus_14758#1 GGAGCAGTCTTTGATGCTGTAAAATTAAAGTAAGATCATTTTTTTTTTTGCCAATCTCCT 295 ***************************** * *** * * * * * consensus_14758#0 TCCCCCTGA--TGTACTCATCAAGAGTTTTGAGGATAGATGGAAGGACACAGGCATTCTC 1187 consensus_14758#2 TCCCCCTGA--TGTACTCATC--------------------------------------- 766 consensus_14758#1 TCTGGTTGAGTTATCTTCATAGAATTTGTCAGTATTCTCTAATTACTCGTAATATCTCAG 355 ** *** * * **** consensus_14758#0 CAGGAGTCTGAAAGTGGTTTTGCTAAAGAAGTGGCTGAGCTTTTGAAGGATGGCATCGAT 1247 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 TTGCAGTACTATAATTAGTTGAACTGGAGCTTGCTTCCACTTATTGTTATGTTTCTTAGT 415 consensus_14758#0 TTGATCACTGATGCTGACGCAGCCCTTTCAAACCTGTTGTCGTATCCCCTCCA-TGCTAC 1306 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 CTGATACCAGGCATTATTTCAATTATAAGGGAACCAGTGAAAAGTCATTGTCACTACTCC 475 consensus_14758#0 ATTAAGCAGTGATGAAGCTAAATCTGTGGTGCAAGACAAGCTTTCTGAGGTTGCATCAGG 1366 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 CTCTATCGCACGTCAAACACGTCACGATCTCCAAAAATAATCTTTTGCTTATAATTTCTG 535 consensus_14758#0 ACTCATTTCTGCTTATGATAGCGGTGAACTTTGTCAAGCACTAGCTGAGGGCCGTGATGG 1426 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ATATACTATAAGGTTTG-TAGCAATAAGGTTTGT-AGCAACAAAATTATAACCATATGAA 593 consensus_14758#0 TTGGCAGAAGTGGGTGAAAATTTTTGGCAAATCACTTAAAAGAAAGGGAAAGTCACTCTT 1486 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ATTAAATTCAAATGTCAATCCAATGATAATATTCACTAATAAAATTTTAATTCATATTAT 653 consensus_14758#0 TATGCCGCTCCGTGTACTGCTGACTGGCAAGCTTCATGGGCCTGACATGGGCGGCACCGT 1546 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ACTAATTGTTGGTATATT-TTAGAAGGTGAATCTTAAAAACCAATC-----TAGTACTGG 707 consensus_14758#0 AGTCCTCATACACAAAGCCGGCACCTGTGGAGCGGTCACTCAGCAATCCGGTTTCGTAAA 1606 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ATATGACACATGCTAGTACTACAAATCCGGACATATATCTGTCCAGATTCGTTGTACTAG 767 consensus_14758#0 TCTCGACGAGAGGTTCAGAATCCTGAAGGAGGTGGAGTGGGAGTCACTGGTACAGGAGCA 1666 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 AATGTGTCCATAACTCTATATGACCAACAAAGTTAAATGTACAGTG-------------- 813 consensus_14758#0 AGAGTCCCCAGCTGAAACTGCCGTTCCTGCTTCTCGATAGGCTGCAAGATTCAGATCAAT 1726 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CAGGGAGAGTTTTTGTTTTCTGTAATACTCCACTATAAAGCATAGGATATGTTCCATTTT 1786 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 ACTACCCATTTCTACAGTTGTGAGGAAACTATAGTTTCGGTTTTCTGTAGTTAATAAAGC 1846 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 GGAATTTTGCTTAGCTGTTCTGTAATTGTCGATTTGAATTGGATTGGATGGCAAAGGTTA 1906 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 CGAGGTGATGCTGCTTGTCTTTTTCAGTTGCTGAATCCAAATATTTCTGAGAACAGTAGA 1966 consensus_14758#2 ------------------------------------------------------------ consensus_14758#1 ------------------------------------------------------------ consensus_14758#0 ACATAGCCTGAATTCTCTAAAAAAAAAAAAAAAAAAAA 2004 consensus_14758#2 -------------------------------------- consensus_14758#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||