These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14770#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2000 fasta sequence [GCAGGAGGATGGAGTAGTAGAATGGATGGATGGATGGATGGATGAGGGTAGCTAGCTAATTGGCAAATTAAACAAAGAAGAAGAGGAAAGGAAGGAAGGAAGCGAAGGATCGATGATGCCGGCCGGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG-CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC-TGCCGATGCGAAGCGCGC-TCAACATCGCGCAGGTGGGC-ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTACAGCCTCGCCCT-GGAGACGGCCAACGAAGTC-ACCT-GGATC-AACTGCCGCCTGCGCCGGCGC-AAGGGCAAGCACCCTGGGC-GGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGCACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTCGCCACCACCAGCGGCCGCAACGCCTCCAGCTACCTCACCTTCGGCGCCAACCCGGCCGTCCAGGCTCCCGGCACCATGGAGACGCCGCTCCTGTACAGGGACGTCGCGTACGGCGCCCATGTCACCGGCATCCTCGTCGGCGGTCAACCACTGGACATCCCGCCCGAGGTGTGGGACGAGGGCCCCCTGGGGAACGACAACCCAGAAGCCGGCATCATCCTCGACACCGGCACCTCCATAACCTACCTCGTGTCGGCGGTGTACGACCCGGTGACGGCGGCGCTGGACAGCCACCTGGCGCACCTGCCTAAGGCCGAAATCAAGGGCTTCGAGTACTGCTACAACTGGACCTTCGCCGGTGACGGGGTGGACCCGGCTCACAACGTGACGATACCCAGTTTCAGCATCGAGATGGCCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCGTCCCGGGGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGCTCATGCAGGAGCACATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGGACAAATGCATCAACCATCAGCAGCTCAACAGGCACCACAAGAAGGCCTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGCACGCACGCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCGCATATATATATATATATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCATTATTAAGCTCGCATCGCATGTAATACTATTACTTATATATGTAATATATAATTAATCATATATATACATGTACTCTGCTCTACTACTACTACTACAGAAGTCTATATATACATTTGCTTGTCCTTCTATATAATATAGGGA] [+] EMBL AK121242 [GCAGGAGGATGGAGTAGTAGAATGGATGGATGGATGGATGGATGAGGGTAGCTAGCTAATTGGCAAATTAAACAAAGAAGAAGAGGAAAGGAAGGAAGGAAGCGAAGGATCGATGATGCCGGCCGGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAGCGCGC TCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTACAGCCTCGCCCT GGAGACGGCCAACGAAGTC ACCT GGATC AACTGCCGCCTGCGCCGGCGC AAGGGCAAGCACCCTGGGC GGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGCACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTCGCCACCACCAGCGGCCGCAACGCCTCCAGCTACCTCACCTTCGGCGCCAACCCGGCCGTCCAGGCTCCCGGCACCATGGAGACGCCGCTCCTGTACAGGGACGTCGCGTACGGCGCCCATGTCACCGGCATCCTCGTCGGCGGTCAACCACTGGACATCCCGCCCGAGGTGTGGGACGAGGGCCCCCTGGGGAACGACAACCCAGAAGCCGGCATCATCCTCGACACCGGCACCTCCATAACCTACCTCGTGTCGGCGGTGTACGACCCGGTGACGGCGGCGCTGGACAGCCACCTGGCGCACCTGCCTAAGGCCGAAATCAAGGGCTTCGAGTACTGCTACAACTGGACCTTCGCCGGTGACGGGGTGGACCCGGCTCACAACGTGACGATACCCAGTTTCAGCATCGAGATGGCCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCGTCCCGGGGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGCTCATGCAGGAGCACATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGGACAAATGCATCAACCATCAGCAGCTCAACAGGCACCACAAGAAGGCCTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGCACGCACGCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCGCATATATATATATATATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCATTATTAAGCTCGCATCGCATGTAATACTATTACTTATATATGTAATATATAATTAATCATATATATACATGT ] [+] EMBL AK068911 [ GGAGGATGGAGTAGTAGAATGGATGGATGGATGGATGGATGAGGGTAGCTAGCTAATTGGCAAATTAAACAAAGAAGAAGAGGAAAGGAAGGAAGGAAGCGAAGGATCGATGATGCCGGCCGGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAGCGCGC TCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTACAGCCTCGCCCT