These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 690 fasta sequence [TTTTTTTTTTTTTTGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTC---TTTTTTTGTTTG-TTTGTGATAATCACAACAGTA-CAATACAATACCCTTACAAAGATG-ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGT-ATGC-TT-TTTTTTTTCTCTAAAACTATACT-ATTACTCTATTAGTATACTA-GCCAGTCTCTCCATATT-CTTCCAT-T-T-ATT-TCTTCAGAAATATTCAACTT-GAGGATTTTT-CT-TCTCTTATTCT-TCATTCATATTTT-TCGACA-TAATATGA-ACGTTTTCCCA-A-GGGCATCAACATCTAGGTTGAACAA-A-CAC-TGCAGTTGT-TCTT-CTT-GG-CAC-GG-TGAATC-GACCTT-TGGACGCCTCG-TATGCTGAC-TGCCTGACTAGAG-CATCCGATGAATTCACCTGAATAGGATGTAATT-CAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCATGTGGACAGACATTGAAGATCGTCACGACATACGAGAAGTTTTTATCTAACTGGGCCATTTCACATTTTTCATTTTGAGCATCTTTAATGCTCATGACAATAACTCCTGGTACCATCGAGGGACCTGTGTTGGGAAAGCGAACCCTTTTGCTCAGGGGCACTTGCTGTACTCAAACGA] [-] EMBL BI795881 [TTTTTTTTTTATATGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTC TTTTTTTGTTTGTTTTGTGATAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGT ATGC TTAATTTTGTTCTCTAAAACTATACT ATTACTCTATTAGTATACTAGGCCAGTCTCTCCATATT CTTCCATGT TCATT TCTTCAGAAATATTCAACTT GAGGATTTTTGCT TCTCTTATTCTatc ] [+] EMBL CA763241 [ TTTTTTTTTTTTGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTCTTTTTTTTTTGTTTG TTTGTGATAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATACTACAAGT ATGT TT TTTTTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGCCTCTCCATATT CTTCCAT T T ATT TCTTCAAAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCAAATTTT TCGACA TAATATGA ACGTTTCCCCA A GGGCATCAACATCTAGGTTGAACAA A CAC TGCAGTTGT TCTT CTT GG CAC GG TGAATC GACCTT TGGACGCCTCG TATGCTGAC TGCCTGACTAGAG CATCCAATGAATTCACCTGAATAGGATGTAATT CAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCAGGGGGACAGACATTGAGGATCGTCACGACATACGAGAAGTTTTTATCTAACTGGGCCATTTCACATTTTTCATTTTGAGCATCTTTAATGCTCATGACAATAACTCCTGGTACCATCGAGGGACCTGTGTTGGGAAAGCGAACCCTTTTGCTCAGGGGCACTTGCTGTACTCAAACGA] [-] EMBL BI795816 [ TTTTTTTTTTGGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTC TTTTTGGTTG GTGGTGATAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGT ATG ] [-] EMBL BI795287 [ TTTTTTTTTTGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTCTTTTTTTTTTGTTTG TTTGTGATAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGT ATGC TT TTTTTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGGTTGAACAA A CAC TGCAGTTGT TCTT CTTGGG CAC GG TGAATC GACCTTGTGGACGCCTCG TATGCTGAC TGGCTGACTAGAG CATCCGATGAATTC CCTGA ] [-] EMBL BI796656 [ TTTTTATATGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTC TTTTTTTTGTTG TTGTGATAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGT ATGC TT TTTTTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGGTTGAACAA A CAC TGCAGTTGT TCTT CTT GG CAC GG TGAATC GACCTT TGGACGCCTCG TATGCTGAC TG CTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGTACTT CAAGCCCCAACGAAGCGAGATCATGG CTTCTATAGAC CTTCATGTG ] [-] EMBL BI796840 [ TTTTTTGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTC TTTTTTTTGTTG TTGTGATAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGT ATGC TT TTTTTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGGTTGAACAA ACCAC TGCAGTTGT TCTT CTT GGCCAC GG TGAATC GACCTT GGGACGCCTCG TATGCTGAC TG CTGACTAGAG CATCCGATGAATT ] [-] EMBL BI796180 [ TTTTTGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTC TTTTTTTGTTTG TTTGTGATAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGT ATGC TT TTTTTTCTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT TAT ATT TCTTCAGAAATATTCAACTT GAGGA TTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACG TTCCCA A GGGCATCAACATCTAGGTTGAACAA A CACTTGCAGTCGT ACTT CTT GG