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Oryza sativa
cluster # 14786 cluster # 14786       Sequences # 18       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14786#0 length = 978 sequences # 16  
consensus_14786#1 length = 515 sequences # 1  
consensus_14786#2 length = 211 sequences # 1  

consensusID : consensus_14786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 978
fasta sequence
                              [TCTCCTTTCTCTGCTCCCCCCTTCCTCCTCTGCACCTCACCTCTCCTCTCATGGAGTTCGCCTAGTTGTGTGCTCTGCTCCTCCTTGAAGAAGCCTTCAGATCTGTGGTTCCTAGCCTTTCTCAGCTTCCTCAACACAGCCGTCCAGATGGCGTCCCTGACACCCGAAGCTGAAGCTCCCGGAGGAGGAGCCCTGCTCGCCGCCGGCGACGACGTCACCGCCGCGAATCTGCTCGCCGCCGCCGTAGCCACCGAGGGTCCTGTATTTGATATGCCTGACTTCAAGATGGGTGGGAAGAAGAGTGATGATGCTGCTCCCACTGATG-CCGGGGA-TG-AAGATGGTGGTGATGATGACGGGGACGAGGATGGTGACTTTGGGGAAGGCG-AAGAGGACGTTTCAGAAGGTGAGGGATATGATAATCCAAAA-GGCATCGAT-AACAACAAGAAAAGAGGTGAGCCTGAGGAAAATGGTGAGGAGGATG-AGGAAGAGCCTGAAGG-CCAG---GAGGGTGGTGGAGGTGATGACGACGATGACGATGATGATGACAATGAGGATGACGACGACGATGATGATGGTGGTGAAGAT-GA-TGA-TGGAGTAGA-TG-A-GG-AAGA-GGAA-GATCAGGACAA-TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC-CCAA-AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA-GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA-TTAGGGAG-TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTGAAGATTGAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK104813             [TCTCCTTTCTCTGCTCCCCCCTTCCTCCTCTGCACCTCACCTCTCCTCTCATGGAGTTCGCCTAGTTGTGTGCTCTGCTCCTCCTTGAAGAAGCCTTCAGATCTGTGGTTCCTAGCCTTTCTCAGCTTCCTCAACACAGCCGTCCAGATGGCGTCCCTGACACCCGAAGCTGAAGCTCCCGGAGGAGGAGCCCTGCTCGCCGCCGGCGACGACGTCACCGCCGCGAATCTGCTCGCCGCCGCCGTAGCCACCGAGGGTCCTGTATTTGATATGCCTGACTTCAAGATGGGTGGGAAGAAGAGTGATGATGCTGCTCCCACTGATG CCGGGGA TG AAGATGGTGGTGATGATGACGGGGACGAGGATGGTGACTTTGGGGAAGGCG AAGAGGACGTTTCAGAAGGTGAGGGATATGATAATCCAAAA GGCATCGAT AACAACAAGAAAAGAGGTGAGCCTGAGGAAAATGGTGAGGAGGATG AGGAAGAGCCTGAAGG CCAG   GAGGGTGGTGGAGGTGATGACGACGATGACGATGATGATGACAATGAGGATGACGACGACGATGATGATGGTGGTGAAGAT GA TGA TGGAGTAGA TG A GG AAGA GGAA GATCAGGACAA TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATG                                                                                   ]
[+] EMBL AK064789             [                    CTTCCTCCTCTGCACCTCACCTCTCCTCTCATGGAGTTCGCCTAGTTGTGTGCTCTGCTCCTCCTTGAAGAAGCCTTCAGATCTGTGGTTCCTAGCCTTTCTCAGCTTCCTCAACACAGCCGTCCAGATGGCGTCCCTGACACCCGAAGCTGAAGCTCCCGGAGGAGGAGCCCTGCTCGCCGCCGGCGACGACGTCACCGCCGCGAATCTGCTCGCCGCCGCCGTAGCCACCGAGGGTCCTGTATTTGATATGCCTGACTTCAAGATGGGTGGGAAGAAGAGTGATGATGCTGCTCCCACTGATG CCGGGGA TG AAGATGGTGGTGATGATGACGGGGACGAGGATGGTGACTTTGGGGAAGGCG AAGAGGACGTTTCAGAAGGTGAGGGATATGATAATCCAAAA GGCATCGAT AACAACAAGAAAAGAGGTGAGCCTGAGGAAAATGGTGAGGAGGATG AGGAAGAGCCTGAAGG CCAG   GAGGGTGGTGGAGGTGATGACGACGATGACGATGATGATGACAATGAGGATGACGACGACGATGATGATGGTGGTGAAGAT GA TGA TGGAGTAGA TG A GG AAGA GGAA GATCAGGACAA TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAGCATAATTCGACCTGAATGGTGAAAGC                                                ]
[+] EMBL AU077724             [                                  cnTCANNTCTNNTNTCATGGAGTTCGCCTAGTTGTGTGCTCTGCTCCTCCTTGAAGAAGCCTTCAGATCTGTGGTTCCTAGCCTTTCTCAGCTTCCTCAACACAGCCGTCCAGATGGCGTCCCTGACACCCGAAGCTGAAGCTCCCGGAGGAGGAGCCCTGCTCGCCGCCGG GACGACGTCACCGCCGCGAATCTGCTCGCCGCCGCCGTAGCCACCGAGGGTCCTGTATTTGATATGCCTGACTTCAAGATGGGTGGGAAGAAGAGTGATGATGCTGCTCCCACTGATG CCGGGGA TG AAGATGGTGGTGATGATGACGGGGACGAGGATGGTGACTTTGGGGAAGGCG AAGAGGACGTTTCAGAAGGTGAGGGATATGATAATCCAAAAGGGCATCGATAAACAACAAGAAAAGAGGTGAGCCTGAGGAAAATGGTGAGGA GATGAAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU225351             [                                       CCTCTCCTCTCATGGAGTTCGCCTAGTTGTGTGCTCTGCTCCTCCTTGAAGAAGCCTTCAGATCTGTGGTTCCTAGCCTTTCTCAGCTTCCTCAACACAGCCGTCCAGATGGCGTCCCTGACACCCGAAGCTGAAGCTCCCGGAGGAGGAGCCCTGCTCGCCGCCGGCGACGACGTCACCGCCGCGAATCTGCTCGCCGCCGCCGTAGCCACCGAGGGTCCTGTATTTGATATGCCTGACTTCAAGATGGGTGGGAAGAAGAGTGATGATGCTGCTCCCACTGATG CCGGGGA TG AAGATGGTGGTGATGATGACGGGGACGAGGATGGTGACTTTGGGGAAGGCG