GGAGACGGCCAACGAAGTC ACCT GGATC AACTGCCGCCTGCGCCGGCGC AAGGGCAAGCACCCTGGGC GGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGCACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTCGCCACCACCAGCGGCCGCAACGCCTCCAGCTACCTCACCTTCGGCGCCAACCCGGCCGTCCAGGCTCCCGGCACCATGGAGACGCCGCTCCTGTACAGGGACGTCGCGTACGGCGCCCATGTCACCGGCATCCTCGTCGGCGGTCAACCACTGGACATCCCGCCCGAGGTGTGGGACGAGGGCCCCCTGGGGAACGACAACCCAGAAGCCGGCATCATCCTCGACACCGGCACCTCCATAACCTACCTCGTGTCGGCGGTGTACGACCCGGTGACGGCGGCGCTGGACAGCCACCTGGCGCACCTGCCTAAGGCCGAAATCAAGGGCTTCGAGTACTGCTACAACTGGACCTTCGCCGGTGACGGGGTGGACCCGGCTCACAACGTGACGATACCCAGTTTCAGCATCGAGATGGCCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCGTCCCGGGGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGCTCATGCAGGAGCACATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGGACAAATGCATCAACCATCAGCAGCTCAACAGGCACCACAAGAAGGCCTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGCACGCACGCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCGCATATATATATATATATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCATTATTAAGCTCGCATCGCATGTAATACTATTACTTATATATGTAATATATAATTAATCATATATATACATGTACTCTGCTCTACTACTACTACTACAGAAGTCTATATATACATTTGCTTGTCCTTCTATATAATATAGGGA] [+] EMBL AU183117 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGGCCGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAGCGCGC TCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTACAGCCTCGCCCT GGAGACGGCCAACGAAGTC ACCT GGATC AACTGCCGCCTGCGCCGGCGC AAGGGCAAGC ] [+] EMBL C98992 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAGGCCGCTTCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGGTTCCCTACAGCCTTGGCCTGGGAGACGGCCAACG ANTC AACTNGGATC AACTGCCG CTTCGCC GCGC AAGGG AAG A CCTTGGC GGn ] [+] EMBL AU070092 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCNAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAG GCGC TCAACATCGCGCAGGTGGGC ATGTACGTGGTGGTTGTCCGAATC GNAACCCGGCG TTCCCTACAGCCTTG CCT TGAGACGGCCAACGAAGTCAACCT NGATCAAATTTCCGACTTCGCCGGCGA AAGGtaaa ] [+] EMBL AU070077 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCNAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGC TGCCGATGCGAAG GNGC TCAACATCGCGCANGTGGGC ATGTACGTGGTGGTTGTCCGNATCGGCAACCCGGCG TTCCCTACAGCCTTGNCCT TGAGACGGCCAACG AGTC Aacc ] [+] EMBL AU070066 [ GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGGGATCCATGGG CGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGAGGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGAGGAGCGGCGCNAGCACTTCCGGGCGTTGATGGCCAAGGACATNAGGCGGATGATGCGGCAGGTGCCGGAGCTCATGTNCAAGACGGACATGTTCGAGCTTTCCGATNCGAAG GCGCTTCAACATCGCGCAGGTGGGC ATTTA ] [+] EMBL AU163668 [ CGCAGGTGGGCAATGTACGTGGTGGTTGTCGGCATCGGCACCCCGGCGCTCCCNTACAGCNTGGCCTT GAAGACGGCCAACGAAGTC ACTT GGATC AACTGCCGCTTGCGCCGGCGCAAAGGGCAAGCACCTTGGGCGGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGAC GAAGCGGAGNAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGCACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTC ] consensusID : consensus_14770#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 531 fasta sequence [GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC-TGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGC-ACCTACTACCAGGTGATGAAGGACTCGACCATCAACAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTC] [+] EMBL AU094290 [GGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTCCTGC ACCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGGCCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCTCCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACAGCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCCTCCTC] [+] EMBL AU064778 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGTTTCCGCTTGCTCCCAGCGCGCCTGCATGGACCTCC ] [+] EMBL AU064744 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATGGACCTCCCCTANAACAACTGCGAGAG CCCGACCAGAACAACTNCTGC AACTACTACCAGGTGATGAAGG CTCGACCATCAACAGCGGCATCTACGGNCAGGAGAAGGCCA ] [+] EMBL AU064655 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAANGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATNGACCTCCCCTACAACACCTGCGAGAGCCCCGANCAGAACACCTCCTGC ACCTACTACCAGGTGATGAANGACTCGACCATCACCAGCGGCAT ] [+] EMBL AU064657 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCNCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGGCCTGCCAAGTCCTCCTCGTGGCGCCGCTTNCGC TGCTACCAGNGCGTCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGANCAACTTCTGC ACCTACTACCAGGTGATGAAGGACTNGACCATTAA ] [+] EMBL AU064788 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACAACTGCGAGAGCCCCGACCAGAACANCTNCTGC ACCTACTACCAGGTGATGAAGGACTNGACCATta ] [+] EMBL AU064779 [ TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGNCTGCATGGACCTCCCCTACAACAACTGCGAGAGCCCCGACCAGAACAACTTCTGCAACTTATTACCAGGTG ] [+] EMBL C73372 [ CCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTNGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATNAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGC TGCTCCCAGCGCGCCTGCATGGACCTCCCCTACAACACCTGCNAGAGCCCCGACCAGAACACCTCCTGC ACCTACTACCAGGTGATGAAGGACTCGACCATCAACAGCGGCATCTACGGCCAGGAGAAGGCCA ] consensusID : consensus_14770#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTNGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGNTTNCGCTGCTNCCAGCGCGCCTGCATGGACCTTCCCTACAACAACTGCGAGAGCCCGACCAGAACAACTTTCTGCAACTACTACCAGGTGATGAAGGACTTGACCATTAACAGCGGCATTTACGGCCAAGAGAAGGCAACGTTGCCGTTTTCGAGGAAACCATNAAGAAGTTACCTNGCTTGTAATTGGTTNTTT] [+] EMBL AU064560 [TCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCGCCGGCGCAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTNGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGNTTNCGCTGCTNCCAGCGCGCCTGCATGGACCTTCCCTACAACAACTGCGAGAGCCCGACCAGAACAACTTTCTGCAACTACTACCAGGTGATGAAGGACTTGACCATTAACAGCGGCATTTACGGCCAAGAGAAGGCAACGTTGCCGTTTTCGAGGAAACCATNAAGAAGTTACCTNGCTTGTAATTGGTTNTTT] consensusID : consensus_14770#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [NTCCCGGTCCCTTGGTGGTGGTCCTCCTNCTAAGCCTGCGCCGGCGCAAGGNCAAGCACCCTGGGCGGCCCCACGTGNCCCCCGCCGCCACCANCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTGCCCTACANCAACTGCGAGAGCCCCGACCAGAACAGCTTCTGCAACTACTACCAGGTGATGAAGGCTTGACCATAACAGCGGAATTTACGGCAGGNGAAGGCCACCGTTGGCGTTTTCGANGAACCATGAAGAAGTNACTTGGCTTGTAATNGGTT] [+] EMBL C74613 [NTCCCGGTCCCTTGGTGGTGGTCCTCCTNCTAAGCCTGCGCCGGCGCAAGGNCAAGCACCCTGGGCGGCCCCACGTGNCCCCCGCCGCCACCANCATGTCCATCCAAGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGATCATGAACTGGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCGCGCCTGCATGGACCTGCCCTACANCAACTGCGAGAGCCCCGACCAGAACAGCTTCTGCAACTACTACCAGGTGATGAAGGCTTGACCATAACAGCGGAATTTACGGCAGGNGAAGGCCACCGTTGGCGTTTTCGANGAACCATGAAGAAGTNACTTGGCTTGTAATNGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 