These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1174 fasta sequence [GGCTTGGGTTGTGGTTGATAGCAAGATAAACCCAGACCGCATTGAGTGCTATGCTGAGAGGACTGCAAAAGGCAATGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA-GGA-GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA-TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA-TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT-ATGAT-G-CCAAAACTATTATTGGAGGCACAAATAGC-TTGTGGACCCT-GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT-GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA-CCGGTTAACCTGAGTGCTTGTTTAC-AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA-CA-AGATGACAATATGTTTGTGCTCTAAAAAAAAAATCCATGAATACTGATTGCGGAATCAAAAAAAAAAAA] [+] EMBL CF310719 [GGCTTGGGTTGTGGTTGATAGCAAGATAAACCCAGACCGCATTGAGTGCTATGCTGAGAGGACTGCAAAAGGCAATGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA GGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAAC ] [+] EMBL OSR1911A [ TGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGNAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGNATTGCATGATACATCCCTCAGAATGGCTGCNAAAGGTGTAATTAAGGAAGTTGTGGGCTTGGAAGNATCACGGTCTTTCCTCTATAAGAGATTACGGA GGN GGGTCTCTGAGGATGTTCTTGCAAAgg ] [+] EMBL OSR1958A [ TGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGAGGGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCCAGGAATGGTATTCAGCTTCACATGCAGCTTAATTGGGATTATGNCGGTGCT ] [+] EMBL OSR25581A [ TGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGNTCTTTCTTCTATAAGAGATTACGGA GGAGGGATCTCTGAGGATG ] [-] EMBL CB629345 [ CAAGTTCAGGTCAGAGGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACTCGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA GGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTC ] [+] EMBL AK059261 [ AAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA GGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA AGATGACAATATGTTTGTGCTCTAAAAAAAAAA ] [-] EMBL CB634342 [ ACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAAGAGATTACGGA GGA GGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGGGAACACA CA AGATGACAATATGTTTGTGCTCTA ] [+] EMBL BP184574 [ AGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTT ACACA CA Aa ] [-] EMBL CB642142 [ TAGAGCTGTAGCAGGTGAGCAGTTTTCCCCCCACCCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAA TGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTCCAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGA TTTGCAAGCCCTGCCCCAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCCCAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTTTGATGATTCATGATCCCGTCAGTTGGCAAGAACC CCGGTTACCCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATTTACTATCATCTGTTAGACGCTGTAATTAGTGAGTTTCCGCGGATCCCCAGTATACGGTTGAGCTGTTGATTCAATTTTGGCCCCGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTACCCCC CA AGATGCCAATATGT ] [+] EMBL BI806157 [ GAT GATAA CCTG AAACTAC AGGATTATA TC ATATC TAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTTGCAAG CCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CC AAACTATTATTGGAGGCAC AATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AATGGTCCTTTATGAC ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA Aaaaaaaaa ] [-] EMBL CF306370 [ AGCTCAGA TTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA AGATGACAATATGTTTGTGCTCTACTGCTATTGTCCATGAATACTGATTGCGGAATCAAAAAAAAAAAA] [+] EMBL BI812060 [ AGATGGATCCCTCTAGAAGAGCTC ACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGATCG CCCAAACTATTATTGGAGCCAC AATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACCATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCCCAGTATACGGTTGAGCTGTTGATTCAATTTTGGACCCGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACACCACAGATGACCATATGTTTGTGCTCTAAAAAAAAAA ] [+] EMBL CB685486 [ CTCCCCTTGATGAAGAAATCAGGAAGGTCCTTGGTTGAATCAT ATGAT G CCAAAACTATTATTGGAGGCACAAATCCC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA AGATGACAATATGTTTGTG ] [+] EMBL BI803380 [ TGAAGAAATCAGGAAGCTCCTTGGTTGAATCAT ATGAT CCCAAACTATTATTGGAGCCACAAATAGC TTGTGGACCCT GTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGTGGCAAGTCTGATGATTCATGATACCGTCAGTT GCAAGAACACCCGGTTAACCTGAGTGCTTGTTTACAAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA CA AGATGACAATATGTTTGTGCTCTACTGCTATTGTCCATGAATCCTGATTGCGGAATCAAAAAAAAAA ] [+] EMBL BI802505 [ TTGGTTGAATCATGATGATCGCCCTGGACTATTATTGGAGGCACAGATAGCTTTGTGGACCCTGGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT GCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACA CCGGTTAACCTGAGTGCTTGTTTAC AAATGGTCCTTTATGAC ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACCCGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACA AA A ] consensusID : consensus_14760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 908 fasta sequence [GGACGAGACAAGGGGGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAGGAGATTACGGAGGAGGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCACAAATAGCTTGTGGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGGTAGTTCTGNCAGATGAAAGTGCAAGTCTGATGATTCATGATACCCGTCAGNTGGCAAGAACACCGGNTAACCTGAGTGCTTGGTTACAAATGGTCCNTTATGACAATCGGTGGTTCGCGCTAGNTCCGGGATCTACTATCATCTGGTANACGCTGGAATTAGNGAGTCTNCGCGGGTNCACAGGATACGGGTGGAGCTGGTGATTCAATTTTGGCACGAATAAATGATTTTGGAGGCATAAAAGCGCCTGGATG] [+] EMBL CA764193 [GGACGAGACAAGGGGGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGCTCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCATGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGAATCACGATCTTTCTTCTATAGGAGATTACGGAGGAGGATCTCTGAGGATGTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCACAAATAGCTTGTGGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGGTAGTTCTGNCAGATGAAAGTGCAAGTCTGATGATTCATGATACCCGTCAGNTGGCAAGAACACCGGNTAACCTGAGTGCTTGGTTACAAATGGTCCNTTATGACAATCGGTGGTTCGCGCTAGNTCCGGGATCTACTATCATCTGGTANACGCTGGAATTAGNGAGTCTNCGCGGGTNCACAGGATACGGGTGGAGCTGGTGATTCAATTTTGGCACGAATAAATGATTTTGGAGGCATAAAAGCGCCTGGATG] consensusID : consensus_14760#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [GTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCCCAAATAGCTTGTGGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGTGCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACACCGGTTAACCTGAGTGCTTGTTTACAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATTTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCCCAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCAAAAAAAAAAAAAAAAA] [-] EMBL CA759584 [GTTCTTGCAAAAGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAAGAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTGGATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATCCCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCTTTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAGGAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCCCAAATAGCTTGTGGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGTGCAAGTCTGATGATTCATGATACCGTCAGTTGGCAAGAACACCGGTTAACCTGAGTGCTTGTTTACAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATTTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCCCAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCAAAAAAAAAAAAAAAAA] consensusID : consensus_14760#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGGTTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACACAAGATGACAATATGTTTGTGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF332883 [ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATCATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTGAGCTGTTGATTCAATTTTGGACACGAATAATATGGTTTTGTAGGCATAAATGCGTCTGTATGTGAAATAAATTGTCTGTTGAGTTAACACACAAGATGACAATATGTTTGTGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14760#1 ------------------------------------------------------------ consensus_14760#2 ------------------------------------------------------------ consensus_14760#0 GGCTTGGGTTGTGGTTGATAGCAAGATAAACCCAGACCGCATTGAGTGCTATGCTGAGAG 60 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 ------------------------------------------------------------ consensus_14760#2 ------------------------------------------------------------ consensus_14760#0 GACTGCAAAAGGCAATGTTCTGGAACCGCAAGGGTTAATTGAGATCAAGTTCAGGTCAGA 120 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 ----------------------------------------------GGACGAGACAAGGG 14 consensus_14760#2 ------------------------------------------------------------ consensus_14760#0 GGAACTCCAGGATTGCATGAGTCGGCTTGACCCAACATTAATTGATCTGAAAGCAAAACT 180 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 GGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGC 74 consensus_14760#2 ------------------------------------------------------------ consensus_14760#0 CGAAGTAGCAAATAAAAATGGAAGTGCTGACACAAAATCGCTTCAAGAAAATATAGAAGC 240 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 TCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCA 134 consensus_14760#2 ------------------------------------------------------------ consensus_14760#0 TCGAACAAAACAGTTGATGCCTCTATATACTCAGATTGCGATACGGTTTGCTGAATTGCA 300 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 TGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGA 194 consensus_14760#2 ------------------------------------------------------------ consensus_14760#0 