AAGAGGACGTTTCAGAAGGTGAGGGATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSS1414A             [                                                           GCCTAGTTGTGTGCTCTGCTCCTCCTTGAAGAAGCCTTCAGATCTGTGGTTCCTAGCCTTTCTCAGCTTCCTCAACACAGCCGTCCAGATGGCGTCCCTGACANCCGAAGCTGAAGCTCCCGGAGGAGGAGCCCTGCTCGCCGCCGG GACGACGTCACCGCCGCGAATCTGCTCGCCGCCGCCGTAGCCACCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BI806676             [                                                                                                                                                                                                                                                                    TGTATTGGATATG CTGACTTCAAATTGGTTGGGTAAAAGA TGATGA NCTGCTCGCATTTATGCCCGGGGATTGAAAGAT GT GTGATAAT ACGGGGACGAGGAT GTGACTTTGGGGAA GCGTAAGAGGACGTTTCAGAA GTGAGGGATATGATAATCC AAA GGCATCGAT AACAACAAGAAAAGAGGTGAGCCTGAGGAAAATGGTGAGGAGGATG AGGAAGAGCCTGAAGG CCAG   GAGGGTGGTGGAGGTGATGACGACGATGACGATGATGATGACAATGAGGATGACGACGACGATGATGATGGTGGTGAAGAT GA TGA TGGAGTAGA TG A GG AAGA GGAA GATCAGGACAA TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGC ATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAaaaaaa                                                                                         ]
[+] EMBL CF334358             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gactggaCTGAAGGAGTAGAAAGAGGGTGGTGGAGGTGATGACGACGATGACGATGATGATGACAATGAGGATGACGACGACGATGATGATGGTGGTGAAGAT GA TGA TGGAGTAGA TG A GG AAGA GGAA GATCAGGACAA TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAG                                                 ]
[+] EMBL CA761702             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATGACAATGAGGATGACGACGACGATGATGATGGTGGTGAAGAT GA TGA TGGAGTAGA TG A GG AAGA GGAA GATCAGGACAA TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTCCAGTACGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTGAAGATTGAATATGTCCCAAGTTATTTTTAAAAAAAAAAAA     ]
[-] EMBL CF334357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTGGTGAAGAT GA TGA TGGAGTAGA TG A GG AAGA GGAA GATCAGGCCAA TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTGAAGATTGAATAAAAAAAAAAAAAAAAAAAA               ]
[+] EMBL AU097033             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       gtcgcAAGATCGATTGATTGGAGTAGATTG A GGAAAGATGGAACGATCAGGACAATTGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCCNCGAAGAGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAAa                                                                         ]
[+] EMBL BI807772             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTAGA TGTATGG AAGA GGAA GATCAGGAC A TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCGA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATATGTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCAGTTAGGGAGTTTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGC ATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTGAAGATTGAATAAAAAA                             ]
[+] EMBL AU057909             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGACAA TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTGAAGATTGAATAAAAAAAAAAAAAATAAAAAAAAAA          ]
[+] EMBL AU057859             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGACAA TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTGAAGATTGAATAAAAAAA                            ]
[+] EMBL AU077725             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCACTTCAGCCC CCAA AGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATA GTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGNCCTGAATGGTGAAAGCCTGANGATTGNATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU184239             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTGAAGATTGAATAAAAAAAA                           ]
[+] EMBL AF522021             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCA TTAGGGAG TTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTGAA                                           ]