GCAGGAGGATGGAGTAGTAGAATGGATGGATGGATGGATGGATGAGGGTAGCTAGCTAAT 60 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 TGGCAAATTAAACAAAGAAGAAGAGGAAAGGAAGGAAGGAAGCGAAGGATCGATGATGCC 120 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 GGCCGGTCCCGGTCCCTTGGTGGTGGTCCTCCTCCTAAGCCTGCTGCTGTTGGTGGCAGG 180 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 GATCCATGGGCGCCTCCAGCACGAGGAGGAGGAGGAAGAGGAGGAGGTCCAGGACCAGGA 240 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 GGGAGGCAGCAGCAGCTTCACCCTTCCGGTGTGGGCGCCCCACGTTCCGGAGTCGGGGGA 300 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 GGAGCGGCGCGAGCACTTCCGGGCGTTGATGGCCAAGGACATGAGGCGGATGATGCGGCA 360 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 GGTGCCGGAGCTCATGTCCAAGACGGACATGTTCGAGCTGCCGATGCGAAGCGCGCTCAA 420 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 CATCGCGCAGGTGGGCATGTACGTGGTGGTTGTCCGCATCGGCACCCCGGCGCTCCCCTA 480 consensus_14770#2 --------TCCCGGTCCC--TTGGTGGTGGTCCTCCTCCTAA-----GCCTGCGCCGGCG 45 consensus_14770#3 -------NTCCCGGTCCC--TTGGTGGTGGTCCTCCTNCTAA-----GCCTGCGCCGGCG 46 consensus_14770#1 ------GGTCCCGGTCCC--TTGGTGGTGGTCCTCCTCCTAA-----GCCTGCGCCGGCG 47 consensus_14770#0 CAGCCTCGCCCTGGAGACGGCCAACGAAGTCACCTGGATCAACTGCCGCCTGCGCCGGCG 540 ** ** * * * * ** ************* consensus_14770#2 CAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCA 105 consensus_14770#3 CAAGGNCAAGCACCCTGGGCGGCCCCACGTGNCCCCCGCCGCCACCANCATGTCCATCCA 106 consensus_14770#1 CAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCA 107 consensus_14770#0 CAAGGGCAAGCACCCTGGGCGGCCCCACGTGCCCCCCGCCGCCACCACCATGTCCATCCA 600 ***** ************************* *************** ************ consensus_14770#2 AGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGAT 165 consensus_14770#3 AGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGAT 166 consensus_14770#1 AGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGAT 167 consensus_14770#0 AGTCGACGACGACGGAGGCGGAGGAGGGTCCGGCGGCAAGTCCAAGGTGACCAAGGTGAT 660 ************************************************************ consensus_14770#2 CATGAACTNGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGNTTNCGCTGCTNCCAGCG 225 consensus_14770#3 CATGAACTGGTACCGNCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCG 226 consensus_14770#1 CATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCG 227 consensus_14770#0 CATGAACTGGTACCGCCCTGCCAAGTCCTCCTCGTGGCGCCGCTTCCGCTGCTCCCAGCG 720 ******** ****** ************************** ** ******* ****** consensus_14770#2 CGCCTGCATGGACCTTCCCTACAACAACTGCGAGAGCCC-GACCAGAACAACTTTCTGCA 284 consensus_14770#3 CGCCTGCATGGACCTGCCCTACANCAACTGCGAGAGCCCCGACCAGAACAGCTT-CTGCA 285 consensus_14770#1 CGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTC-CTGCA 286 consensus_14770#0 CGCCTGCATGGACCTCCCCTACAACACCTGCGAGAGCCCCGACCAGAACACCTC-CTGCA 779 *************** ******* ** ************ ********** ** ***** consensus_14770#2 ACTACTACCAGGTGATGAAGGACTTGACCATTAACAGCGGCATTTACGGCCAAGAGAAGG 344 consensus_14770#3 ACTACTACCAGGTGATGAAGG-CTTGACCAT-AACAGCGGAATTTACGGCAGGNGAAGGC 343 consensus_14770#1 CCTACTACCAGGTGATGAAGGACTCGACCATCAACAGCGGCATCTACGGCCAGGAGAAGG 346 consensus_14770#0 CCTACTACCAGGTGATGAAGGACTCGACCATCACCAGCGGCATCTACGGCCAGGAGAAGG 839 ******************** ** ****** * ****** ** ****** * * consensus_14770#2 