CAC GGATGAATCAGACCTTATGGACGCCTCGATATGCTGAC TGCCTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGTAATT CA ] [-] EMBL BI797787 [ TACTTAGCATGCCATATTTCCATGTAAACATAAGTATGTC TTG TTG TTGTGATAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAA CTGGGCACTTTATGCGATGCTACAAGT ATGC TT TTTTTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGGTTGAACAA A CAC TGCAGTTGT TCTT CTT GG CAC GG TGAATC GACCTT TGGACGCCTCG TATGCTGACTTGCCTGACTAGAGCCATCCGATGAATTCACCTGAATAGGATGTAATT CAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCATGTGGAC ] [-] EMBL BI797104 [ tcTTTG TGGTGATAATCACAACAGTACCCATACAATA CCTTACAAAGATGCACAAAGCATG CGAAACCTGGGCACTTTATGCGATGCTACAAGTCATGCTTT TTTTTTTTCTCTAAAACTATACTCATTACTCTATTAGTATcac ] [-] EMBL BI795713 [ TAATCACAACAGTA CAATACAATACCCTTACAAAGATG ACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGT ATGC TTTTTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T A ATTCTCTTCAGAAATATTCAACTT GAGGATTATA CTATCTCTTATTCTCTCATTCATATTTTCTCGACACTAATATGACACGTTTTCCCACA GGGCATCAACATCTAGGTTGAACAA A CAC TGGAGTTGTATCTTACTT GG CAC GG TGAATC GACCTT ] [-] EMBL BI798631 [ TTTTTTTTTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGGTTGAACAA A CAC TGCAG TGT TCTT C T GG CAC GG TGAATC GACC T TGGACGCCTCG TATGCTGAC TGCCTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGTAATT CAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCATGTGGACAGACATTGAA ] [-] EMBL BI795628 [ TTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGGTTGAACAA A CAC TGCAGTTGT TCTT CTT GG CAC GG TGAATC GACCTT TGGACGCCTCG TATGCTGAC TGCCTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGTAATT CAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCATGTGGACAGACATTGAAGATCGTCACGACATAAGAGAAGTTTTTATCTAACTGGGCCATTTCACATTTTTCA TTTGAGCATCTTTAATG TCATGACAATAACTCCT GTACCATCGAGGGACCTGTGTTGTGAAA ] [-] EMBL BI799485 [ TTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATTGCTTCCAT T T ATT TCTTCAGAAATATTCAAC T GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA AGGGGCATCAACATCTAGG TGAACAAGA CAC TGCAGTTGT TCTT CTT GG CAC GG GGAATC GACCTT GGGACGCCTCG TATGCTGAC TGCCTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGTAATT CAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCATGTGGACAGACATTGAA ] [-] EMBL BI799346 [ TTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGGTTGAACAA A CAC TGCAGTGGT TCTT CTG GG CACGGG TGAATC GACCTT GGGACGCCTCG TATGCTGAC TGCCTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGTAATT CAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCATGTGGACAGACATTGAA ] [-] EMBL BI798323 [ TTTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGGTTGAACAA A CAC TGCAG TGT TCTT CTT GG CAC GG TGAATC GACC T TGGACGCCTCG TATGCTGAC TGCCTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGTAATT CAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCATGTGGACAGACATTGAA ] [-] EMBL BI798593 [ TTTTCTCTAAAACTATACT ATTACTCTATTAGTATACTA GCCAGTCTCTCCATATT CTTCCAT T T ATT TCTTCAGAAATATTCAACTT GAGGATTTTT CT TCTCTTATTCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A GGGCATCAACATCTAGG TGAACAA A CAC TGCAG TGT TCTT CTT GG CAC GG TGAATC GACCTT TGGACGCCTCG TATGCTGAC TG CTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGTAATTGCAAGCCCCAACGAAGCGAGATCATGGATTTCTATAGACACTTCATGTGGACAGACATTGAA ] [-] EMBL AA749542 [ TTCAACTTGGAGGACTTTT AT TCTCTTA TCT TCATTCATATTTT TCGACA TAATATGA ACGTTTTCCCA A AGGCATCAACATCTAGGTTGAACGA A CAC TGCAGTTGT TCTT CTT GG CAC GG TGAATC GA CTT TGGACGCCTCG TATGCTGAC TGCCTGACTAGAG CATCCGATGAATTCACCTGAATAGGATGCAATT CAAGCCCCAACG ] consensusID : consensus_14771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [TTTTTTTTTTCCCGGATCAGGTCTCTTTATTTCTTTTTCCATTTATTTCTTCCAGAAATATTCCAACTGGAGGATTTCTTCTCTTATTCTTCATTCATATTTTTCGACATAATTATGAACGTTTTCCCCAAGGGCATCCAACCATCTCAGGTTGTGCAACAAACCACTGGCAGTGGTATCTTCTGTGGCCCGGGGCAATCCGCACCTTGGGCACGCCTCGTATGCTAGCACTGCCTGCACTAGCAGCCATCCGATGCAATTCCACCTGCAATAGGCATGTAATTCCAAGCCCCAACGAAGCCGAGCATCATGGGCATTCTCTCATAAGCACCACTTCCAGGTGGCACCAGCACCATTGGCACAGATCTGTCCACGCACATAAGAGCAAGTTTTATCATCTCAACTGGGGCCCATTTCACCATTTTCATTTGTGAGCATCTTTAAGGCTCATGACAATAACTCCGGGTCACCCATCGAGGGACC] [-] EMBL BI797417 [TTTTTTTTTTCCCGGATCAGGTCTCTTTATTTCTTTTTCCATTTATTTCTTCCAGAAATATTCCAACTGGAGGATTTCTTCTCTTATTCTTCATTCATATTTTTCGACATAATTATGAACGTTTTCCCCAAGGGCATCCAACCATCTCAGGTTGTGCAACAAACCACTGGCAGTGGTATCTTCTGTGGCCCGGGGCAATCCGCACCTTGGGCACGCCTCGTATGCTAGCACTGCCTGCACTAGCAGCCATCCGATGCAATTCCACCTGCAATAGGCATGTAATTCCAAGCCCCAACGAAGCCGAGCATCATGGGCATTCTCTCATAAGCACCACTTCCAGGTGGCACCAGCACCATTGGCACAGATCTGTCCACGCACATAAGAGCAAGTTTTATCATCTCAACTGGGGCCCATTTCACCATTTTCATTTGTGAGCATCTTTAAGGCTCATGACAATAACTCCGGGTCACCCATCGAGGGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14771#0 TTTTTTTTTTTTTTGAAACAAAGGGAGCATTTTTATTTACTTAGCATGCCATATTTCCAT 60 consensus_14771#1 ------------------------------------------------------------ consensus_14771#0 GTAAACATAAGTATGTCTTTTTTTGTTTGTTTGTGATAATCACAACAGTACAATACAATA 120 consensus_14771#1 ------------------------------------------------------------ consensus_14771#0 CCCTTACAAAGATGACAAAGCATGCCGAAACCTGGGCACTTTATGCGATGCTACAAGTAT 180 consensus_14771#1 ------------------------------------------------------------ consensus_14771#0 GCTTTTTTTTTTCTCTAAAACTATACTATTACTCTATTAGTATACTAGCCAGTCTCTCCA 240 consensus_14771#1 ----------------------------TTTTTTTTTTCCCGGATCAGGTC-TCTTTATT 31 ** * * ** * ** *** * consensus_14771#0 TATTCTTCCATTTATTTCTTC-AGAAATATTC-AACTTGAGGATTTTTCTTCTCTTATTC 298 consensus_14771#1 TCTTTTTCCATTTATTTCTTCCAGAAATATTCCAACTGGAGGATTT--CTTCTCTTATTC 89 * ** **************** ********** **** ******** ************ consensus_14771#0 TTCATTCATATTTTTCGACATAAT-ATGAACGTTTTCCC-AAGGGCATCAA--CATCT-A 353 consensus_14771#1 TTCATTCATATTTTTCGACATAATTATGAACGTTTTCCCCAAGGGCATCCAACCATCTCA 149 ************************ ************** ********* * ***** * consensus_14771#0 GGTTG---AACAAAC-ACTG-CAGTTGT-TCTTCT-TGGCACGGTG-AATCGAC-CTTTG 404 consensus_14771#1 GGTTGTGCAACAAACCACTGGCAGTGGTATCTTCTGTGGCCCGGGGCAATCCGCACCTTG 209 ***** ******* **** **** ** ****** **** *** * **** * * *** consensus_14771#0 G--ACGCCTCGTATGCTG--ACTGCCTG-ACTAGAG--CATCCGATGAA--TTCACCTG- 454 consensus_14771#1 GGCACGCCTCGTATGCTAGCACTGCCTGCACTAGCAGCCATCCGATGCAATTCCACCTGC 269 * ************** ******** ***** ********* * * ****** consensus_14771#0 AATAGG-ATGTAATTC-AAGCCCCAACGAAGC-GAG-ATCATGGAT----TTCTATAGAC 506 consensus_14771#1 AATAGGCATGTAATTCCAAGCCCCAACGAAGCCGAGCATCATGGGCATTCTCTCATAAGC 329 ****** ********* *************** *** ******* * *** * consensus_14771#0 AC----TTCATGTGG----ACAGACATTGA---AGATCG--TCACG-ACATACGAGAAGT 552 consensus_14771#1 ACCACTTCCAGGTGGCACCAGCACCATTGGCACAGATCTGTCCACGCACATAAGAGCAAG 389 ** * ** **** * ***** ***** **** ***** *** * consensus_14771#0 TTTTATC----TAACTGGG--CCATTTCACATTTTTCATTT-TGAGCATCTTTAATGCTC 605 consensus_14771#1 TTTTATCATCTCAACTGGGGCCCATTTCACCATTTTCATTTGTGAGCATCTTTAAGGCTC 449 ******* ******* ********* ********* ************* **** consensus_14771#0 ATGACAATAACTCCTGGTA--CCATCGAGGGACCTGTGTTGGGAAAGCGAACCCTTTTGC 663 consensus_14771#1 ATGACAATAACTCCGGGTCACCCATCGAGGGACC-------------------------- 483 ************** *** ************* consensus_14771#0 TCAGGGGCACTTGCTGTACTCAAACGA 690 consensus_14771#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||