>consensus_14786#0 TCTCCTTTCTCTGCTCCCCCCTTCCTCCTCTGCACCTCACCTCTCCTCTCATGGAGTTCG CCTAGTTGTGTGCTCTGCTCCTCCTTGAAGAAGCCTTCAGATCTGTGGTTCCTAGCCTTT CTCAGCTTCCTCAACACAGCCGTCCAGATGGCGTCCCTGACACCCGAAGCTGAAGCTCCC GGAGGAGGAGCCCTGCTCGCCGCCGGCGACGACGTCACCGCCGCGAATCTGCTCGCCGCC GCCGTAGCCACCGAGGGTCCTGTATTTGATATGCCTGACTTCAAGATGGGTGGGAAGAAG AGTGATGATGCTGCTCCCACTGATGCCGGGGATGAAGATGGTGGTGATGATGACGGGGAC GAGGATGGTGACTTTGGGGAAGGCGAAGAGGACGTTTCAGAAGGTGAGGGATATGATAAT CCAAAAGGCATCGATAACAACAAGAAAAGAGGTGAGCCTGAGGAAAATGGTGAGGAGGAT GAGGAAGAGCCTGAAGGCCAGGAGGGTGGTGGAGGTGATGACGACGATGACGATGATGAT GACAATGAGGATGACGACGACGATGATGATGGTGGTGAAGATGATGATGGAGTAGATGAG GAAGAGGAAGATCAGGACAATGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAG CCCCCAAAGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCAACTTACCATG CGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCATTAGGGAGTTAA GAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGC AATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCG CTAACATAATTCGACCTGAATGGTGAAAGCCTGAAGATTGAATAAAAAAAAAAAAAATAA AAAAAAAAAAAAAAAAAA



consensusID : consensus_14786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence
                              [AAAAGAGGTGACCTGAGGAAAATGGTGAGGAGGATGAGGAAGAGCCTGAAGGCCAGGAGGGTGTGGAGGTGATGACGACGATGACGATGATGATGACATGAGGATGACGACGACGATGATGATGGTGGTGAAGATGATGATGGAGTAGATGAGGAAGAGGAAGATCAGGACATGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCCCCAAGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCATTAGGGAGTTAAGAAAAAAGGGCTCCACACGTTCAGTACGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTCGAAGATTGAATATGTCACAGTTATTTTTAAAAA]