TGATACATCCCTCAGAATGGCTGCGAAAGGTGTGATTAAGAAAGTTGTGGACTGGGAAGA 360 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 ATCACGATCTTTCTTCTATAGGAGATTACGGAGGAGGATCTCTGAGGATGTTCTTGCAAA 254 consensus_14760#2 -------------------------------------------------GTTCTTGCAAA 11 consensus_14760#0 ATCACGATCTTTCTTCTATAAGAGATTACGGAGGAGGATCTCTGAGGATGTTCTTGCAAA 420 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 AGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAA 314 consensus_14760#2 AGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAA 71 consensus_14760#0 AGAAATTAGAGCTGTAGCAGGTGAGCAGTTTTCCCACCAACCAGCAATCGAGCTGATCAA 480 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 GAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTG 374 consensus_14760#2 GAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTG 131 consensus_14760#0 GAAATGGTATTCAGCTTCACATGCAGCTGAATGGGATGATGACGATGCTTTTGTTGCTTG 540 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 GATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATC 434 consensus_14760#2 GATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATC 191 consensus_14760#0 GATGGATAACCCTGAAAACTACAAGGATTATATTCAATATCTTAAGGCTCAAAGAGTATC 600 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 CCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCT 494 consensus_14760#2 CCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCT 251 consensus_14760#0 CCAATCCCTCTCAAGTCTTTCAGATTCCAGCTCAGATTTGCAAGCCCTGCCACAGGGTCT 660 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 TTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAG 554 consensus_14760#2 TTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAG 311 consensus_14760#0 TTCCATGTTACTAGATAAGATGGATCCCTCTAGAAGAGCTCAACTTGTTGAAGAAATCAG 720 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 GAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCACAAATAGCTTGT 614 consensus_14760#2 GAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCCCAAATAGCTTGT 371 consensus_14760#0 GAAGGTCCTTGGTTGAATCATATGATGCCAAAACTATTATTGGAGGCACAAATAGCTTGT 780 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 GGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGGTAGTTCTGNCAGATGAAAGT 674 consensus_14760#2 GGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT 431 consensus_14760#0 GGACCCTGTCGGATTGTTGGTGAGTGTATATTGGATTTGTTAGTTCTGCCAGATGAAAGT 840 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 GCAAGTCTGATGATTCATGATACCCGTCAGNTGGCAAGAACACCGGNTAACCTGAGTGCT 734 consensus_14760#2 GCAAGTCTGATGATTCATGATACC-GTCAGTTGGCAAGAACACCGGTTAACCTGAGTGCT 490 consensus_14760#0 GCAAGTCTGATGATTCATGATACC-GTCAGTTGGCAAGAACACCGGTTAACCTGAGTGCT 899 consensus_14760#3 ------------------------------------------------------------ consensus_14760#1 TGGTTACAAATGGTCCNTTATGACAATCGGTGGTTCGCGCTAGNTCCGGGATCTACTATC 794 consensus_14760#2 TGTTTACAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATC 550 consensus_14760#0 TGTTTACAAATGGTCCTTTATGACAATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATC 959 consensus_14760#3 -------------------------ATCGTTGTTTCGCGCTAGTTCCGTGATCTACTATC 35 **** ** ********** **** *********** consensus_14760#1 ATCTGGTANACGCTGGAATTAGNGAGTCTNCGCGGGTNCACAGGATACGGGTGGAGCTGG 854 consensus_14760#2 ATTTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCCCAGTATACGGTTG-AGCTGT 609 consensus_14760#0 ATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTG-AGCTGT 1018 consensus_14760#3 ATCTGTTAGACGCTGTAATTAGTGAGTCTCCGCGGATCCACAGTATACGGTTG-AGCTGT 94 ** ** ** ****** ****** ****** ***** * * *** ****** ** ***** consensus_14760#1 TGATTCAATTTTGG-CACGAATAA-ATGATTTTGGAGGCATAAAAGCGCCTGGATG---- 908 consensus_14760#2 TGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCAAAAAAAAAAAAAAAAA---- 665 consensus_14760#0 TGATTCAATTTTGGACACGAATAATATGATTTTGTAGGCATAAATGCGTCTGTATGTGAA 1078 consensus_14760#3 TGATTCAATTTTGGACACGAATAATATGGTTTTGTAGGCATAAATGCGTCTGTATGTGAA 154 ************** ********* *** ***** ***** *** * consensus_14760#1 ------------------------------------------------------------ consensus_14760#2 ------------------------------------------------------------ consensus_14760#0 ATAAATTGTCTGTTGAGTTAACACACAAGATGACAATATGTTTGTGCTCTAAAAAAAAAA 1138 consensus_14760#3 ATAAATTGTCTGTTGAGTTAACACACAAGATGACAATATGTTTGTGCTCTAAAAAAAAAA 214 consensus_14760#1 ------------------------------------ consensus_14760#2 ------------------------------------ consensus_14760#0 TCCATGAATACTGATTGCGGAATCAAAAAAAAAAAA 1174 consensus_14760#3 AAAAAAAAAAAAAAAAAAA----------------- 233 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||