C-AACGTTGCCGTTTTCGAGGAAACCATNAAGAAGTTACCTNGCTT-GTAATTGGTTNTT 402 consensus_14770#3 C-ACCGTTGGCGTTTTCGANGAA-CCATGAAGAAGTNACTTGGCTT-GTAATNGGTT--- 397 consensus_14770#1 CCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCT 406 consensus_14770#0 CCACCGTCGCCGTCTCCGACGGCACCATGAAGAAGCTACCTGGCCTCGTCATCGGCTGCT 899 * * *** * *** * *** * **** ****** ** * ** * ** ** ** * consensus_14770#2 T----------------------------------------------------------- 403 consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 CCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACA 466 consensus_14770#0 CCACCTTCGAGCACGGCGGAGCCGTCAACAGCCACGACGGCATCCTCTCCCTCGGCAACA 959 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 GCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCC 526 consensus_14770#0 GCCCGTCGTCCTTCGGCATCGCTGCCGCCAGGCGCTTCGGTGGCCGCCTCTCCTTCTGCC 1019 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 TCCTC------------------------------------------------------- 531 consensus_14770#0 TCCTCGCCACCACCAGCGGCCGCAACGCCTCCAGCTACCTCACCTTCGGCGCCAACCCGG 1079 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 CCGTCCAGGCTCCCGGCACCATGGAGACGCCGCTCCTGTACAGGGACGTCGCGTACGGCG 1139 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 CCCATGTCACCGGCATCCTCGTCGGCGGTCAACCACTGGACATCCCGCCCGAGGTGTGGG 1199 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 ACGAGGGCCCCCTGGGGAACGACAACCCAGAAGCCGGCATCATCCTCGACACCGGCACCT 1259 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 CCATAACCTACCTCGTGTCGGCGGTGTACGACCCGGTGACGGCGGCGCTGGACAGCCACC 1319 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 TGGCGCACCTGCCTAAGGCCGAAATCAAGGGCTTCGAGTACTGCTACAACTGGACCTTCG 1379 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 CCGGTGACGGGGTGGACCCGGCTCACAACGTGACGATACCCAGTTTCAGCATCGAGATGG 1439 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 CCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCGTCCCGG 1499 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 GGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGC 1559 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 TCATGCAGGAGCACATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGG 1619 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 ACAAATGCATCAACCATCAGCAGCTCAACAGGCACCACAAGAAGGCCTCTTCTTCCTCCT 1679 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 CCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGCACGCAC 1739 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 GCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCG 1799 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 CATATATATATATATATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCAT 1859 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 TATTAAGCTCGCATCGCATGTAATACTATTACTTATATATGTAATATATAATTAATCATA 1919 consensus_14770#2 ------------------------------------------------------------ consensus_14770#3 ------------------------------------------------------------ consensus_14770#1 ------------------------------------------------------------ consensus_14770#0 TATATACATGTACTCTGCTCTACTACTACTACTACAGAAGTCTATATATACATTTGCTTG 1979 consensus_14770#2 --------------------- consensus_14770#3 --------------------- consensus_14770#1 --------------------- consensus_14770#0 TCCTTCTATATAATATAGGGA 2000 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||