[+] EMBL BI798666             [AAAAGAGGTGACCTGAGGAAAATGGTGAGGAGGATGAGGAAGAGCCTGAAGGCCAGGAGGGTGTGGAGGTGATGACGACGATGACGATGATGATGACATGAGGATGACGACGACGATGATGATGGTGGTGAAGATGATGATGGAGTAGATGAGGAAGAGGAAGATCAGGACATGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAGCCCCCAAGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCGAACTTGCATTAGGGAGTTAAGAAAAAAGGGCTCCACACGTTCAGTACGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCCTCGAAGATTGAATATGTCACAGTTATTTTTAAAAA]


>consensus_14786#1 AAAAGAGGTGACCTGAGGAAAATGGTGAGGAGGATGAGGAAGAGCCTGAAGGCCAGGAGG GTGTGGAGGTGATGACGACGATGACGATGATGATGACATGAGGATGACGACGACGATGAT GATGGTGGTGAAGATGATGATGGAGTAGATGAGGAAGAGGAAGATCAGGACATGAGGATG ATGAGGAAGATGATGATGAAGACTCACTTCAGCCCCCAAGAAGAGGAAGAAGTGAATATC TTCATGCGGCTATAGTTACCACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTT CTCGGAATCGAACTTGCATTAGGGAGTTAAGAAAAAAGGGCTCCACACGTTCAGTACGTG TGGATTTGTAGGAGCTTTATGATTTCAAGCATTAGACAGAACTCTGTTGTCATTGTTGCT TGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAATGGTGAAAGCC TCGAAGATTGAATATGTCACAGTTATTTTTAAAAA



consensusID : consensus_14786#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence
                              [GGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCACTTACCATGCGCTGAGCTGTGCTTGGTTTTCAGTCATGTTCTCGGAATCGAACTTGCATTAGGGAGGTTAAGAAAAAAGGGCTCCACACGTTCAGTACGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCCTGTTGTCATTGTTGCTTAAAAAAAAAA]

[+] EMBL BI796645             [GGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCACTTACCATGCGCTGAGCTGTGCTTGGTTTTCAGTCATGTTCTCGGAATCGAACTTGCATTAGGGAGGTTAAGAAAAAAGGGCTCCACACGTTCAGTACGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAACTCCTGTTGTCATTGTTGCTTAAAAAAAAAA]


>consensus_14786#2 GGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCACTTACCATGCGCTGAGCTGTGCT TGGTTTTCAGTCATGTTCTCGGAATCGAACTTGCATTAGGGAGGTTAAGAAAAAAGGGCT CCACACGTTCAGTACGTGTGGATTTGTAGGAGCTTTATGATTTCAAGCAATTAGACAGAA CTCCTGTTGTCATTGTTGCTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14786#0      TCTCCTTTCTCTGCTCCCCCCTTCCTCCTCTGCACCTCACCTCTCCTCTCATGGAGTTCG 60
consensus_14786#1      ------------------------------------------------------------
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      CCTAGTTGTGTGCTCTGCTCCTCCTTGAAGAAGCCTTCAGATCTGTGGTTCCTAGCCTTT 120
consensus_14786#1      ------------------------------------------------------------
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      CTCAGCTTCCTCAACACAGCCGTCCAGATGGCGTCCCTGACACCCGAAGCTGAAGCTCCC 180
consensus_14786#1      ------------------------------------------------------------
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      GGAGGAGGAGCCCTGCTCGCCGCCGGCGACGACGTCACCGCCGCGAATCTGCTCGCCGCC 240
consensus_14786#1      ------------------------------------------------------------
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      GCCGTAGCCACCGAGGGTCCTGTATTTGATATGCCTGACTTCAAGATGGGTGGGAAGAAG 300
consensus_14786#1      ------------------------------------------------------------
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      AGTGATGATGCTGCTCCCACTGATGCCGGGGATGAAGATGGTGGTGATGATGACGGGGAC 360
consensus_14786#1      ------------------------------------------------------------
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      GAGGATGGTGACTTTGGGGAAGGCGAAGAGGACGTTTCAGAAGGTGAGGGATATGATAAT 420
consensus_14786#1      ------------------------------------------------------------
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      CCAAAAGGCATCGATAACAACAAGAAAAGAGGTGAGCCTGAGGAAAATGGTGAGGAGGAT 480
consensus_14786#1      ------------------------AAAAGAGGTGA-CCTGAGGAAAATGGTGAGGAGGAT 35
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      GAGGAAGAGCCTGAAGGCCAGGAGGGTGGTGGAGGTGATGACGACGATGACGATGATGAT 540
consensus_14786#1      GAGGAAGAGCCTGAAGGCCAGGAGGGTG-TGGAGGTGATGACGACGATGACGATGATGAT 94
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      GACAATGAGGATGACGACGACGATGATGATGGTGGTGAAGATGATGATGGAGTAGATGAG 600
consensus_14786#1      GACA-TGAGGATGACGACGACGATGATGATGGTGGTGAAGATGATGATGGAGTAGATGAG 153
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      GAAGAGGAAGATCAGGACAATGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAG 660
consensus_14786#1      GAAGAGGAAGATCAGGACA-TGAGGATGATGAGGAAGATGATGATGAAGACTCACTTCAG 212
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      CCCCCAAAGAAGAGGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCAACTTACCATG 720
consensus_14786#1      CCCCCAA-GAAGAGGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCA-CTTACCATG 270
consensus_14786#2      -------------GGAAGAAGTGAATATCTTCATGCGGCTATAGTTACCA-CTTACCATG 46
                                    ************************************* *********

consensus_14786#0      CGCTGAGCTGTGCTTGGTTTTC-GTCATGTTCTCGGAATCGAACTTGCATTAGGGAG-TT 778
consensus_14786#1      CGCTGAGCTGTGCTTGGTTTTC-GTCATGTTCTCGGAATCGAACTTGCATTAGGGAG-TT 328
consensus_14786#2      CGCTGAGCTGTGCTTGGTTTTCAGTCATGTTCTCGGAATCGAACTTGCATTAGGGAGGTT 106
                       ********************** ********************************** **

consensus_14786#0      AAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAA 838
consensus_14786#1      AAGAAAAAAGGGCTCCACACGTTCAGTACGTGTGGATTTGTAGGAGCTTTATGATTTCAA 388
consensus_14786#2      AAGAAAAAAGGGCTCCACACGTTCAGTACGTGTGGATTTGTAGGAGCTTTATGATTTCAA 166
                       **************************** *******************************

consensus_14786#0      GCAATTAGACAGAACTC-TGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTT 897
consensus_14786#1      GCA-TTAGACAGAACTC-TGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTT 446
consensus_14786#2      GCAATTAGACAGAACTCCTGTTGTCATTGTTGCTTAAAAAAAAAA--------------- 211
                       *** ************* *****************                         

consensus_14786#0      TCGCTAACATAATTCGACCTGAATGGTGAAAGCCT-GAAGATTGAATAAAAAAAAAAAAA 956
consensus_14786#1      TCGCTAACATAATTCGACCTGAATGGTGAAAGCCTCGAAGATTGAATATGTCACAGTTAT 506
consensus_14786#2      ------------------------------------------------------------
                                                                                   

consensus_14786#0      ATAAAAAAAAAAAAAAAAAAAA 978
consensus_14786#1      TTTTAAAAA------------- 515
consensus_14786#2      ----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)